Wall clock time and date at job start Tue Mar 31 2020 10:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99619 * 2 1 4 4 H 1.48501 * 109.46939 * 274.93998 * 3 2 1 5 5 H 1.48494 * 109.47286 * 34.93634 * 3 2 1 6 6 H 1.48501 * 109.47299 * 154.94157 * 3 2 1 7 7 C 1.37880 * 120.00519 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99899 * 5.04486 * 7 2 1 9 9 C 1.50703 * 119.99833 * 184.76715 * 7 2 1 10 10 H 1.08998 * 109.49919 * 325.45228 * 9 7 2 11 11 C 1.53036 * 109.49526 * 205.38906 * 9 7 2 12 12 C 1.53041 * 109.53826 * 178.68717 * 11 9 7 13 13 C 1.53188 * 109.31491 * 61.36408 * 12 11 9 14 14 N 1.46922 * 108.77435 * 305.36542 * 13 12 11 15 15 C 1.34775 * 120.63172 * 233.60737 * 14 13 12 16 16 O 1.21589 * 119.99979 * 185.06048 * 15 14 13 17 17 N 1.34774 * 119.99947 * 5.05911 * 15 14 13 18 18 C 1.39395 * 119.99681 * 174.82184 * 17 15 14 19 19 C 1.39051 * 119.68250 * 185.08452 * 18 17 15 20 20 C 1.38280 * 118.92875 * 179.72553 * 19 18 17 21 21 C 1.38955 * 118.65975 * 0.54783 * 20 19 18 22 22 C 1.38063 * 119.46995 * 359.72775 * 21 20 19 23 23 N 1.32173 * 119.68902 * 5.36356 * 18 17 15 24 24 C 1.51490 * 109.60733 * 179.97438 * 22 21 20 25 25 C 1.54332 * 105.20760 * 17.20372 * 24 22 21 26 26 C 1.51249 * 130.56930 * 179.72332 * 21 20 19 27 27 C 1.46936 * 118.76315 * 53.59068 * 14 13 12 28 28 H 0.96990 * 120.00510 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46197 * 298.70708 * 11 9 7 30 30 H 1.09001 * 109.46370 * 58.68074 * 11 9 7 31 31 H 1.09002 * 109.49719 * 181.31890 * 12 11 9 32 32 H 1.09001 * 109.49611 * 301.41131 * 12 11 9 33 33 H 1.09001 * 109.58895 * 65.15090 * 13 12 11 34 34 H 1.09003 * 109.58604 * 185.58087 * 13 12 11 35 35 H 0.97000 * 120.00291 * 354.82867 * 17 15 14 36 36 H 1.08000 * 120.53247 * 359.97438 * 19 18 17 37 37 H 1.07994 * 120.66990 * 180.24179 * 20 19 18 38 38 H 1.08994 * 110.29796 * 136.13686 * 24 22 21 39 39 H 1.08999 * 110.29145 * 258.27131 * 24 22 21 40 40 H 1.08998 * 110.82413 * 91.88713 * 25 24 22 41 41 H 1.09006 * 110.82515 * 215.43965 * 25 24 22 42 42 H 1.08998 * 110.31468 * 43.94856 * 26 21 20 43 43 H 1.08998 * 110.31707 * 281.76298 * 26 21 20 44 44 H 1.09002 * 109.61282 * 186.63950 * 27 14 13 45 45 H 1.08998 * 109.56514 * 66.21571 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3921 2.1068 -1.3949 5 1 1.5025 2.6203 0.8017 6 1 3.5949 1.4125 0.5930 7 6 2.0046 -1.1940 0.0005 8 1 1.4679 -2.1275 -0.0813 9 6 3.5077 -1.1960 0.1090 10 1 3.9112 -0.3270 -0.4107 11 6 4.0638 -2.4735 -0.5242 12 6 5.5920 -2.4613 -0.4439 13 6 6.0218 -2.4236 1.0260 14 7 5.3741 -1.2778 1.6789 15 6 6.1054 -0.3668 2.3509 16 8 5.5513 0.5252 2.9639 17 7 7.4509 -0.4446 2.3436 18 6 8.2101 0.5567 2.9471 19 6 9.5964 0.5260 2.8444 20 6 10.3340 1.5302 3.4441 21 6 9.6605 2.5280 4.1381 22 6 8.2820 2.4959 4.2066 23 7 7.6057 1.5232 3.6161 24 6 7.7852 3.6795 5.0110 25 6 8.9703 4.6673 5.0518 26 6 10.1868 3.7313 4.8883 27 6 3.9139 -1.1433 1.5851 28 1 -0.4850 0.8399 -0.0004 29 1 3.6789 -3.3415 0.0112 30 1 3.7557 -2.5250 -1.5685 31 1 5.9883 -3.3603 -0.9159 32 1 5.9763 -1.5803 -0.9580 33 1 5.7164 -3.3461 1.5198 34 1 7.1047 -2.3150 1.0874 35 1 7.8909 -1.1972 1.9184 36 1 10.0890 -0.2672 2.3015 37 1 11.4119 1.5361 3.3787 38 1 6.9276 4.1380 4.5187 39 1 7.5196 3.3658 6.0205 40 1 8.9126 5.3760 4.2257 41 1 9.0079 5.1881 6.0087 42 1 10.9689 4.2247 4.3112 43 1 10.5678 3.4317 5.8646 44 1 3.6060 -0.1901 2.0150 45 1 3.4366 -1.9611 2.1250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596925285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:35 Heat of formation + Delta-G solvation = 21.389915 kcal Electronic energy + Delta-G solvation = -26467.001222 eV Core-core repulsion = 22870.613268 eV Total energy + Delta-G solvation = -3596.387954 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.03847 -39.83165 -37.47107 -36.24740 -34.15688 -33.12024 -32.62931 -31.81187 -30.47519 -28.65136 -27.74032 -25.23292 -25.00071 -23.35655 -21.97943 -21.85546 -20.96573 -20.21816 -19.00034 -18.12183 -17.16524 -16.71094 -16.35711 -15.94898 -15.26395 -15.10167 -14.82980 -14.37661 -13.96759 -13.84317 -13.72877 -13.53920 -13.07736 -12.97959 -12.96098 -12.67558 -12.50063 -12.36238 -12.28105 -11.86485 -11.37279 -11.34396 -11.28372 -11.07028 -10.60014 -10.58258 -10.25434 -10.10062 -9.91955 -9.70265 -9.62621 -9.37864 -9.14836 -8.80131 -8.54746 -8.17734 -7.86401 -6.09314 -4.10351 1.08118 1.31977 2.66472 3.34840 3.43563 3.46596 3.58190 3.76662 3.96666 4.16308 4.33712 4.46761 4.70172 4.80359 4.86215 4.88387 5.04321 5.06442 5.22832 5.30299 5.33972 5.43393 5.50149 5.54745 5.62267 5.71697 5.78476 5.82529 5.92628 5.95660 5.97702 6.12105 6.13598 6.24799 6.31200 6.40507 6.56323 6.65745 6.73685 6.82573 6.94190 7.11170 7.29659 7.41218 7.75935 7.96730 8.33220 8.50166 8.93886 8.96884 9.54280 11.02864 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016177 B = 0.003871 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.415563 B = 7231.105112 C = 8562.448798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.077 3.923 3 Si 0.867 3.133 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.252 1.252 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.005 3.995 10 H 0.033 0.967 11 C -0.102 4.102 12 C -0.137 4.137 13 C 0.114 3.886 14 N -0.623 5.623 15 C 0.689 3.311 16 O -0.528 6.528 17 N -0.674 5.674 18 C 0.393 3.607 19 C -0.218 4.218 20 C -0.035 4.035 21 C -0.198 4.198 22 C 0.157 3.843 23 N -0.469 5.469 24 C -0.073 4.073 25 C -0.119 4.119 26 C -0.069 4.069 27 C 0.130 3.870 28 H 0.265 0.735 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.410 0.590 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.190 1.635 6.879 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.126 4.126 3 Si 0.694 3.306 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.176 1.176 7 C -0.553 4.553 8 H 0.094 0.906 9 C -0.015 4.015 10 H 0.051 0.949 11 C -0.140 4.140 12 C -0.175 4.175 13 C -0.010 4.010 14 N -0.361 5.361 15 C 0.390 3.610 16 O -0.399 6.399 17 N -0.325 5.325 18 C 0.160 3.840 19 C -0.242 4.242 20 C -0.061 4.061 21 C -0.202 4.202 22 C 0.018 3.982 23 N -0.182 5.182 24 C -0.111 4.111 25 C -0.157 4.157 26 C -0.107 4.107 27 C 0.009 3.991 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.249 0.751 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.543 2.323 7.333 23.820 hybrid contribution 1.475 0.272 -0.484 1.576 sum 24.018 2.596 6.849 25.110 Atomic orbital electron populations 1.69899 1.06373 1.27149 1.49785 1.25041 0.94654 0.99063 0.93831 0.86995 0.81650 0.83834 0.78161 1.20654 1.21274 1.17604 1.20898 0.88621 0.94639 1.51154 0.90637 1.19496 0.96893 0.94216 0.90859 0.94908 1.21512 0.91613 0.99685 1.01199 1.22009 0.99244 1.01404 0.94879 1.21582 0.95401 0.89612 0.94356 1.47876 1.09156 1.24700 1.54319 1.16062 0.80565 0.83315 0.81060 1.91029 1.69150 1.34922 1.44758 1.43105 1.06210 1.24659 1.58570 1.17981 0.87043 0.88006 0.91000 1.21279 0.92318 1.02892 1.07727 1.20703 0.99829 0.91773 0.93771 1.21326 0.95974 0.99415 1.03465 1.21719 0.90305 0.93207 0.92973 1.66781 1.40074 1.02042 1.09348 1.21014 0.99071 0.91535 0.99439 1.22316 0.93579 0.97078 1.02682 1.20837 0.98004 0.92538 0.99338 1.22456 0.73700 1.02469 1.00500 0.92548 0.92634 0.92163 0.91701 0.92130 0.91329 0.92169 0.75147 0.84690 0.84927 0.89499 0.89248 0.90723 0.90088 0.90858 0.90404 0.89889 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.87 22.69 26.43 -169.99 -4.49 18.20 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.25 -6.72 5.79 56.52 0.33 -6.39 16 7 C -0.52 -14.20 8.87 -34.44 -0.31 -14.51 16 8 H 0.08 2.23 8.05 -52.49 -0.42 1.80 16 9 C 0.01 0.12 1.78 -91.65 -0.16 -0.04 16 10 H 0.03 0.81 5.71 -51.93 -0.30 0.51 16 11 C -0.10 -1.90 5.15 -26.69 -0.14 -2.04 16 12 C -0.14 -1.97 6.08 -26.61 -0.16 -2.13 16 13 C 0.11 1.56 6.43 -3.71 -0.02 1.54 16 14 N -0.62 -11.65 2.97 -178.50 -0.53 -12.18 16 15 C 0.69 13.73 8.26 -86.92 -0.72 13.01 16 16 O -0.53 -12.95 14.04 5.29 0.07 -12.88 16 17 N -0.67 -10.34 5.30 -15.85 -0.08 -10.43 16 18 C 0.39 6.16 7.42 -154.86 -1.15 5.01 16 19 C -0.22 -2.49 9.95 -39.26 -0.39 -2.88 16 20 C -0.03 -0.36 10.16 -39.30 -0.40 -0.76 16 21 C -0.20 -2.29 6.16 -104.15 -0.64 -2.93 16 22 C 0.16 2.32 7.31 -82.04 -0.60 1.72 16 23 N -0.47 -8.59 7.88 -8.30 -0.07 -8.66 16 24 C -0.07 -0.84 6.77 -26.80 -0.18 -1.03 16 25 C -0.12 -0.97 7.08 -25.32 -0.18 -1.15 16 26 C -0.07 -0.57 6.77 -26.90 -0.18 -0.75 16 27 C 0.13 2.90 5.40 -3.71 -0.02 2.88 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.61 5.57 -51.93 -0.29 0.32 16 35 H 0.41 4.54 6.16 -40.82 -0.25 4.29 16 36 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 2.13 5.56 -51.93 -0.29 1.84 16 45 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -36.25 352.81 -11.04 -47.29 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -6.68 Total: 1.96 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -5.35 Total: -1.91 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.09 Total: -57.98 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.07 Total: -12.88 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.49 Total: 18.20 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.25 -11.04 -47.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596925285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.678 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds