Wall clock time and date at job start Tue Mar 31 2020 10:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99619 * 2 1 4 4 H 1.48501 * 109.46939 * 274.93998 * 3 2 1 5 5 H 1.48494 * 109.47286 * 34.93634 * 3 2 1 6 6 H 1.48501 * 109.47299 * 154.94157 * 3 2 1 7 7 C 1.37880 * 120.00519 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99899 * 5.04486 * 7 2 1 9 9 C 1.50703 * 119.99833 * 184.76715 * 7 2 1 10 10 H 1.08998 * 109.49919 * 325.45228 * 9 7 2 11 11 C 1.53036 * 109.49526 * 205.38906 * 9 7 2 12 12 C 1.53041 * 109.53826 * 178.68717 * 11 9 7 13 13 C 1.53188 * 109.31491 * 61.36408 * 12 11 9 14 14 N 1.46922 * 108.77435 * 305.36542 * 13 12 11 15 15 C 1.34775 * 120.63172 * 233.60737 * 14 13 12 16 16 O 1.21589 * 119.99979 * 185.06048 * 15 14 13 17 17 N 1.34774 * 119.99947 * 5.05911 * 15 14 13 18 18 C 1.39395 * 119.99681 * 174.82184 * 17 15 14 19 19 C 1.39051 * 119.68250 * 185.08452 * 18 17 15 20 20 C 1.38280 * 118.92875 * 179.72553 * 19 18 17 21 21 C 1.38955 * 118.65975 * 0.54783 * 20 19 18 22 22 C 1.38063 * 119.46995 * 359.72775 * 21 20 19 23 23 N 1.32173 * 119.68902 * 5.36356 * 18 17 15 24 24 C 1.51490 * 109.60733 * 179.97438 * 22 21 20 25 25 C 1.54332 * 105.20760 * 17.20372 * 24 22 21 26 26 C 1.51249 * 130.56930 * 179.72332 * 21 20 19 27 27 C 1.46936 * 118.76315 * 53.59068 * 14 13 12 28 28 H 0.96990 * 120.00510 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46197 * 298.70708 * 11 9 7 30 30 H 1.09001 * 109.46370 * 58.68074 * 11 9 7 31 31 H 1.09002 * 109.49719 * 181.31890 * 12 11 9 32 32 H 1.09001 * 109.49611 * 301.41131 * 12 11 9 33 33 H 1.09001 * 109.58895 * 65.15090 * 13 12 11 34 34 H 1.09003 * 109.58604 * 185.58087 * 13 12 11 35 35 H 0.97000 * 120.00291 * 354.82867 * 17 15 14 36 36 H 1.08000 * 120.53247 * 359.97438 * 19 18 17 37 37 H 1.07994 * 120.66990 * 180.24179 * 20 19 18 38 38 H 1.08994 * 110.29796 * 136.13686 * 24 22 21 39 39 H 1.08999 * 110.29145 * 258.27131 * 24 22 21 40 40 H 1.08998 * 110.82413 * 91.88713 * 25 24 22 41 41 H 1.09006 * 110.82515 * 215.43965 * 25 24 22 42 42 H 1.08998 * 110.31468 * 43.94856 * 26 21 20 43 43 H 1.08998 * 110.31707 * 281.76298 * 26 21 20 44 44 H 1.09002 * 109.61282 * 186.63950 * 27 14 13 45 45 H 1.08998 * 109.56514 * 66.21571 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3921 2.1068 -1.3949 5 1 1.5025 2.6203 0.8017 6 1 3.5949 1.4125 0.5930 7 6 2.0046 -1.1940 0.0005 8 1 1.4679 -2.1275 -0.0813 9 6 3.5077 -1.1960 0.1090 10 1 3.9112 -0.3270 -0.4107 11 6 4.0638 -2.4735 -0.5242 12 6 5.5920 -2.4613 -0.4439 13 6 6.0218 -2.4236 1.0260 14 7 5.3741 -1.2778 1.6789 15 6 6.1054 -0.3668 2.3509 16 8 5.5513 0.5252 2.9639 17 7 7.4509 -0.4446 2.3436 18 6 8.2101 0.5567 2.9471 19 6 9.5964 0.5260 2.8444 20 6 10.3340 1.5302 3.4441 21 6 9.6605 2.5280 4.1381 22 6 8.2820 2.4959 4.2066 23 7 7.6057 1.5232 3.6161 24 6 7.7852 3.6795 5.0110 25 6 8.9703 4.6673 5.0518 26 6 10.1868 3.7313 4.8883 27 6 3.9139 -1.1433 1.5851 28 1 -0.4850 0.8399 -0.0004 29 1 3.6789 -3.3415 0.0112 30 1 3.7557 -2.5250 -1.5685 31 1 5.9883 -3.3603 -0.9159 32 1 5.9763 -1.5803 -0.9580 33 1 5.7164 -3.3461 1.5198 34 1 7.1047 -2.3150 1.0874 35 1 7.8909 -1.1972 1.9184 36 1 10.0890 -0.2672 2.3015 37 1 11.4119 1.5361 3.3787 38 1 6.9276 4.1380 4.5187 39 1 7.5196 3.3658 6.0205 40 1 8.9126 5.3760 4.2257 41 1 9.0079 5.1881 6.0087 42 1 10.9689 4.2247 4.3112 43 1 10.5678 3.4317 5.8646 44 1 3.6060 -0.1901 2.0150 45 1 3.4366 -1.9611 2.1250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596925285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:34 Heat of formation + Delta-G solvation = -2.273888 kcal Electronic energy + Delta-G solvation = -26468.027362 eV Core-core repulsion = 22870.613268 eV Total energy + Delta-G solvation = -3597.414094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.14459 -41.08495 -38.82380 -37.41130 -35.60788 -34.83809 -33.63238 -33.38267 -32.14176 -29.61317 -28.58708 -27.09784 -26.39805 -24.41819 -23.45726 -22.90885 -21.77209 -21.63514 -20.49038 -19.49600 -18.92453 -18.27081 -17.34138 -16.89838 -16.64685 -16.41386 -16.08092 -15.89827 -15.44969 -15.27335 -14.89785 -14.83841 -14.61938 -14.36354 -13.97101 -13.81754 -13.77450 -13.73379 -13.27989 -13.09062 -12.86727 -12.64371 -12.59301 -12.17298 -12.07956 -12.07368 -11.83710 -11.62212 -11.43445 -11.25656 -11.08778 -11.07472 -10.76089 -10.67212 -9.93043 -9.61529 -8.97933 -8.38839 -6.39864 0.12058 0.42336 1.18859 1.28296 1.39892 1.42690 2.07102 2.25075 2.62462 2.90037 3.00799 3.18148 3.57506 3.88889 3.92052 4.07005 4.09765 4.12622 4.13716 4.16012 4.28239 4.45973 4.52194 4.57745 4.64747 4.72308 4.80478 4.81884 4.89689 4.94069 4.96604 4.99991 5.01855 5.11162 5.16377 5.21343 5.29202 5.32412 5.38283 5.40920 5.57834 5.61497 5.66549 5.83650 5.89242 6.27170 6.68590 6.72751 7.22416 7.27002 7.56637 8.77455 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016177 B = 0.003871 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.415563 B = 7231.105112 C = 8562.448798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.029 3.971 3 Si 0.924 3.076 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.508 4.508 8 H 0.049 0.951 9 C 0.005 3.995 10 H 0.018 0.982 11 C -0.101 4.101 12 C -0.127 4.127 13 C 0.107 3.893 14 N -0.624 5.624 15 C 0.685 3.315 16 O -0.588 6.588 17 N -0.657 5.657 18 C 0.351 3.649 19 C -0.197 4.197 20 C -0.035 4.035 21 C -0.187 4.187 22 C 0.111 3.889 23 N -0.530 5.530 24 C -0.079 4.079 25 C -0.109 4.109 26 C -0.065 4.065 27 C 0.142 3.858 28 H 0.266 0.734 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.110 0.890 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.429 0.571 36 H 0.177 0.823 37 H 0.179 0.821 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.040 0.960 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.647 0.927 6.588 30.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.170 4.170 3 Si 0.751 3.249 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.547 4.547 8 H 0.067 0.933 9 C -0.014 4.014 10 H 0.036 0.964 11 C -0.138 4.138 12 C -0.165 4.165 13 C -0.015 4.015 14 N -0.362 5.362 15 C 0.386 3.614 16 O -0.463 6.463 17 N -0.311 5.311 18 C 0.119 3.881 19 C -0.220 4.220 20 C -0.060 4.060 21 C -0.190 4.190 22 C -0.027 4.027 23 N -0.244 5.244 24 C -0.117 4.117 25 C -0.147 4.147 26 C -0.102 4.102 27 C 0.019 3.981 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.272 0.728 36 H 0.194 0.806 37 H 0.196 0.804 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.059 0.941 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 28.085 1.586 7.017 28.992 hybrid contribution -0.167 0.443 -0.337 0.581 sum 27.919 2.029 6.680 28.778 Atomic orbital electron populations 1.70001 1.07655 1.27835 1.52375 1.25664 0.95147 1.01836 0.94353 0.86099 0.79643 0.80793 0.78404 1.19110 1.21900 1.18973 1.21250 0.91239 0.93206 1.48989 0.93292 1.19444 0.93970 0.96346 0.91680 0.96393 1.21432 0.95157 0.96880 1.00360 1.21955 0.95434 1.03460 0.95647 1.22002 0.97679 0.88262 0.93517 1.47740 1.07630 1.26094 1.54693 1.16290 0.82019 0.82575 0.80538 1.90988 1.70778 1.37287 1.47220 1.42731 1.04253 1.25530 1.58581 1.18428 0.88702 0.88315 0.92675 1.21710 0.90214 1.03721 1.06387 1.21279 1.01934 0.90521 0.92289 1.21835 0.94656 1.00301 1.02223 1.22208 0.92311 0.93720 0.94447 1.66568 1.42963 1.03852 1.11063 1.21150 0.99942 0.91859 0.98773 1.22335 0.91856 0.96345 1.04140 1.20946 0.98121 0.90983 1.00157 1.21849 0.76725 1.00188 0.99314 0.92468 0.92200 0.92540 0.87131 0.92579 0.89409 0.87752 0.72791 0.80573 0.80396 0.92073 0.89328 0.90614 0.87604 0.88416 0.88474 0.94124 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.05 13.96 21.45 0.30 -59.75 16 2 C 0.03 1.73 5.47 84.66 0.46 2.19 16 3 Si 0.92 49.45 26.43 68.60 1.81 51.27 16 4 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.29 -15.77 7.11 99.48 0.71 -15.07 16 6 H -0.27 -14.68 5.79 99.48 0.58 -14.10 16 7 C -0.51 -29.11 8.87 25.60 0.23 -28.88 16 8 H 0.05 3.01 8.05 -2.91 -0.02 2.99 16 9 C 0.01 0.26 1.78 -11.46 -0.02 0.24 16 10 H 0.02 0.90 5.71 -2.39 -0.01 0.88 16 11 C -0.10 -3.60 5.15 30.62 0.16 -3.44 16 12 C -0.13 -3.18 6.08 30.67 0.19 -2.99 16 13 C 0.11 2.55 6.43 86.36 0.56 3.10 16 14 N -0.62 -23.09 2.97 -836.90 -2.49 -25.58 16 15 C 0.68 27.65 8.26 179.06 1.48 29.13 16 16 O -0.59 -30.56 14.04 -3.99 -0.06 -30.62 16 17 N -0.66 -19.27 5.30 -322.31 -1.71 -20.98 16 18 C 0.35 10.67 7.42 132.98 0.99 11.66 16 19 C -0.20 -3.77 9.95 22.47 0.22 -3.55 16 20 C -0.03 -0.57 10.16 22.45 0.23 -0.34 16 21 C -0.19 -3.84 6.16 -19.56 -0.12 -3.96 16 22 C 0.11 3.32 7.31 42.69 0.31 3.63 16 23 N -0.53 -20.09 7.88 -180.19 -1.42 -21.51 16 24 C -0.08 -1.92 6.77 30.55 0.21 -1.71 16 25 C -0.11 -1.58 7.08 31.51 0.22 -1.35 16 26 C -0.06 -0.82 6.77 30.49 0.21 -0.61 16 27 C 0.14 6.57 5.40 86.36 0.47 7.04 16 28 H 0.27 16.09 8.31 -92.72 -0.77 15.32 16 29 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.10 1.58 5.57 -2.39 -0.01 1.57 16 35 H 0.43 8.03 6.16 -92.71 -0.57 7.46 16 36 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 37 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 39 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.10 0.83 8.14 -2.39 -0.02 0.82 16 43 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.04 2.21 5.56 -2.39 -0.01 2.19 16 45 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -88.62 352.81 2.53 -86.10 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.30 Total: 10.93 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 5.78 Total: 10.14 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -5.32 Total: -127.82 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.06 Total: -30.62 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 1.81 Total: 51.27 kcal Total: -88.62 2.53 -86.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596925285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.822 kcal (2) G-P(sol) polarization free energy of solvation -88.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds