Wall clock time and date at job start Tue Mar 31 2020 11:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86806 * 120.00057 * 2 1 4 4 H 1.48499 * 109.46958 * 272.44149 * 3 2 1 5 5 H 1.48500 * 109.46757 * 32.43938 * 3 2 1 6 6 H 1.48506 * 109.47014 * 152.43935 * 3 2 1 7 7 C 1.40035 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99452 * 347.71774 * 7 2 1 9 9 C 1.41534 * 120.00213 * 167.72227 * 7 2 1 10 10 C 1.41176 * 120.99962 * 329.40887 * 9 7 2 11 11 C 1.37587 * 119.02062 * 179.75209 * 10 9 7 12 12 N 1.32084 * 121.10385 * 0.27557 * 11 10 9 13 13 C 1.32469 * 122.23617 * 359.97438 * 12 11 10 14 14 N 1.39467 * 119.58013 * 180.02562 * 13 12 11 15 15 C 1.34782 * 120.00067 * 354.75063 * 14 13 12 16 16 O 1.21276 * 119.99895 * 4.86915 * 15 14 13 17 17 C 1.50691 * 119.99819 * 184.86566 * 15 14 13 18 18 H 1.08997 * 112.96250 * 307.85634 * 17 15 14 19 19 C 1.53941 * 113.75847 * 79.50765 * 17 15 14 20 20 C 1.53939 * 86.34198 * 138.03497 * 19 17 15 21 21 N 1.47966 * 86.18062 * 336.28024 * 20 19 17 22 22 C 1.46899 * 110.99913 * 137.58321 * 21 20 19 23 23 C 1.54265 * 110.03048 * 193.54966 * 22 21 20 24 24 C 1.54968 * 104.15924 * 217.13719 * 23 22 21 25 25 C 1.54893 * 102.77745 * 37.88629 * 24 23 22 26 26 C 1.53874 * 110.03393 * 76.33162 * 22 21 20 27 27 C 1.38592 * 120.84022 * 359.97438 * 13 12 11 28 28 H 0.96994 * 119.99705 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.48499 * 0.02734 * 10 9 7 30 30 H 1.07999 * 119.44467 * 180.25361 * 11 10 9 31 31 H 0.96993 * 119.99895 * 174.74598 * 14 13 12 32 32 H 1.08998 * 113.73447 * 252.39628 * 19 17 15 33 33 H 1.08997 * 113.73114 * 23.67439 * 19 17 15 34 34 H 1.08999 * 113.75953 * 90.59916 * 20 19 17 35 35 H 1.08999 * 113.76127 * 221.85351 * 20 19 17 36 36 H 1.09004 * 110.01825 * 314.93885 * 22 21 20 37 37 H 1.08999 * 110.48450 * 335.78090 * 23 22 21 38 38 H 1.08994 * 110.48787 * 98.42999 * 23 22 21 39 39 H 1.08999 * 110.72063 * 279.57811 * 24 23 22 40 40 H 1.08995 * 110.76594 * 156.22179 * 24 23 22 41 41 H 1.08997 * 110.48411 * 203.40896 * 25 24 23 42 42 H 1.08999 * 110.48806 * 80.76221 * 25 24 23 43 43 H 1.09001 * 110.03203 * 238.57040 * 26 22 21 44 44 H 1.09008 * 110.02929 * 359.94828 * 26 22 21 45 45 H 1.07994 * 120.60425 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4373 2.0762 -1.3988 5 1 1.4656 2.6372 0.7510 6 1 3.5639 1.4258 0.6478 7 6 2.0076 -1.2127 -0.0005 8 1 1.4861 -2.1374 0.1980 9 6 3.3987 -1.2266 -0.2612 10 6 3.9896 -0.2632 -1.1072 11 6 5.3467 -0.3117 -1.3284 12 7 6.0965 -1.2437 -0.7682 13 6 5.5906 -2.1729 0.0290 14 7 6.4338 -3.1308 0.5916 15 6 7.7345 -3.1729 0.2410 16 8 8.1919 -2.3245 -0.4950 17 6 8.6205 -4.2741 0.7637 18 1 8.5770 -4.3763 1.8480 19 6 8.4648 -5.6065 0.0084 20 6 9.9987 -5.7140 0.0822 21 7 9.9964 -4.2408 0.2205 22 6 10.9562 -3.8066 1.2442 23 6 10.7034 -2.3302 1.6133 24 6 12.1216 -1.7473 1.8375 25 6 12.9583 -2.4498 0.7395 26 6 12.3894 -3.8829 0.6893 27 6 4.2342 -2.2046 0.3119 28 1 -0.4849 0.8400 0.0004 29 1 3.3859 0.5033 -1.5703 30 1 5.8065 0.4245 -1.9711 31 1 6.0841 -3.7666 1.2352 32 1 7.9432 -6.3754 0.5782 33 1 8.0812 -5.4937 -1.0055 34 1 10.3602 -6.2375 0.9673 35 1 10.4589 -6.0696 -0.8396 36 1 10.8653 -4.4340 2.1310 37 1 10.2034 -1.8126 0.7947 38 1 10.1129 -2.2611 2.5269 39 1 12.4922 -2.0052 2.8296 40 1 12.1229 -0.6671 1.6922 41 1 14.0125 -2.4674 1.0159 42 1 12.8229 -1.9518 -0.2205 43 1 12.9942 -4.5466 1.3071 44 1 12.3727 -4.2429 -0.3395 45 1 3.8258 -2.9641 0.9620 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602121957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:19 Heat of formation + Delta-G solvation = 35.034414 kcal Electronic energy + Delta-G solvation = -26134.066276 eV Core-core repulsion = 22538.269992 eV Total energy + Delta-G solvation = -3595.796284 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87517 -39.26369 -37.77075 -36.86550 -34.43346 -33.62834 -31.30400 -30.25451 -29.29453 -28.84194 -26.77963 -25.98413 -25.63756 -22.53279 -21.92606 -20.72312 -20.66973 -19.91859 -19.36365 -18.11129 -17.15964 -16.72251 -16.08041 -15.67753 -15.52046 -14.85744 -14.66821 -14.34474 -14.31619 -14.13071 -13.80425 -13.42867 -13.17460 -12.93517 -12.87261 -12.63040 -12.46966 -11.99563 -11.58864 -11.48036 -11.23390 -11.20863 -11.15320 -11.11127 -10.82423 -10.75518 -10.70022 -10.64831 -10.59994 -9.91353 -9.72141 -9.48233 -9.35919 -8.84943 -8.25287 -7.85156 -7.23557 -7.03442 -4.73690 2.29067 2.61420 3.07045 3.15517 3.18182 3.25902 3.31786 3.90467 3.91989 4.21348 4.45628 4.48383 4.56950 4.63671 4.82228 4.92030 5.02786 5.12824 5.21344 5.27182 5.38905 5.40295 5.41609 5.56241 5.57803 5.62537 5.73381 5.80669 5.81017 5.87755 5.93992 5.98607 6.12007 6.25693 6.31484 6.34495 6.40830 6.45070 6.54454 6.95849 7.03804 7.09543 7.16773 7.60825 7.78152 8.00500 8.21922 8.42379 8.65280 8.76470 9.44290 9.98073 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.003032 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.303550 B = 9231.776619 C = 9946.163590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.085 3.915 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.245 1.245 7 C -0.440 4.440 8 H 0.094 0.906 9 C 0.129 3.871 10 C -0.301 4.301 11 C 0.138 3.862 12 N -0.553 5.553 13 C 0.362 3.638 14 N -0.663 5.663 15 C 0.512 3.488 16 O -0.452 6.452 17 C 0.009 3.991 18 H 0.096 0.904 19 C -0.130 4.130 20 C 0.001 3.999 21 N -0.442 5.442 22 C 0.048 3.952 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.112 4.112 27 C -0.292 4.292 28 H 0.288 0.712 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.406 0.594 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.188 -9.103 4.861 20.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.470 4.470 8 H 0.112 0.888 9 C 0.121 3.879 10 C -0.324 4.324 11 C -0.016 4.016 12 N -0.272 5.272 13 C 0.136 3.864 14 N -0.310 5.310 15 C 0.295 3.705 16 O -0.318 6.318 17 C -0.104 4.104 18 H 0.114 0.886 19 C -0.168 4.168 20 C -0.127 4.127 21 N -0.165 5.165 22 C -0.061 4.061 23 C -0.162 4.162 24 C -0.160 4.160 25 C -0.158 4.158 26 C -0.150 4.150 27 C -0.318 4.318 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.147 0.853 31 H 0.241 0.759 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 19.429 -8.021 3.597 21.325 hybrid contribution -1.160 -0.091 1.375 1.801 sum 18.269 -8.112 4.972 20.598 Atomic orbital electron populations 1.69603 1.08069 1.30524 1.34737 1.26170 0.94830 1.01844 0.90620 0.86246 0.80828 0.79303 0.79190 1.19382 1.21946 1.16805 1.19464 0.90788 0.95721 1.41031 0.88849 1.17683 0.93265 0.89419 0.87548 1.21936 0.96316 1.06175 1.08005 1.21841 0.90262 0.94187 0.95301 1.67335 1.38644 1.06125 1.15090 1.18089 0.86814 0.88847 0.92603 1.43465 1.09119 1.33573 1.44824 1.20070 0.81880 0.86175 0.82408 1.90788 1.72491 1.36555 1.32007 1.23431 0.92468 0.95231 0.99274 0.88589 1.23308 0.96674 0.94766 1.02059 1.23868 0.96279 0.90186 1.02391 1.68598 0.99721 1.12069 1.36103 1.22894 0.93418 0.97067 0.92745 1.22516 0.97231 0.94433 1.02035 1.22449 0.95166 0.99973 0.98386 1.22300 0.98558 0.95437 0.99484 1.22085 0.93880 0.97358 1.01669 1.21206 0.91065 1.07979 1.11506 0.90185 0.87389 0.85346 0.75912 0.90113 0.88480 0.91173 0.88943 0.93581 0.88812 0.92408 0.91964 0.91465 0.92027 0.91259 0.92197 0.90806 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.90 13.92 55.55 0.77 -20.13 16 2 C 0.09 2.19 5.48 -17.34 -0.10 2.09 16 3 Si 0.92 20.62 24.42 -169.99 -4.15 16.47 16 4 H -0.27 -5.82 6.66 56.52 0.38 -5.44 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.24 -5.73 6.66 56.52 0.38 -5.35 16 7 C -0.44 -11.57 9.67 -37.65 -0.36 -11.94 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 9 C 0.13 3.24 5.16 -106.55 -0.55 2.69 16 10 C -0.30 -7.30 7.11 -38.70 -0.28 -7.58 16 11 C 0.14 3.22 11.15 -17.68 -0.20 3.03 16 12 N -0.55 -13.35 7.85 -12.53 -0.10 -13.45 16 13 C 0.36 8.01 7.42 -154.71 -1.15 6.86 16 14 N -0.66 -11.43 5.39 -11.49 -0.06 -11.49 16 15 C 0.51 8.79 7.30 -10.99 -0.08 8.71 16 16 O -0.45 -9.80 13.80 5.56 0.08 -9.73 16 17 C 0.01 0.11 3.17 -67.80 -0.21 -0.10 16 18 H 0.10 0.96 7.88 -51.93 -0.41 0.55 16 19 C -0.13 -1.28 7.84 -25.79 -0.20 -1.48 16 20 C 0.00 0.01 7.60 -2.76 -0.02 -0.01 16 21 N -0.44 -5.45 5.28 -222.75 -1.18 -6.63 16 22 C 0.05 0.52 2.24 -66.60 -0.15 0.37 16 23 C -0.12 -1.55 5.88 -25.03 -0.15 -1.70 16 24 C -0.12 -1.26 6.91 -24.69 -0.17 -1.43 16 25 C -0.12 -1.17 6.83 -25.07 -0.17 -1.34 16 26 C -0.11 -1.09 6.30 -25.61 -0.16 -1.25 16 27 C -0.29 -6.64 9.73 -38.47 -0.37 -7.02 16 28 H 0.29 6.76 8.29 -40.82 -0.34 6.42 16 29 H 0.11 2.56 4.43 -52.49 -0.23 2.33 16 30 H 0.13 2.65 8.06 -52.49 -0.42 2.22 16 31 H 0.41 5.34 8.70 -40.82 -0.36 4.99 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.10 1.12 8.09 -51.93 -0.42 0.70 16 34 H 0.07 0.51 7.72 -51.93 -0.40 0.11 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.45 7.73 -51.93 -0.40 0.05 16 37 H 0.09 1.52 6.85 -51.93 -0.36 1.17 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.77 7.82 -51.92 -0.41 0.36 16 45 H 0.11 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -31.44 357.70 -10.38 -41.82 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.82 Total: 7.83 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -4.32 Total: -10.09 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.56 Total: -51.69 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.15 Total: 16.47 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.44 -10.38 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602121957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.859 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds