Wall clock time and date at job start Tue Mar 31 2020 11:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86806 * 120.00057 * 2 1 4 4 H 1.48499 * 109.46958 * 272.44149 * 3 2 1 5 5 H 1.48500 * 109.46757 * 32.43938 * 3 2 1 6 6 H 1.48506 * 109.47014 * 152.43935 * 3 2 1 7 7 C 1.40035 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99452 * 347.71774 * 7 2 1 9 9 C 1.41534 * 120.00213 * 167.72227 * 7 2 1 10 10 C 1.41176 * 120.99962 * 329.40887 * 9 7 2 11 11 C 1.37587 * 119.02062 * 179.75209 * 10 9 7 12 12 N 1.32084 * 121.10385 * 0.27557 * 11 10 9 13 13 C 1.32469 * 122.23617 * 359.97438 * 12 11 10 14 14 N 1.39467 * 119.58013 * 180.02562 * 13 12 11 15 15 C 1.34782 * 120.00067 * 354.75063 * 14 13 12 16 16 O 1.21276 * 119.99895 * 4.86915 * 15 14 13 17 17 C 1.50691 * 119.99819 * 184.86566 * 15 14 13 18 18 H 1.08997 * 112.96250 * 307.85634 * 17 15 14 19 19 C 1.53941 * 113.75847 * 79.50765 * 17 15 14 20 20 C 1.53939 * 86.34198 * 138.03497 * 19 17 15 21 21 N 1.47966 * 86.18062 * 336.28024 * 20 19 17 22 22 C 1.46899 * 110.99913 * 137.58321 * 21 20 19 23 23 C 1.54265 * 110.03048 * 193.54966 * 22 21 20 24 24 C 1.54968 * 104.15924 * 217.13719 * 23 22 21 25 25 C 1.54893 * 102.77745 * 37.88629 * 24 23 22 26 26 C 1.53874 * 110.03393 * 76.33162 * 22 21 20 27 27 C 1.38592 * 120.84022 * 359.97438 * 13 12 11 28 28 H 0.96994 * 119.99705 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.48499 * 0.02734 * 10 9 7 30 30 H 1.07999 * 119.44467 * 180.25361 * 11 10 9 31 31 H 0.96993 * 119.99895 * 174.74598 * 14 13 12 32 32 H 1.08998 * 113.73447 * 252.39628 * 19 17 15 33 33 H 1.08997 * 113.73114 * 23.67439 * 19 17 15 34 34 H 1.08999 * 113.75953 * 90.59916 * 20 19 17 35 35 H 1.08999 * 113.76127 * 221.85351 * 20 19 17 36 36 H 1.09004 * 110.01825 * 314.93885 * 22 21 20 37 37 H 1.08999 * 110.48450 * 335.78090 * 23 22 21 38 38 H 1.08994 * 110.48787 * 98.42999 * 23 22 21 39 39 H 1.08999 * 110.72063 * 279.57811 * 24 23 22 40 40 H 1.08995 * 110.76594 * 156.22179 * 24 23 22 41 41 H 1.08997 * 110.48411 * 203.40896 * 25 24 23 42 42 H 1.08999 * 110.48806 * 80.76221 * 25 24 23 43 43 H 1.09001 * 110.03203 * 238.57040 * 26 22 21 44 44 H 1.09008 * 110.02929 * 359.94828 * 26 22 21 45 45 H 1.07994 * 120.60425 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4373 2.0762 -1.3988 5 1 1.4656 2.6372 0.7510 6 1 3.5639 1.4258 0.6478 7 6 2.0076 -1.2127 -0.0005 8 1 1.4861 -2.1374 0.1980 9 6 3.3987 -1.2266 -0.2612 10 6 3.9896 -0.2632 -1.1072 11 6 5.3467 -0.3117 -1.3284 12 7 6.0965 -1.2437 -0.7682 13 6 5.5906 -2.1729 0.0290 14 7 6.4338 -3.1308 0.5916 15 6 7.7345 -3.1729 0.2410 16 8 8.1919 -2.3245 -0.4950 17 6 8.6205 -4.2741 0.7637 18 1 8.5770 -4.3763 1.8480 19 6 8.4648 -5.6065 0.0084 20 6 9.9987 -5.7140 0.0822 21 7 9.9964 -4.2408 0.2205 22 6 10.9562 -3.8066 1.2442 23 6 10.7034 -2.3302 1.6133 24 6 12.1216 -1.7473 1.8375 25 6 12.9583 -2.4498 0.7395 26 6 12.3894 -3.8829 0.6893 27 6 4.2342 -2.2046 0.3119 28 1 -0.4849 0.8400 0.0004 29 1 3.3859 0.5033 -1.5703 30 1 5.8065 0.4245 -1.9711 31 1 6.0841 -3.7666 1.2352 32 1 7.9432 -6.3754 0.5782 33 1 8.0812 -5.4937 -1.0055 34 1 10.3602 -6.2375 0.9673 35 1 10.4589 -6.0696 -0.8396 36 1 10.8653 -4.4340 2.1310 37 1 10.2034 -1.8126 0.7947 38 1 10.1129 -2.2611 2.5269 39 1 12.4922 -2.0052 2.8296 40 1 12.1229 -0.6671 1.6922 41 1 14.0125 -2.4674 1.0159 42 1 12.8229 -1.9518 -0.2205 43 1 12.9942 -4.5466 1.3071 44 1 12.3727 -4.2429 -0.3395 45 1 3.8258 -2.9641 0.9620 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602121957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:18 Heat of formation + Delta-G solvation = 14.141083 kcal Electronic energy + Delta-G solvation = -26134.972279 eV Core-core repulsion = 22538.269992 eV Total energy + Delta-G solvation = -3596.702287 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.92605 -40.78653 -39.23681 -37.77827 -36.17310 -35.38376 -33.21427 -31.30857 -30.64793 -29.77469 -27.97357 -27.78010 -26.46257 -24.05018 -23.69833 -21.97140 -21.50408 -20.87171 -20.50618 -19.83717 -18.47375 -17.94922 -17.57423 -17.23448 -16.55894 -16.17380 -16.11530 -16.01821 -15.58810 -15.35082 -14.93116 -14.79668 -14.64064 -14.42583 -14.27987 -13.87277 -13.42132 -13.32506 -13.01652 -12.80872 -12.71156 -12.62355 -12.36534 -12.01053 -11.98561 -11.92824 -11.76766 -11.64109 -11.48626 -11.40654 -11.38505 -11.19677 -10.87631 -10.17596 -9.78986 -9.54731 -8.97848 -8.96057 -6.73618 0.52556 0.74382 1.26537 1.39266 1.46427 1.81771 1.96411 2.08923 2.67146 2.94629 3.38516 3.49116 3.59980 3.65527 3.72558 3.84354 4.05007 4.12025 4.23564 4.37233 4.44072 4.44162 4.50774 4.56958 4.61165 4.66989 4.72729 4.74190 4.77672 4.83410 4.88526 4.96209 5.03913 5.09022 5.12524 5.18991 5.19886 5.24383 5.31557 5.43673 5.47448 5.49194 5.71462 6.06268 6.16184 6.22078 6.49480 6.52829 6.69598 7.31984 7.70256 8.09852 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023879 B = 0.003032 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.303550 B = 9231.776619 C = 9946.163590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.055 3.945 3 Si 0.966 3.034 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.467 4.467 8 H 0.070 0.930 9 C 0.115 3.885 10 C -0.312 4.312 11 C 0.133 3.867 12 N -0.571 5.571 13 C 0.362 3.638 14 N -0.652 5.652 15 C 0.508 3.492 16 O -0.502 6.502 17 C 0.015 3.985 18 H 0.126 0.874 19 C -0.123 4.123 20 C 0.012 3.988 21 N -0.477 5.477 22 C 0.049 3.951 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.108 4.108 27 C -0.296 4.296 28 H 0.298 0.702 29 H 0.112 0.888 30 H 0.153 0.847 31 H 0.426 0.574 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.048 0.952 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.435 -10.575 6.217 23.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.162 4.162 3 Si 0.791 3.209 4 H -0.180 1.180 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.498 4.498 8 H 0.088 0.912 9 C 0.106 3.894 10 C -0.335 4.335 11 C -0.021 4.021 12 N -0.291 5.291 13 C 0.135 3.865 14 N -0.301 5.301 15 C 0.294 3.706 16 O -0.372 6.372 17 C -0.098 4.098 18 H 0.144 0.856 19 C -0.161 4.161 20 C -0.116 4.116 21 N -0.201 5.201 22 C -0.059 4.059 23 C -0.165 4.165 24 C -0.157 4.157 25 C -0.158 4.158 26 C -0.146 4.146 27 C -0.321 4.321 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.171 0.829 31 H 0.265 0.735 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.082 0.918 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.666 -9.542 4.975 24.192 hybrid contribution -1.745 0.295 0.940 2.004 sum 19.921 -9.247 5.915 22.745 Atomic orbital electron populations 1.69613 1.08926 1.31845 1.35824 1.26748 0.95396 1.03994 0.90105 0.85495 0.78989 0.76636 0.79797 1.18021 1.20263 1.18527 1.19454 0.91602 0.95448 1.43313 0.91230 1.17879 0.93121 0.90487 0.87888 1.22030 0.96803 1.06398 1.08295 1.22259 0.90091 0.94494 0.95273 1.67470 1.39243 1.06729 1.15627 1.18355 0.87408 0.88994 0.91778 1.43502 1.09062 1.32763 1.44733 1.21104 0.81739 0.86548 0.81246 1.90766 1.73315 1.38804 1.34309 1.23462 0.91682 0.93817 1.00817 0.85614 1.23292 0.97850 0.94007 1.00904 1.23932 0.95521 0.88259 1.03848 1.68566 0.99823 1.14556 1.37150 1.22941 0.93710 0.95920 0.93364 1.22459 0.98014 0.95771 1.00219 1.22455 0.94079 0.99461 0.99690 1.22304 0.99755 0.95481 0.98272 1.22084 0.93519 0.97430 1.01540 1.21415 0.91339 1.07884 1.11498 0.89134 0.87003 0.82945 0.73526 0.86761 0.90777 0.88248 0.88717 0.91288 0.93340 0.92431 0.89851 0.92385 0.89932 0.93352 0.89692 0.91824 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.03 13.92 21.84 0.30 -43.72 16 2 C 0.05 2.84 5.48 85.29 0.47 3.30 16 3 Si 0.97 42.36 24.42 68.60 1.68 44.04 16 4 H -0.25 -10.56 6.66 99.48 0.66 -9.90 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.26 -12.05 6.66 99.48 0.66 -11.39 16 7 C -0.47 -25.27 9.67 23.52 0.23 -25.04 16 8 H 0.07 3.97 8.06 -2.91 -0.02 3.94 16 9 C 0.11 5.82 5.16 -21.11 -0.11 5.71 16 10 C -0.31 -15.16 7.11 22.84 0.16 -15.00 16 11 C 0.13 6.19 11.15 84.50 0.94 7.13 16 12 N -0.57 -27.64 7.85 -193.54 -1.52 -29.16 16 13 C 0.36 15.89 7.42 132.75 0.98 16.88 16 14 N -0.65 -21.78 5.39 -308.67 -1.66 -23.45 16 15 C 0.51 17.08 7.30 87.65 0.64 17.72 16 16 O -0.50 -22.15 13.80 -3.02 -0.04 -22.19 16 17 C 0.02 0.33 3.17 44.27 0.14 0.47 16 18 H 0.13 2.03 7.88 -2.39 -0.02 2.01 16 19 C -0.12 -2.05 7.84 31.24 0.24 -1.80 16 20 C 0.01 0.18 7.60 86.41 0.66 0.84 16 21 N -0.48 -10.82 5.28 -858.64 -4.53 -15.35 16 22 C 0.05 0.95 2.24 45.64 0.10 1.05 16 23 C -0.13 -3.06 5.88 31.70 0.19 -2.87 16 24 C -0.12 -2.30 6.91 31.91 0.22 -2.08 16 25 C -0.12 -2.17 6.83 31.67 0.22 -1.95 16 26 C -0.11 -1.81 6.30 31.32 0.20 -1.61 16 27 C -0.30 -13.46 9.73 22.99 0.22 -13.24 16 28 H 0.30 14.05 8.29 -92.71 -0.77 13.28 16 29 H 0.11 5.26 4.43 -2.91 -0.01 5.25 16 30 H 0.15 6.18 8.06 -2.91 -0.02 6.16 16 31 H 0.43 10.35 8.70 -92.71 -0.81 9.54 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.60 8.09 -2.39 -0.02 1.59 16 34 H 0.10 0.92 7.72 -2.39 -0.02 0.90 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.03 7.73 -2.38 -0.02 1.01 16 37 H 0.05 1.63 6.85 -2.39 -0.02 1.61 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 1.21 7.82 -2.38 -0.02 1.19 16 45 H 0.13 5.19 8.06 -2.91 -0.02 5.16 16 Total: -1.00 -71.01 357.70 -0.16 -71.18 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.11 Total: 29.15 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 5.50 Total: -10.49 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -7.41 Total: -111.68 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.04 Total: -22.19 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.68 Total: 44.04 kcal Total: -71.01 -0.16 -71.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602121957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.317 kcal (2) G-P(sol) polarization free energy of solvation -71.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds