Wall clock time and date at job start Tue Mar 31 2020 10:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99817 * 2 1 4 4 H 1.48493 * 109.47486 * 270.00273 * 3 2 1 5 5 H 1.48505 * 109.47410 * 30.00449 * 3 2 1 6 6 H 1.48500 * 109.47094 * 150.00002 * 3 2 1 7 7 C 1.37877 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99847 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00269 * 179.97438 * 7 2 1 10 10 N 1.46896 * 109.47224 * 185.02222 * 9 7 2 11 11 C 1.46899 * 111.00009 * 295.10040 * 10 9 7 12 12 C 1.53238 * 109.34204 * 187.25723 * 11 10 9 13 13 N 1.47082 * 108.51987 * 306.16778 * 12 11 10 14 14 C 1.34776 * 120.88139 * 231.19048 * 13 12 11 15 15 O 1.21276 * 119.99723 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.00078 * 179.97438 * 14 13 12 17 17 H 1.08997 * 115.54823 * 34.32781 * 16 14 13 18 18 C 1.52999 * 117.49881 * 248.62077 * 16 14 13 19 19 C 1.53001 * 117.49715 * 179.97438 * 16 14 13 20 20 H 1.08992 * 117.49977 * 359.97438 * 19 16 14 21 21 C 1.50700 * 117.49665 * 214.97880 * 19 16 14 22 22 C 1.38665 * 120.41634 * 119.97805 * 21 19 16 23 23 C 1.38639 * 118.41998 * 180.02562 * 22 21 19 24 24 C 1.38221 * 119.15814 * 0.02562 * 23 22 21 25 25 N 1.31856 * 120.76553 * 359.97438 * 24 23 22 26 26 C 1.31882 * 121.72943 * 0.02562 * 25 24 23 27 27 C 1.47080 * 118.23848 * 51.45530 * 13 12 11 28 28 C 1.46893 * 111.00157 * 59.40024 * 10 9 7 29 29 H 0.97005 * 120.00439 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.46844 * 65.02136 * 9 7 2 31 31 H 1.09006 * 109.46827 * 305.02341 * 9 7 2 32 32 H 1.08994 * 109.49641 * 67.28848 * 11 10 9 33 33 H 1.09010 * 109.51279 * 307.22347 * 11 10 9 34 34 H 1.09000 * 109.63386 * 186.45784 * 12 11 10 35 35 H 1.09000 * 109.78844 * 65.96738 * 12 11 10 36 36 H 1.09002 * 117.49859 * 145.02092 * 18 16 14 37 37 H 1.09002 * 117.49756 * 359.97438 * 18 16 14 38 38 H 1.07999 * 120.79674 * 0.04489 * 22 21 19 39 39 H 1.07999 * 120.41816 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.61741 * 180.02562 * 24 23 22 41 41 H 1.07992 * 119.61909 * 179.72310 * 26 25 24 42 42 H 1.09000 * 109.62900 * 68.25300 * 27 13 12 43 43 H 1.08998 * 109.63245 * 188.83835 * 27 13 12 44 44 H 1.09002 * 109.49465 * 292.70631 * 28 10 9 45 45 H 1.08998 * 109.49898 * 52.75929 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 7 4.0011 -2.5736 -0.1229 11 6 3.6286 -3.3702 1.0538 12 6 4.3076 -4.7417 0.9740 13 7 3.9747 -5.3530 -0.3217 14 6 3.4830 -6.6061 -0.3893 15 8 3.3101 -7.2453 0.6267 16 6 3.1481 -7.2129 -1.7275 17 1 3.7973 -6.9194 -2.5525 18 6 1.6710 -7.4571 -2.0428 19 6 2.5941 -8.6391 -1.7377 20 1 2.4723 -9.1385 -0.7767 21 6 2.9870 -9.5299 -2.8880 22 6 3.6713 -10.7137 -2.6573 23 6 4.0127 -11.5014 -3.7459 24 6 3.6626 -11.0833 -5.0159 25 7 3.0117 -9.9511 -5.1978 26 6 2.6708 -9.1768 -4.1861 27 6 4.1981 -4.5629 -1.5419 28 6 3.5180 -3.1963 -1.3625 29 1 -0.4851 0.8401 0.0004 30 1 3.8752 -0.7603 0.9303 31 1 3.8745 -0.6040 -0.8428 32 1 2.5467 -3.5007 1.0771 33 1 3.9525 -2.8562 1.9589 34 1 3.9458 -5.3771 1.7824 35 1 5.3880 -4.6239 1.0564 36 1 1.3481 -7.3241 -3.0753 37 1 0.9414 -7.1792 -1.2820 38 1 3.9318 -11.0152 -1.6535 39 1 4.5454 -12.4300 -3.6032 40 1 3.9245 -11.6913 -5.8692 41 1 2.1420 -8.2543 -4.3745 42 1 5.2680 -4.4251 -1.6981 43 1 3.7639 -5.0799 -2.3976 44 1 2.4376 -3.3292 -1.3057 45 1 3.7615 -2.5558 -2.2102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602200903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:49 Heat of formation + Delta-G solvation = 19.899125 kcal Electronic energy + Delta-G solvation = -25804.286639 eV Core-core repulsion = 22207.834039 eV Total energy + Delta-G solvation = -3596.452600 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71060 -40.94010 -39.30493 -37.61571 -36.03911 -34.35173 -33.37146 -32.29923 -31.68847 -30.41612 -27.54870 -25.86126 -25.25910 -24.49596 -24.18038 -23.45156 -22.03083 -21.42821 -19.87444 -18.90165 -18.67958 -18.00625 -17.39280 -16.85560 -16.59258 -16.32248 -16.12701 -16.05115 -15.81631 -15.28467 -15.20670 -14.83491 -14.77710 -14.45309 -14.01679 -13.94128 -13.82971 -13.51871 -13.14515 -13.05652 -12.96590 -12.72004 -12.49476 -12.25434 -12.20195 -12.06762 -11.91967 -11.85311 -11.65875 -11.55711 -10.88229 -10.79868 -10.65203 -10.38178 -9.80953 -9.76167 -9.04916 -8.32841 -6.38957 0.09876 0.33492 1.36264 1.38193 1.40211 1.49840 1.90041 2.33224 2.64404 3.02747 3.03499 3.20705 3.27412 3.56347 3.62240 3.72607 3.84285 3.97804 4.02468 4.05416 4.10704 4.12107 4.24324 4.33751 4.36996 4.51960 4.57661 4.58770 4.70635 4.74487 4.85393 4.86550 4.92028 4.99717 5.02198 5.02958 5.08785 5.18603 5.22376 5.36014 5.44198 5.47114 5.77351 6.01574 6.26060 6.31615 6.40194 6.68041 7.03036 7.07008 7.28489 8.83565 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.022695 B = 0.002693 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.454931 B =10394.911259 C =10867.400008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.244 1.244 7 C -0.550 4.550 8 H 0.029 0.971 9 C 0.161 3.839 10 N -0.525 5.525 11 C 0.053 3.947 12 C 0.125 3.875 13 N -0.607 5.607 14 C 0.539 3.461 15 O -0.586 6.586 16 C -0.176 4.176 17 H 0.149 0.851 18 C -0.136 4.136 19 C -0.073 4.073 20 H 0.115 0.885 21 C -0.109 4.109 22 C -0.076 4.076 23 C -0.164 4.164 24 C 0.082 3.918 25 N -0.509 5.509 26 C 0.089 3.911 27 C 0.119 3.881 28 C 0.047 3.953 29 H 0.266 0.734 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.005 0.995 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.012 0.988 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.502 -19.746 -8.666 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.167 1.167 7 C -0.589 4.589 8 H 0.047 0.953 9 C 0.033 3.967 10 N -0.248 5.248 11 C -0.076 4.076 12 C 0.002 3.998 13 N -0.338 5.338 14 C 0.329 3.671 15 O -0.467 6.467 16 C -0.197 4.197 17 H 0.167 0.833 18 C -0.174 4.174 19 C -0.093 4.093 20 H 0.133 0.867 21 C -0.111 4.111 22 C -0.102 4.102 23 C -0.183 4.183 24 C -0.074 4.074 25 N -0.217 5.217 26 C -0.067 4.067 27 C -0.004 4.004 28 C -0.082 4.082 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.023 0.977 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.152 0.848 37 H 0.110 0.890 38 H 0.164 0.836 39 H 0.183 0.817 40 H 0.196 0.804 41 H 0.183 0.817 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.031 0.969 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.583 -19.687 -9.013 24.555 hybrid contribution -1.214 0.894 1.339 2.016 sum 10.369 -18.793 -7.674 22.794 Atomic orbital electron populations 1.70090 1.08513 1.28216 1.52105 1.25962 0.95499 1.03596 0.93775 0.85639 0.79457 0.78046 0.79353 1.18851 1.21448 1.16737 1.21881 0.92848 0.92948 1.51234 0.95274 1.20068 0.91618 0.87663 0.97306 1.62450 1.57634 1.02687 1.02015 1.22242 0.96694 0.93860 0.94823 1.21672 1.00627 0.92018 0.85449 1.48211 1.62934 1.13866 1.08825 1.20126 0.75638 0.80887 0.90477 1.90637 1.55717 1.62152 1.38185 1.22369 1.00939 0.99934 0.96463 0.83325 1.23235 0.90079 0.99406 1.04636 1.20850 1.02573 0.87702 0.98154 0.86707 1.20097 1.00254 0.96362 0.94361 1.21758 0.94458 0.92946 1.01013 1.22465 1.01074 1.01923 0.92870 1.23295 0.93505 0.92599 0.98012 1.67747 1.12078 1.06145 1.35771 1.22891 0.96919 0.99276 0.87629 1.22190 1.02120 0.89755 0.86291 1.22413 0.96616 0.95606 0.93541 0.92540 0.95129 0.94373 0.97665 0.89865 0.90129 0.89009 0.84777 0.88962 0.83552 0.81749 0.80392 0.81725 0.88580 0.87034 0.96929 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 2 C 0.01 0.55 5.47 84.65 0.46 1.01 16 3 Si 0.95 42.60 27.37 68.60 1.88 44.47 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.24 -10.05 6.69 99.48 0.67 -9.39 16 7 C -0.55 -30.35 8.30 25.60 0.21 -30.13 16 8 H 0.03 1.83 6.13 -2.91 -0.02 1.81 16 9 C 0.16 7.22 4.18 85.56 0.36 7.58 16 10 N -0.52 -20.01 4.83 -898.90 -4.34 -24.35 16 11 C 0.05 1.99 5.24 86.38 0.45 2.45 16 12 C 0.13 3.87 6.60 86.35 0.57 4.44 16 13 N -0.61 -17.78 3.00 -817.03 -2.45 -20.23 16 14 C 0.54 16.03 7.49 87.66 0.66 16.69 16 15 O -0.59 -21.41 15.71 -3.02 -0.05 -21.46 16 16 C -0.18 -3.79 4.60 -11.54 -0.05 -3.84 16 17 H 0.15 2.49 6.87 -2.39 -0.02 2.48 16 18 C -0.14 -2.70 9.57 30.61 0.29 -2.41 16 19 C -0.07 -1.47 5.58 -11.52 -0.06 -1.54 16 20 H 0.11 2.64 7.67 -2.39 -0.02 2.62 16 21 C -0.11 -1.94 5.62 -19.77 -0.11 -2.05 16 22 C -0.08 -1.16 9.89 22.47 0.22 -0.94 16 23 C -0.16 -2.01 10.11 22.36 0.23 -1.78 16 24 C 0.08 1.20 11.18 84.69 0.95 2.14 16 25 N -0.51 -9.99 10.36 -195.85 -2.03 -12.02 16 26 C 0.09 1.62 10.47 84.67 0.89 2.51 16 27 C 0.12 2.95 6.48 86.51 0.56 3.51 16 28 C 0.05 1.62 5.17 86.54 0.45 2.07 16 29 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 30 H 0.03 1.37 7.47 -2.39 -0.02 1.36 16 31 H 0.04 1.65 7.29 -2.38 -0.02 1.63 16 32 H 0.00 0.23 6.92 -2.39 -0.02 0.21 16 33 H 0.08 2.99 8.06 -2.38 -0.02 2.97 16 34 H 0.08 2.63 7.06 -2.39 -0.02 2.61 16 35 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.13 1.97 6.21 -2.39 -0.01 1.96 16 37 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 39 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.17 2.48 6.04 -2.91 -0.02 2.46 16 42 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.11 2.14 5.78 -2.39 -0.01 2.13 16 44 H 0.01 0.52 6.79 -2.39 -0.02 0.51 16 45 H 0.09 2.85 8.11 -2.39 -0.02 2.83 16 Total: -1.00 -73.57 359.39 0.33 -73.24 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.96 Total: 18.88 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 6.07 Total: -0.30 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -8.52 Total: -114.84 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.05 Total: -21.46 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.47 kcal Total: -73.57 0.33 -73.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.142 kcal (2) G-P(sol) polarization free energy of solvation -73.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds