Wall clock time and date at job start Tue Mar 31 2020 11:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99888 * 2 1 4 4 H 1.48502 * 109.46830 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47525 * 300.00071 * 3 2 1 6 6 H 1.48499 * 109.47107 * 60.00586 * 3 2 1 7 7 C 1.37877 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99533 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00267 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47261 * 179.97438 * 9 7 2 11 11 C 1.46891 * 111.00201 * 170.00201 * 10 9 7 12 12 C 1.53244 * 109.34212 * 187.25695 * 11 10 9 13 13 N 1.47080 * 108.52017 * 306.16768 * 12 11 10 14 14 C 1.34777 * 120.88279 * 231.18964 * 13 12 11 15 15 O 1.21506 * 120.00084 * 5.84505 * 14 13 12 16 16 C 1.48153 * 120.00001 * 185.57361 * 14 13 12 17 17 C 1.39839 * 120.92021 * 38.13238 * 16 14 13 18 18 C 1.38126 * 119.00149 * 179.97438 * 17 16 14 19 19 N 1.31833 * 120.89694 * 359.97438 * 18 17 16 20 20 C 1.31802 * 122.04759 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.55058 * 180.02562 * 20 19 18 22 22 C 1.52993 * 117.49940 * 163.74630 * 21 20 19 23 23 C 1.52994 * 117.49722 * 95.08522 * 21 20 19 24 24 C 1.38176 * 120.89469 * 359.74057 * 20 19 18 25 25 C 1.47086 * 118.23565 * 51.45397 * 13 12 11 26 26 C 1.46902 * 111.00093 * 294.30670 * 10 9 7 27 27 H 0.97002 * 119.99621 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47079 * 60.00177 * 9 7 2 29 29 H 1.08994 * 109.47391 * 300.00106 * 9 7 2 30 30 H 1.08998 * 109.49933 * 67.29700 * 11 10 9 31 31 H 1.09001 * 109.51921 * 307.22444 * 11 10 9 32 32 H 1.08997 * 109.63088 * 186.45818 * 12 11 10 33 33 H 1.08999 * 109.62975 * 65.87578 * 12 11 10 34 34 H 1.08000 * 120.50291 * 0.02562 * 17 16 14 35 35 H 1.07998 * 119.55361 * 180.02562 * 18 17 16 36 36 H 1.09002 * 115.55000 * 309.41518 * 21 20 19 37 37 H 1.09005 * 117.49744 * 0.02562 * 22 21 20 38 38 H 1.08999 * 117.50103 * 145.01572 * 22 21 20 39 39 H 1.09005 * 117.49785 * 214.97398 * 23 21 20 40 40 H 1.08992 * 117.50559 * 359.97438 * 23 21 20 41 41 H 1.07999 * 120.49406 * 180.25994 * 24 20 19 42 42 H 1.09002 * 109.62414 * 68.25434 * 25 13 12 43 43 H 1.08999 * 109.62932 * 188.83078 * 25 13 12 44 44 H 1.09001 * 109.48992 * 292.70219 * 26 10 9 45 45 H 1.09000 * 109.49557 * 52.78414 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0018 11 6 1.5213 -4.8936 0.2363 12 6 2.5639 -6.0034 0.4079 13 7 3.4609 -5.9860 -0.7577 14 6 3.7106 -7.1118 -1.4553 15 8 3.1119 -8.1356 -1.1912 16 6 4.7108 -7.0995 -2.5482 17 6 5.8925 -6.3608 -2.4325 18 6 6.7979 -6.3780 -3.4756 19 7 6.5598 -7.0779 -4.5671 20 6 5.4592 -7.7875 -4.7168 21 6 5.2448 -8.5674 -5.9884 22 6 4.1715 -9.6576 -5.9760 23 6 5.6531 -10.0418 -5.9901 24 6 4.5020 -7.8307 -3.7212 25 6 4.0828 -4.7085 -1.1381 26 6 2.9757 -3.6485 -1.2522 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 0.8790 -5.1261 -0.6132 31 1 0.9165 -4.8200 1.1401 32 1 2.0634 -6.9696 0.4702 33 1 3.1403 -5.8271 1.3161 34 1 6.0947 -5.7862 -1.5407 35 1 7.7136 -5.8111 -3.3955 36 1 5.3816 -8.0062 -6.9128 37 1 3.6201 -9.8105 -5.0482 38 1 3.6023 -9.8139 -6.8923 39 1 6.0581 -10.4509 -6.9158 40 1 6.0772 -10.4478 -5.0717 41 1 3.6044 -8.4176 -3.8490 42 1 4.8023 -4.4102 -0.3756 43 1 4.5869 -4.8183 -2.0982 44 1 2.3132 -3.8984 -2.0810 45 1 3.4261 -2.6716 -1.4278 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:22 Heat of formation + Delta-G solvation = 46.478227 kcal Electronic energy + Delta-G solvation = -25947.090921 eV Core-core repulsion = 22351.790878 eV Total energy + Delta-G solvation = -3595.300043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08944 -39.63917 -37.60517 -37.23970 -34.62219 -33.11000 -32.35260 -31.26666 -30.63800 -28.40255 -26.03128 -24.94627 -24.48835 -23.30516 -22.68724 -22.15530 -21.47922 -20.50473 -19.09876 -17.50143 -17.04715 -16.44041 -16.36861 -15.88552 -15.57391 -15.23198 -15.03340 -14.75781 -14.62246 -14.42218 -13.95437 -13.84833 -13.65905 -13.54616 -12.94125 -12.63747 -12.33014 -12.02426 -11.97046 -11.66459 -11.37184 -11.21473 -11.09782 -10.96463 -10.83211 -10.79194 -10.69052 -10.58891 -10.31338 -10.01674 -9.94208 -9.55955 -9.32718 -9.11389 -8.63340 -8.51121 -7.41175 -6.11116 -4.13435 0.58936 0.79850 2.61201 2.89699 3.25362 3.30427 3.33275 3.36738 3.59244 3.87668 4.19021 4.34454 4.43972 4.55432 4.61078 4.69194 4.75861 4.80894 4.86263 5.12667 5.21912 5.24404 5.29487 5.30929 5.37258 5.46945 5.52398 5.55387 5.55958 5.65187 5.74787 5.77164 5.80525 5.86997 5.91629 6.19947 6.31923 6.35139 6.38784 6.54545 7.14726 7.21532 7.34347 7.68239 7.68393 7.94380 8.01019 8.05353 8.40807 8.93830 9.51427 10.99734 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018265 B = 0.002932 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.614811 B = 9547.668607 C =10201.900831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.118 3.882 13 N -0.597 5.597 14 C 0.557 3.443 15 O -0.539 6.539 16 C -0.074 4.074 17 C -0.149 4.149 18 C 0.102 3.898 19 N -0.467 5.467 20 C 0.156 3.844 21 C -0.108 4.108 22 C -0.174 4.174 23 C -0.161 4.161 24 C -0.119 4.119 25 C 0.098 3.902 26 C 0.050 3.950 27 H 0.262 0.738 28 H -0.009 1.009 29 H 0.032 0.968 30 H 0.027 0.973 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.165 0.835 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.144 0.856 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.025 0.975 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.478 -16.199 -8.554 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.004 4.004 13 N -0.329 5.329 14 C 0.344 3.656 15 O -0.417 6.417 16 C -0.085 4.085 17 C -0.169 4.169 18 C -0.055 4.055 19 N -0.176 5.176 20 C 0.018 3.982 21 C -0.127 4.127 22 C -0.212 4.212 23 C -0.198 4.198 24 C -0.140 4.140 25 C -0.024 4.024 26 C -0.079 4.079 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.182 0.818 36 H 0.142 0.858 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.162 0.838 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.044 0.956 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.922 -16.509 -8.659 22.128 hybrid contribution -0.851 1.071 0.115 1.373 sum 11.070 -15.438 -8.544 20.829 Atomic orbital electron populations 1.69969 1.06112 1.26812 1.50729 1.25004 0.94871 0.99411 0.95317 0.86437 0.80033 0.83351 0.77572 1.19604 1.21095 1.20970 1.21158 0.93478 0.89818 1.50406 0.91738 1.19736 0.89987 0.87135 0.96290 1.62096 1.28180 1.02733 1.33053 1.22406 0.94895 0.90462 1.01127 1.21845 0.91753 0.99841 0.86979 1.48140 1.46467 1.08292 1.29989 1.18232 0.82121 0.83613 0.81612 1.90760 1.50446 1.32005 1.68454 1.20334 0.95544 0.97431 0.95162 1.22551 0.94149 0.98806 1.01394 1.22754 0.98858 0.95616 0.88277 1.67260 1.19958 1.06099 1.24316 1.20282 0.89450 0.94459 0.93995 1.20760 1.05675 0.90530 0.95747 1.23153 0.92057 1.01766 1.04182 1.22982 0.97645 0.95443 1.03744 1.22021 1.00938 0.98563 0.92432 1.22521 0.96639 0.82400 1.00872 1.22422 0.95027 0.98972 0.91471 0.92876 0.99084 0.94945 0.95435 0.89828 0.89178 0.90488 0.83476 0.81799 0.85802 0.88055 0.87798 0.88027 0.88648 0.83849 0.90121 0.89500 0.95633 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -13.63 8.41 -34.44 -0.29 -13.92 16 8 H 0.06 1.68 7.13 -52.49 -0.37 1.31 16 9 C 0.19 4.82 4.72 -4.98 -0.02 4.80 16 10 N -0.54 -10.80 4.62 -235.48 -1.09 -11.88 16 11 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 12 C 0.12 1.76 6.61 -3.60 -0.02 1.74 16 13 N -0.60 -8.77 3.00 -173.18 -0.52 -9.29 16 14 C 0.56 8.40 7.41 -12.19 -0.09 8.31 16 15 O -0.54 -9.56 16.38 5.36 0.09 -9.47 16 16 C -0.07 -0.94 5.21 -104.65 -0.55 -1.49 16 17 C -0.15 -1.56 7.51 -39.02 -0.29 -1.85 16 18 C 0.10 1.01 11.17 -17.59 -0.20 0.81 16 19 N -0.47 -5.45 10.25 -9.52 -0.10 -5.54 16 20 C 0.16 1.76 6.46 -82.63 -0.53 1.23 16 21 C -0.11 -0.98 6.21 -91.78 -0.57 -1.55 16 22 C -0.17 -1.31 9.80 -26.70 -0.26 -1.58 16 23 C -0.16 -1.22 10.24 -26.70 -0.27 -1.49 16 24 C -0.12 -1.44 8.99 -39.02 -0.35 -1.79 16 25 C 0.10 1.35 5.04 -3.36 -0.02 1.33 16 26 C 0.05 0.89 5.47 -3.46 -0.02 0.87 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 29 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 32 H 0.09 1.33 7.04 -51.93 -0.37 0.96 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.15 1.30 6.42 -52.49 -0.34 0.96 16 35 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.10 0.81 6.37 -51.93 -0.33 0.48 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.14 1.66 6.24 -52.49 -0.33 1.34 16 42 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 43 H 0.09 1.03 4.79 -51.93 -0.25 0.78 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 1.86 6.67 -51.93 -0.35 1.52 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -31.73 362.90 -10.56 -42.29 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.52 Total: 0.31 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -3.61 Total: -2.46 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.97 Total: -51.99 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.73 -10.56 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.764 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds