Wall clock time and date at job start Tue Mar 31 2020 11:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99888 * 2 1 4 4 H 1.48502 * 109.46830 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47525 * 300.00071 * 3 2 1 6 6 H 1.48499 * 109.47107 * 60.00586 * 3 2 1 7 7 C 1.37877 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99533 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00267 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47261 * 179.97438 * 9 7 2 11 11 C 1.46891 * 111.00201 * 170.00201 * 10 9 7 12 12 C 1.53244 * 109.34212 * 187.25695 * 11 10 9 13 13 N 1.47080 * 108.52017 * 306.16768 * 12 11 10 14 14 C 1.34777 * 120.88279 * 231.18964 * 13 12 11 15 15 O 1.21506 * 120.00084 * 5.84505 * 14 13 12 16 16 C 1.48153 * 120.00001 * 185.57361 * 14 13 12 17 17 C 1.39839 * 120.92021 * 38.13238 * 16 14 13 18 18 C 1.38126 * 119.00149 * 179.97438 * 17 16 14 19 19 N 1.31833 * 120.89694 * 359.97438 * 18 17 16 20 20 C 1.31802 * 122.04759 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.55058 * 180.02562 * 20 19 18 22 22 C 1.52993 * 117.49940 * 163.74630 * 21 20 19 23 23 C 1.52994 * 117.49722 * 95.08522 * 21 20 19 24 24 C 1.38176 * 120.89469 * 359.74057 * 20 19 18 25 25 C 1.47086 * 118.23565 * 51.45397 * 13 12 11 26 26 C 1.46902 * 111.00093 * 294.30670 * 10 9 7 27 27 H 0.97002 * 119.99621 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47079 * 60.00177 * 9 7 2 29 29 H 1.08994 * 109.47391 * 300.00106 * 9 7 2 30 30 H 1.08998 * 109.49933 * 67.29700 * 11 10 9 31 31 H 1.09001 * 109.51921 * 307.22444 * 11 10 9 32 32 H 1.08997 * 109.63088 * 186.45818 * 12 11 10 33 33 H 1.08999 * 109.62975 * 65.87578 * 12 11 10 34 34 H 1.08000 * 120.50291 * 0.02562 * 17 16 14 35 35 H 1.07998 * 119.55361 * 180.02562 * 18 17 16 36 36 H 1.09002 * 115.55000 * 309.41518 * 21 20 19 37 37 H 1.09005 * 117.49744 * 0.02562 * 22 21 20 38 38 H 1.08999 * 117.50103 * 145.01572 * 22 21 20 39 39 H 1.09005 * 117.49785 * 214.97398 * 23 21 20 40 40 H 1.08992 * 117.50559 * 359.97438 * 23 21 20 41 41 H 1.07999 * 120.49406 * 180.25994 * 24 20 19 42 42 H 1.09002 * 109.62414 * 68.25434 * 25 13 12 43 43 H 1.08999 * 109.62932 * 188.83078 * 25 13 12 44 44 H 1.09001 * 109.48992 * 292.70219 * 26 10 9 45 45 H 1.09000 * 109.49557 * 52.78414 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0018 11 6 1.5213 -4.8936 0.2363 12 6 2.5639 -6.0034 0.4079 13 7 3.4609 -5.9860 -0.7577 14 6 3.7106 -7.1118 -1.4553 15 8 3.1119 -8.1356 -1.1912 16 6 4.7108 -7.0995 -2.5482 17 6 5.8925 -6.3608 -2.4325 18 6 6.7979 -6.3780 -3.4756 19 7 6.5598 -7.0779 -4.5671 20 6 5.4592 -7.7875 -4.7168 21 6 5.2448 -8.5674 -5.9884 22 6 4.1715 -9.6576 -5.9760 23 6 5.6531 -10.0418 -5.9901 24 6 4.5020 -7.8307 -3.7212 25 6 4.0828 -4.7085 -1.1381 26 6 2.9757 -3.6485 -1.2522 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 0.8790 -5.1261 -0.6132 31 1 0.9165 -4.8200 1.1401 32 1 2.0634 -6.9696 0.4702 33 1 3.1403 -5.8271 1.3161 34 1 6.0947 -5.7862 -1.5407 35 1 7.7136 -5.8111 -3.3955 36 1 5.3816 -8.0062 -6.9128 37 1 3.6201 -9.8105 -5.0482 38 1 3.6023 -9.8139 -6.8923 39 1 6.0581 -10.4509 -6.9158 40 1 6.0772 -10.4478 -5.0717 41 1 3.6044 -8.4176 -3.8490 42 1 4.8023 -4.4102 -0.3756 43 1 4.5869 -4.8183 -2.0982 44 1 2.3132 -3.8984 -2.0810 45 1 3.4261 -2.6716 -1.4278 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602204766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:21 Heat of formation + Delta-G solvation = 26.486640 kcal Electronic energy + Delta-G solvation = -25947.957821 eV Core-core repulsion = 22351.790878 eV Total energy + Delta-G solvation = -3596.166944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.06809 -40.72421 -39.02737 -37.92839 -36.12913 -34.59058 -33.82388 -32.24275 -31.76170 -30.09034 -27.62311 -25.85104 -25.61719 -24.60954 -23.84272 -23.17816 -22.59545 -21.68969 -20.25595 -18.58534 -18.50694 -17.97064 -17.35239 -16.90470 -16.72283 -16.46906 -16.26723 -16.02660 -15.83228 -15.46250 -15.35188 -15.23009 -14.80054 -14.68258 -14.33405 -14.05371 -13.56372 -13.38389 -13.07165 -12.80057 -12.70809 -12.64442 -12.47623 -12.37241 -12.28127 -12.16651 -11.83483 -11.68849 -11.42242 -11.39998 -11.28775 -10.93812 -10.63393 -10.48814 -9.91302 -9.90864 -9.12241 -8.21033 -6.31401 -0.33553 -0.02031 1.43236 1.44326 1.48103 1.57274 1.76391 2.40688 2.55160 2.84729 3.09262 3.12099 3.18748 3.21015 3.70489 3.78780 3.84533 3.91721 3.96223 4.01490 4.11267 4.15121 4.17164 4.20034 4.35773 4.40988 4.48502 4.63847 4.66628 4.73371 4.78929 4.80367 4.88908 4.90340 4.95169 5.01349 5.14615 5.16494 5.19062 5.21105 5.33282 5.53711 5.63216 6.00298 6.11361 6.26518 6.51720 6.83011 6.84743 6.86833 7.38883 8.90665 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018265 B = 0.002932 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.614811 B = 9547.668607 C =10201.900831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.072 0.928 9 C 0.207 3.793 10 N -0.535 5.535 11 C 0.042 3.958 12 C 0.127 3.873 13 N -0.599 5.599 14 C 0.558 3.442 15 O -0.571 6.571 16 C -0.091 4.091 17 C -0.144 4.144 18 C 0.106 3.894 19 N -0.482 5.482 20 C 0.152 3.848 21 C -0.124 4.124 22 C -0.170 4.170 23 C -0.153 4.153 24 C -0.132 4.132 25 C 0.111 3.889 26 C 0.049 3.951 27 H 0.264 0.736 28 H -0.043 1.043 29 H 0.006 0.994 30 H 0.012 0.988 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.169 0.831 35 H 0.199 0.801 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.139 0.861 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.009 0.991 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.352 -16.061 -9.069 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.179 1.179 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.557 4.557 8 H 0.090 0.910 9 C 0.081 3.919 10 N -0.260 5.260 11 C -0.087 4.087 12 C 0.004 3.996 13 N -0.330 5.330 14 C 0.347 3.653 15 O -0.451 6.451 16 C -0.102 4.102 17 C -0.164 4.164 18 C -0.050 4.050 19 N -0.192 5.192 20 C 0.014 3.986 21 C -0.142 4.142 22 C -0.207 4.207 23 C -0.191 4.191 24 C -0.152 4.152 25 C -0.011 4.011 26 C -0.080 4.080 27 H 0.072 0.928 28 H -0.026 1.026 29 H 0.025 0.975 30 H 0.030 0.970 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.186 0.814 35 H 0.216 0.784 36 H 0.149 0.851 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.105 0.895 41 H 0.157 0.843 42 H 0.121 0.879 43 H 0.129 0.871 44 H 0.027 0.973 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.820 -16.390 -9.180 23.927 hybrid contribution -1.769 0.973 0.251 2.035 sum 13.050 -15.417 -8.929 22.084 Atomic orbital electron populations 1.70109 1.07946 1.27857 1.51902 1.25957 0.95686 1.03398 0.94828 0.85307 0.79323 0.78403 0.77436 1.17937 1.20814 1.20771 1.21486 0.93921 0.90535 1.49798 0.90957 1.19390 0.90100 0.88974 0.93405 1.62038 1.27025 1.02521 1.34397 1.22452 0.95638 0.90041 1.00589 1.21740 0.91372 0.98572 0.87877 1.48194 1.46358 1.08646 1.29817 1.18570 0.82037 0.83028 0.81616 1.90738 1.51856 1.33155 1.69378 1.20266 0.96099 0.99110 0.94706 1.22763 0.93104 0.98219 1.02287 1.23349 0.99628 0.94781 0.87284 1.67353 1.20032 1.06581 1.25207 1.20566 0.89096 0.94413 0.94481 1.20864 1.07198 0.91100 0.95077 1.23209 0.92171 1.00789 1.04576 1.23048 0.97583 0.94152 1.04279 1.22077 1.01323 0.98969 0.92857 1.22525 0.95096 0.80434 1.03008 1.22471 0.95564 1.00194 0.89748 0.92770 1.02550 0.97546 0.96974 0.89592 0.88943 0.88774 0.81389 0.78381 0.85135 0.88960 0.86098 0.86137 0.89455 0.84282 0.87894 0.87141 0.97315 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.55 13.29 21.45 0.28 -55.27 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 3 Si 0.97 42.55 29.54 68.60 2.03 44.57 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.52 -27.95 8.41 25.60 0.22 -27.73 16 8 H 0.07 3.71 7.13 -2.91 -0.02 3.69 16 9 C 0.21 10.71 4.72 85.56 0.40 11.12 16 10 N -0.54 -21.75 4.62 -898.91 -4.15 -25.90 16 11 C 0.04 1.48 5.62 86.39 0.49 1.96 16 12 C 0.13 3.67 6.61 86.35 0.57 4.24 16 13 N -0.60 -16.77 3.00 -820.10 -2.46 -19.24 16 14 C 0.56 16.37 7.41 86.88 0.64 17.02 16 15 O -0.57 -20.26 16.38 -3.73 -0.06 -20.32 16 16 C -0.09 -2.20 5.21 -19.88 -0.10 -2.30 16 17 C -0.14 -2.60 7.51 22.63 0.17 -2.43 16 18 C 0.11 1.78 11.17 84.67 0.95 2.73 16 19 N -0.48 -10.25 10.25 -184.03 -1.89 -12.13 16 20 C 0.15 3.26 6.46 42.55 0.27 3.54 16 21 C -0.12 -2.09 6.21 -11.54 -0.07 -2.16 16 22 C -0.17 -2.40 9.80 30.62 0.30 -2.10 16 23 C -0.15 -2.11 10.24 30.62 0.31 -1.80 16 24 C -0.13 -3.12 8.99 22.63 0.20 -2.92 16 25 C 0.11 2.80 5.04 86.50 0.44 3.24 16 26 C 0.05 1.73 5.47 86.54 0.47 2.20 16 27 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 28 H -0.04 -2.48 8.12 -2.38 -0.02 -2.50 16 29 H 0.01 0.36 7.97 -2.39 -0.02 0.34 16 30 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.09 2.95 7.99 -2.39 -0.02 2.93 16 32 H 0.09 2.68 7.04 -2.39 -0.02 2.67 16 33 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.17 2.28 6.42 -2.91 -0.02 2.26 16 35 H 0.20 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 1.47 6.37 -2.38 -0.02 1.46 16 38 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 41 H 0.14 3.30 6.24 -2.91 -0.02 3.29 16 42 H 0.10 2.23 8.06 -2.39 -0.02 2.21 16 43 H 0.11 2.31 4.79 -2.39 -0.01 2.30 16 44 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.09 3.34 6.67 -2.39 -0.02 3.33 16 Total: -1.00 -69.88 362.90 0.47 -69.41 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.00 Total: 13.84 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.72 Total: 5.02 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -8.22 Total: -112.53 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.06 Total: -20.32 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -69.88 0.47 -69.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.898 kcal (2) G-P(sol) polarization free energy of solvation -69.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds