Wall clock time and date at job start Tue Mar 31 2020 11:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00428 * 2 1 4 4 H 1.48497 * 109.46699 * 269.99911 * 3 2 1 5 5 H 1.48499 * 109.47003 * 29.99469 * 3 2 1 6 6 H 1.48491 * 109.47416 * 149.99956 * 3 2 1 7 7 C 1.37879 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00050 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00379 * 179.97438 * 7 2 1 10 10 C 1.53123 * 109.52570 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.27788 * 177.56259 * 10 9 7 12 12 N 1.46842 * 109.52190 * 300.81892 * 11 10 9 13 13 C 1.38459 * 110.99638 * 185.84170 * 12 11 10 14 14 C 1.39406 * 119.53440 * 180.02562 * 13 12 11 15 15 C 1.36858 * 119.37446 * 179.97438 * 14 13 12 16 16 C 1.40349 * 118.49606 * 0.02562 * 15 14 13 17 17 C 1.47539 * 120.47829 * 179.97438 * 16 15 14 18 18 O 1.21597 * 119.99763 * 359.97438 * 17 16 15 19 19 N 1.34770 * 120.00073 * 180.02562 * 17 16 15 20 20 C 1.46504 * 120.00117 * 180.02562 * 19 17 16 21 21 C 1.52993 * 117.49968 * 223.61938 * 20 19 17 22 22 C 1.52993 * 117.50188 * 154.99446 * 20 19 17 23 23 C 1.39560 * 119.04787 * 359.97438 * 16 15 14 24 24 N 1.31683 * 120.52153 * 359.72129 * 23 16 15 25 25 C 1.46848 * 111.20069 * 61.74451 * 12 11 10 26 26 C 1.53032 * 109.52348 * 298.25721 * 25 12 11 27 27 H 0.97004 * 119.99529 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.57244 * 59.84439 * 9 7 2 29 29 H 1.09000 * 109.50367 * 57.61804 * 10 9 7 30 30 H 1.09006 * 109.50264 * 297.50143 * 10 9 7 31 31 H 1.09002 * 109.46126 * 60.83950 * 11 10 9 32 32 H 1.09000 * 109.45809 * 180.80452 * 11 10 9 33 33 H 1.07998 * 120.31246 * 359.97438 * 14 13 12 34 34 H 1.07998 * 120.74944 * 179.97438 * 15 14 13 35 35 H 0.97005 * 120.00439 * 359.97438 * 19 17 16 36 36 H 1.09008 * 115.54852 * 9.32588 * 20 19 17 37 37 H 1.09003 * 117.49943 * 359.97438 * 21 20 19 38 38 H 1.09000 * 117.50181 * 145.01469 * 21 20 19 39 39 H 1.09004 * 117.50280 * 214.97533 * 22 20 19 40 40 H 1.08997 * 117.50082 * 359.97438 * 22 20 19 41 41 H 1.08000 * 119.74359 * 179.97438 * 23 16 15 42 42 H 1.09003 * 109.46014 * 58.27448 * 25 12 11 43 43 H 1.08995 * 109.46374 * 178.23478 * 25 12 11 44 44 H 1.08996 * 109.50421 * 179.11872 * 26 25 12 45 45 H 1.08997 * 109.50237 * 299.24201 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0232 -2.6374 0.0001 11 6 5.5523 -2.6313 -0.0620 12 7 5.9912 -1.9376 -1.2794 13 6 7.3643 -2.0271 -1.4338 14 6 7.9726 -1.4272 -2.5354 15 6 9.3300 -1.5173 -2.6844 16 6 10.0652 -2.2167 -1.7148 17 6 11.5305 -2.3414 -1.8325 18 8 12.1099 -1.8366 -2.7750 19 7 12.2269 -3.0156 -0.8961 20 6 13.6821 -3.1389 -1.0127 21 6 14.3002 -4.5086 -0.7257 22 6 14.4774 -3.3646 0.2746 23 6 9.3901 -2.7926 -0.6375 24 7 8.0829 -2.6772 -0.5286 25 6 5.5519 -0.5363 -1.2799 26 6 4.0228 -0.4798 -1.2542 27 1 -0.4850 0.8401 -0.0004 28 1 3.8771 -0.6777 0.8875 29 1 3.6258 -3.1645 -0.8673 30 1 3.6979 -3.1387 0.9117 31 1 5.9492 -2.1162 0.8128 32 1 5.9192 -3.6576 -0.0764 33 1 7.3782 -0.8963 -3.2642 34 1 9.8242 -1.0613 -3.5295 35 1 11.7647 -3.4186 -0.1445 36 1 14.1447 -2.5304 -1.7900 37 1 13.6243 -5.3180 -0.4497 38 1 15.1696 -4.8018 -1.3143 39 1 15.4634 -2.9052 0.3442 40 1 13.9181 -3.4210 1.2084 41 1 9.9447 -3.3336 0.1149 42 1 5.9489 -0.0310 -0.3994 43 1 5.9187 -0.0410 -2.1788 44 1 3.6974 0.5603 -1.2387 45 1 3.6255 -0.9730 -2.1413 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611617605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:13 Heat of formation + Delta-G solvation = 41.348309 kcal Electronic energy + Delta-G solvation = -25516.029390 eV Core-core repulsion = 21920.506897 eV Total energy + Delta-G solvation = -3595.522493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.07562 -39.87028 -38.17001 -37.32174 -34.42765 -33.33529 -32.76416 -31.89917 -30.43136 -29.87007 -26.39404 -24.29869 -24.05424 -22.86299 -22.42916 -22.17356 -21.51234 -20.84577 -19.04888 -18.37592 -17.42089 -17.12591 -16.76591 -16.20303 -15.35345 -15.27221 -14.95766 -14.89387 -14.59193 -14.24179 -14.08974 -13.53903 -13.41227 -13.15207 -13.05509 -12.96916 -12.69335 -12.36121 -12.08115 -12.03167 -11.82003 -11.72089 -11.04900 -10.99924 -10.71816 -10.47953 -10.21198 -10.15257 -10.05999 -9.99459 -9.69440 -9.53836 -9.19518 -9.16161 -9.01524 -8.57934 -8.08155 -6.11048 -4.10117 0.50564 1.14329 2.54499 2.65473 3.20472 3.31241 3.32938 3.39551 3.54804 3.78433 4.17229 4.29358 4.35656 4.45543 4.49361 4.52187 4.63934 4.87391 4.92455 5.15327 5.16238 5.29217 5.32955 5.42829 5.46065 5.47311 5.59186 5.59774 5.71782 5.79426 5.86543 5.93672 6.02471 6.08493 6.20606 6.23126 6.32860 6.57047 6.62375 6.79484 6.96186 7.07955 7.17489 7.23460 7.50002 7.71676 7.79514 7.87904 8.48808 8.93619 9.51089 11.02329 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.031679 B = 0.002473 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.664522 B =11319.422839 C =11625.547095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.511 4.511 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.102 4.102 11 C 0.066 3.934 12 N -0.469 5.469 13 C 0.353 3.647 14 C -0.200 4.200 15 C 0.008 3.992 16 C -0.240 4.240 17 C 0.578 3.422 18 O -0.540 6.540 19 N -0.702 5.702 20 C 0.081 3.919 21 C -0.194 4.194 22 C -0.190 4.190 23 C 0.170 3.830 24 N -0.526 5.526 25 C 0.060 3.940 26 C -0.120 4.120 27 H 0.264 0.736 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.401 0.599 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.153 0.847 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.105 -5.914 -1.070 26.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.093 0.907 9 C -0.008 4.008 10 C -0.140 4.140 11 C -0.060 4.060 12 N -0.183 5.183 13 C 0.120 3.880 14 C -0.222 4.222 15 C -0.018 4.018 16 C -0.248 4.248 17 C 0.366 3.634 18 O -0.417 6.417 19 N -0.353 5.353 20 C -0.025 4.025 21 C -0.232 4.232 22 C -0.228 4.228 23 C 0.009 3.991 24 N -0.240 5.240 25 C -0.065 4.065 26 C -0.158 4.158 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.237 0.763 36 H 0.157 0.843 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.170 0.830 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 25.546 -6.002 -1.427 26.280 hybrid contribution 0.878 1.311 0.218 1.593 sum 26.423 -4.690 -1.209 26.863 Atomic orbital electron populations 1.69897 1.06257 1.26908 1.50761 1.25040 0.94698 0.98991 0.94575 0.86892 0.79923 0.83809 0.77918 1.20466 1.22404 1.19189 1.21017 0.88609 0.94499 1.50733 0.90722 1.19228 0.96971 0.91922 0.92639 1.21611 0.91034 0.99421 1.01891 1.22181 0.97437 0.98432 0.87945 1.58747 1.05140 1.15912 1.38522 1.20309 0.89560 0.88862 0.89250 1.21369 0.95105 1.05678 1.00098 1.21209 0.92895 0.91358 0.96299 1.20571 0.93569 1.09452 1.01163 1.17978 0.86509 0.77273 0.81617 1.90767 1.71046 1.47764 1.32147 1.45276 1.06503 1.56245 1.27253 1.21600 0.80284 1.00086 1.00545 1.23443 1.03677 0.92692 1.03416 1.23394 1.02195 1.02907 0.94318 1.22676 0.89843 0.92511 0.94092 1.67792 1.07316 1.21255 1.27668 1.22454 0.99316 0.83764 1.00971 1.22134 0.90095 1.00843 1.02701 0.92654 0.95705 0.91683 0.91573 0.93459 0.90360 0.83765 0.83680 0.76331 0.84335 0.88369 0.87898 0.87775 0.88335 0.82966 0.93757 0.90647 0.92519 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 2 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 3 Si 0.88 21.19 24.37 -169.99 -4.14 17.05 16 4 H -0.28 -6.42 6.89 56.52 0.39 -6.03 16 5 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.27 -6.09 6.53 56.52 0.37 -5.72 16 7 C -0.51 -13.84 9.14 -34.44 -0.31 -14.15 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C 0.01 0.25 1.75 -91.65 -0.16 0.09 16 10 C -0.10 -1.94 5.32 -26.65 -0.14 -2.08 16 11 C 0.07 1.09 4.64 -3.84 -0.02 1.08 16 12 N -0.47 -7.58 4.66 -173.27 -0.81 -8.39 16 13 C 0.35 5.13 6.40 -155.28 -0.99 4.14 16 14 C -0.20 -2.50 9.10 -39.65 -0.36 -2.86 16 15 C 0.01 0.10 9.65 -39.29 -0.38 -0.28 16 16 C -0.24 -2.71 5.89 -104.82 -0.62 -3.32 16 17 C 0.58 6.52 7.77 -12.47 -0.10 6.42 16 18 O -0.54 -7.79 15.98 5.28 0.08 -7.71 16 19 N -0.70 -5.66 5.52 -54.85 -0.30 -5.97 16 20 C 0.08 0.59 6.43 -67.94 -0.44 0.16 16 21 C -0.19 -1.05 10.46 -26.74 -0.28 -1.33 16 22 C -0.19 -0.97 10.45 -26.74 -0.28 -1.25 16 23 C 0.17 1.82 10.71 -17.12 -0.18 1.64 16 24 N -0.53 -7.20 8.64 -12.14 -0.10 -7.31 16 25 C 0.06 0.99 5.24 -3.84 -0.02 0.97 16 26 C -0.12 -2.42 4.84 -26.65 -0.13 -2.55 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.02 0.57 7.19 -51.93 -0.37 0.20 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.08 1.23 7.70 -51.93 -0.40 0.83 16 33 H 0.14 1.61 7.12 -52.49 -0.37 1.23 16 34 H 0.15 1.54 7.73 -52.49 -0.41 1.14 16 35 H 0.40 2.25 6.88 -40.82 -0.28 1.97 16 36 H 0.14 1.19 7.40 -51.92 -0.38 0.81 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.15 1.07 6.41 -52.49 -0.34 0.74 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.07 6.64 -51.93 -0.34 0.72 16 44 H 0.06 1.21 3.38 -51.93 -0.18 1.03 16 45 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -31.98 356.87 -10.11 -42.09 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.48 Total: 2.64 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -4.51 Total: -11.52 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -0.44 Total: -47.92 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.08 Total: -7.71 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.14 Total: 17.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.98 -10.11 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611617605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.437 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds