Wall clock time and date at job start Tue Mar 31 2020 11:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00428 * 2 1 4 4 H 1.48497 * 109.46699 * 269.99911 * 3 2 1 5 5 H 1.48499 * 109.47003 * 29.99469 * 3 2 1 6 6 H 1.48491 * 109.47416 * 149.99956 * 3 2 1 7 7 C 1.37879 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00050 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00379 * 179.97438 * 7 2 1 10 10 C 1.53123 * 109.52570 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.27788 * 177.56259 * 10 9 7 12 12 N 1.46842 * 109.52190 * 300.81892 * 11 10 9 13 13 C 1.38459 * 110.99638 * 185.84170 * 12 11 10 14 14 C 1.39406 * 119.53440 * 180.02562 * 13 12 11 15 15 C 1.36858 * 119.37446 * 179.97438 * 14 13 12 16 16 C 1.40349 * 118.49606 * 0.02562 * 15 14 13 17 17 C 1.47539 * 120.47829 * 179.97438 * 16 15 14 18 18 O 1.21597 * 119.99763 * 359.97438 * 17 16 15 19 19 N 1.34770 * 120.00073 * 180.02562 * 17 16 15 20 20 C 1.46504 * 120.00117 * 180.02562 * 19 17 16 21 21 C 1.52993 * 117.49968 * 223.61938 * 20 19 17 22 22 C 1.52993 * 117.50188 * 154.99446 * 20 19 17 23 23 C 1.39560 * 119.04787 * 359.97438 * 16 15 14 24 24 N 1.31683 * 120.52153 * 359.72129 * 23 16 15 25 25 C 1.46848 * 111.20069 * 61.74451 * 12 11 10 26 26 C 1.53032 * 109.52348 * 298.25721 * 25 12 11 27 27 H 0.97004 * 119.99529 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.57244 * 59.84439 * 9 7 2 29 29 H 1.09000 * 109.50367 * 57.61804 * 10 9 7 30 30 H 1.09006 * 109.50264 * 297.50143 * 10 9 7 31 31 H 1.09002 * 109.46126 * 60.83950 * 11 10 9 32 32 H 1.09000 * 109.45809 * 180.80452 * 11 10 9 33 33 H 1.07998 * 120.31246 * 359.97438 * 14 13 12 34 34 H 1.07998 * 120.74944 * 179.97438 * 15 14 13 35 35 H 0.97005 * 120.00439 * 359.97438 * 19 17 16 36 36 H 1.09008 * 115.54852 * 9.32588 * 20 19 17 37 37 H 1.09003 * 117.49943 * 359.97438 * 21 20 19 38 38 H 1.09000 * 117.50181 * 145.01469 * 21 20 19 39 39 H 1.09004 * 117.50280 * 214.97533 * 22 20 19 40 40 H 1.08997 * 117.50082 * 359.97438 * 22 20 19 41 41 H 1.08000 * 119.74359 * 179.97438 * 23 16 15 42 42 H 1.09003 * 109.46014 * 58.27448 * 25 12 11 43 43 H 1.08995 * 109.46374 * 178.23478 * 25 12 11 44 44 H 1.08996 * 109.50421 * 179.11872 * 26 25 12 45 45 H 1.08997 * 109.50237 * 299.24201 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0232 -2.6374 0.0001 11 6 5.5523 -2.6313 -0.0620 12 7 5.9912 -1.9376 -1.2794 13 6 7.3643 -2.0271 -1.4338 14 6 7.9726 -1.4272 -2.5354 15 6 9.3300 -1.5173 -2.6844 16 6 10.0652 -2.2167 -1.7148 17 6 11.5305 -2.3414 -1.8325 18 8 12.1099 -1.8366 -2.7750 19 7 12.2269 -3.0156 -0.8961 20 6 13.6821 -3.1389 -1.0127 21 6 14.3002 -4.5086 -0.7257 22 6 14.4774 -3.3646 0.2746 23 6 9.3901 -2.7926 -0.6375 24 7 8.0829 -2.6772 -0.5286 25 6 5.5519 -0.5363 -1.2799 26 6 4.0228 -0.4798 -1.2542 27 1 -0.4850 0.8401 -0.0004 28 1 3.8771 -0.6777 0.8875 29 1 3.6258 -3.1645 -0.8673 30 1 3.6979 -3.1387 0.9117 31 1 5.9492 -2.1162 0.8128 32 1 5.9192 -3.6576 -0.0764 33 1 7.3782 -0.8963 -3.2642 34 1 9.8242 -1.0613 -3.5295 35 1 11.7647 -3.4186 -0.1445 36 1 14.1447 -2.5304 -1.7900 37 1 13.6243 -5.3180 -0.4497 38 1 15.1696 -4.8018 -1.3143 39 1 15.4634 -2.9052 0.3442 40 1 13.9181 -3.4210 1.2084 41 1 9.9447 -3.3336 0.1149 42 1 5.9489 -0.0310 -0.3994 43 1 5.9187 -0.0410 -2.1788 44 1 3.6974 0.5603 -1.2387 45 1 3.6255 -0.9730 -2.1413 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611617605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:12 Heat of formation + Delta-G solvation = 20.181127 kcal Electronic energy + Delta-G solvation = -25516.947268 eV Core-core repulsion = 21920.506897 eV Total energy + Delta-G solvation = -3596.440371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.05864 -40.79598 -39.33392 -37.99953 -35.97141 -34.24117 -33.82116 -33.57710 -31.84565 -30.98688 -28.01109 -25.37228 -25.24493 -23.56900 -23.47784 -23.24984 -22.53142 -21.72664 -20.61201 -19.24126 -18.84809 -18.41628 -17.98040 -17.04209 -16.65102 -16.27548 -16.10725 -15.86271 -15.46423 -15.38963 -15.25788 -15.02576 -14.84187 -14.34419 -14.26528 -14.01438 -13.77234 -13.64830 -13.55775 -13.19697 -12.81454 -12.52412 -12.35565 -12.23576 -12.12766 -11.74546 -11.56680 -11.52767 -11.33009 -11.09083 -11.05120 -10.99755 -10.77276 -10.66396 -10.47450 -9.82538 -9.15533 -8.28197 -6.31954 -0.43197 0.24449 1.30230 1.36591 1.46365 1.66914 1.97292 2.33147 2.40715 2.78632 3.03110 3.06703 3.27370 3.63517 3.76517 3.83069 3.84841 3.98663 4.03234 4.06835 4.08122 4.09642 4.18506 4.33723 4.47709 4.56522 4.65843 4.69474 4.75726 4.78837 4.79426 4.88741 4.92848 5.01018 5.05067 5.08801 5.17312 5.22709 5.36097 5.46409 5.47703 5.65864 5.68063 5.76556 6.12402 6.33198 6.40435 6.75052 6.83139 7.09670 7.33164 8.88765 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.031679 B = 0.002473 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.664522 B =11319.422839 C =11625.547095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.008 3.992 3 Si 0.948 3.052 4 H -0.260 1.260 5 H -0.302 1.302 6 H -0.246 1.246 7 C -0.515 4.515 8 H 0.032 0.968 9 C 0.010 3.990 10 C -0.096 4.096 11 C 0.081 3.919 12 N -0.479 5.479 13 C 0.333 3.667 14 C -0.197 4.197 15 C 0.006 3.994 16 C -0.236 4.236 17 C 0.576 3.424 18 O -0.578 6.578 19 N -0.686 5.686 20 C 0.052 3.948 21 C -0.184 4.184 22 C -0.173 4.173 23 C 0.174 3.826 24 N -0.541 5.541 25 C 0.067 3.933 26 C -0.116 4.116 27 H 0.265 0.735 28 H 0.022 0.978 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.414 0.586 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.190 0.810 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.049 0.951 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.746 -5.802 -0.702 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.186 1.186 5 H -0.230 1.230 6 H -0.169 1.169 7 C -0.553 4.553 8 H 0.050 0.950 9 C -0.009 4.009 10 C -0.134 4.134 11 C -0.045 4.045 12 N -0.194 5.194 13 C 0.102 3.898 14 C -0.220 4.220 15 C -0.020 4.020 16 C -0.243 4.243 17 C 0.365 3.635 18 O -0.458 6.458 19 N -0.337 5.337 20 C -0.054 4.054 21 C -0.223 4.223 22 C -0.211 4.211 23 C 0.014 3.986 24 N -0.255 5.255 25 C -0.058 4.058 26 C -0.154 4.154 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.175 0.825 34 H 0.171 0.829 35 H 0.252 0.748 36 H 0.138 0.862 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.206 0.794 42 H 0.064 0.936 43 H 0.122 0.878 44 H 0.067 0.933 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 29.237 -5.937 -1.031 29.851 hybrid contribution -0.172 1.129 0.132 1.149 sum 29.066 -4.808 -0.900 29.474 Atomic orbital electron populations 1.70062 1.08290 1.27946 1.52891 1.25934 0.95445 1.03133 0.94340 0.85851 0.79132 0.78568 0.78969 1.18620 1.22969 1.16942 1.21346 0.91437 0.92871 1.49672 0.94966 1.19189 0.93644 0.94339 0.93723 1.21487 0.93385 0.97204 1.01315 1.21944 0.94806 0.99273 0.88520 1.58720 1.06745 1.15574 1.38366 1.20304 0.88827 0.90400 0.90319 1.21454 0.95393 1.05421 0.99705 1.21379 0.92739 0.91234 0.96681 1.20706 0.93685 1.08789 1.01089 1.18003 0.86501 0.77349 0.81690 1.90755 1.71617 1.49643 1.33824 1.45160 1.06942 1.54887 1.26663 1.21671 0.79811 1.01858 1.02059 1.23514 1.03567 0.92058 1.03138 1.23482 1.02116 1.01814 0.93705 1.23172 0.88975 0.91984 0.94511 1.67770 1.08472 1.21399 1.27893 1.22332 0.96220 0.84711 1.02528 1.21935 0.93130 0.99637 1.00704 0.92655 0.96016 0.92834 0.91806 0.93467 0.89308 0.82538 0.82916 0.74760 0.86166 0.87612 0.87245 0.86874 0.87158 0.79350 0.93594 0.87786 0.93292 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.25 13.96 21.45 0.30 -58.96 16 2 C 0.01 0.46 5.45 84.65 0.46 0.93 16 3 Si 0.95 43.69 24.37 68.60 1.67 45.36 16 4 H -0.26 -11.22 6.89 99.48 0.69 -10.53 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.25 -10.37 6.53 99.48 0.65 -9.72 16 7 C -0.52 -28.89 9.14 25.60 0.23 -28.65 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 9 C 0.01 0.44 1.75 -11.46 -0.02 0.42 16 10 C -0.10 -3.67 5.32 30.65 0.16 -3.51 16 11 C 0.08 2.56 4.64 86.33 0.40 2.96 16 12 N -0.48 -14.48 4.66 -702.11 -3.27 -17.76 16 13 C 0.33 8.84 6.40 133.25 0.85 9.69 16 14 C -0.20 -4.42 9.10 22.23 0.20 -4.22 16 15 C 0.01 0.12 9.65 22.46 0.22 0.34 16 16 C -0.24 -4.71 5.89 -19.99 -0.12 -4.83 16 17 C 0.58 11.87 7.77 86.70 0.67 12.55 16 18 O -0.58 -16.14 15.98 -4.02 -0.06 -16.20 16 19 N -0.69 -9.32 5.52 -445.70 -2.46 -11.78 16 20 C 0.05 0.65 6.43 44.99 0.29 0.94 16 21 C -0.18 -1.50 10.46 30.59 0.32 -1.18 16 22 C -0.17 -1.25 10.45 30.59 0.32 -0.93 16 23 C 0.17 3.17 10.71 85.03 0.91 4.08 16 24 N -0.54 -13.27 8.64 -192.31 -1.66 -14.93 16 25 C 0.07 2.05 5.24 86.32 0.45 2.50 16 26 C -0.12 -4.55 4.84 30.65 0.15 -4.40 16 27 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.02 0.99 7.19 -2.38 -0.02 0.97 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.05 1.49 8.10 -2.39 -0.02 1.47 16 32 H 0.09 2.62 7.70 -2.39 -0.02 2.60 16 33 H 0.16 3.03 7.12 -2.91 -0.02 3.01 16 34 H 0.15 2.96 7.73 -2.91 -0.02 2.94 16 35 H 0.41 3.19 6.88 -92.70 -0.64 2.55 16 36 H 0.12 1.99 7.40 -2.38 -0.02 1.98 16 37 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.19 1.85 6.41 -2.91 -0.02 1.83 16 42 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.10 2.59 6.64 -2.39 -0.02 2.58 16 44 H 0.05 1.98 3.38 -2.39 -0.01 1.97 16 45 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -71.81 356.87 0.31 -71.50 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.30 Total: 16.08 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 5.51 Total: -13.30 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -7.10 Total: -103.43 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.06 Total: -16.20 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.67 Total: 45.36 kcal Total: -71.81 0.31 -71.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611617605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.678 kcal (2) G-P(sol) polarization free energy of solvation -71.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds