Wall clock time and date at job start Tue Mar 31 2020 10:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00215 * 2 1 4 4 H 1.48503 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47422 * 300.00355 * 3 2 1 6 6 H 1.48503 * 109.47092 * 60.00695 * 3 2 1 7 7 C 1.37877 * 119.99422 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99482 * 184.72280 * 7 2 1 9 9 C 1.50699 * 120.00526 * 4.73156 * 7 2 1 10 10 C 1.53000 * 115.54963 * 84.74280 * 9 7 2 11 11 S 1.81398 * 109.47346 * 61.94902 * 10 9 7 12 12 O 1.42102 * 110.54092 * 58.17967 * 11 10 9 13 13 O 1.42103 * 110.54272 * 281.43403 * 11 10 9 14 14 N 1.65597 * 104.45337 * 169.80865 * 11 10 9 15 15 C 1.47876 * 123.49150 * 263.15617 * 14 11 10 16 16 C 1.54133 * 116.37518 * 124.82908 * 15 14 11 17 17 C 1.56134 * 105.95156 * 301.12859 * 16 15 14 18 18 C 1.53873 * 107.06154 * 128.53827 * 17 16 15 19 19 C 1.54485 * 117.15622 * 299.48756 * 18 17 16 20 20 C 1.57809 * 104.67886 * 302.24099 * 19 18 17 21 21 C 1.55037 * 104.27552 * 131.45454 * 20 19 18 22 22 C 1.50038 * 123.38423 * 83.27713 * 14 11 10 23 23 C 1.53000 * 117.49692 * 230.41601 * 9 7 2 24 24 C 1.52997 * 117.49661 * 299.07559 * 9 7 2 25 25 H 0.97004 * 119.99948 * 4.99491 * 1 2 3 26 26 H 1.08999 * 109.46920 * 301.94394 * 10 9 7 27 27 H 1.09004 * 109.46598 * 181.94809 * 10 9 7 28 28 H 1.09002 * 107.95232 * 3.18490 * 15 14 11 29 29 H 1.09006 * 108.19753 * 246.66320 * 15 14 11 30 30 H 1.08997 * 110.17322 * 181.99023 * 16 15 14 31 31 H 1.08998 * 110.17140 * 60.26936 * 16 15 14 32 32 H 1.08999 * 109.93709 * 247.92704 * 17 16 15 33 33 H 1.09001 * 109.94119 * 9.15162 * 17 16 15 34 34 H 1.09000 * 107.91331 * 61.42875 * 18 17 16 35 35 H 1.08997 * 107.91209 * 177.58790 * 18 17 16 36 36 H 1.09005 * 110.38849 * 61.02528 * 19 18 17 37 37 H 1.08997 * 110.39000 * 183.27718 * 19 18 17 38 38 H 1.09002 * 110.46443 * 250.13544 * 20 19 18 39 39 H 1.08994 * 110.46426 * 12.76532 * 20 19 18 40 40 H 1.09002 * 108.22602 * 65.35771 * 21 20 19 41 41 H 1.08998 * 108.22274 * 182.29071 * 21 20 19 42 42 H 1.09004 * 109.88849 * 192.29400 * 22 14 11 43 43 H 1.09006 * 109.94989 * 71.22694 * 22 14 11 44 44 H 1.09003 * 117.49529 * 214.99661 * 23 9 7 45 45 H 1.08998 * 117.50269 * 0.02562 * 23 9 7 46 46 H 1.09003 * 117.49998 * 359.97438 * 24 9 7 47 47 H 1.09002 * 117.50260 * 144.97249 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0817 -1.1958 0.0765 9 6 1.2547 -2.4969 -0.1088 10 6 0.9153 -2.9468 -1.5312 11 16 2.4486 -3.2140 -2.4630 12 8 3.2617 -4.1843 -1.8175 13 8 2.9915 -1.9742 -2.8959 14 7 1.9591 -3.9556 -3.8604 15 6 1.9911 -5.4203 -4.0612 16 6 0.6618 -6.0846 -4.4702 17 6 -0.3520 -5.7536 -3.3299 18 6 -1.6065 -5.1641 -3.9981 19 6 -1.4257 -3.8664 -4.8164 20 6 -0.8188 -2.8296 -3.7931 21 6 0.3876 -2.2114 -4.5455 22 6 1.4400 -3.2085 -5.0535 23 6 1.5763 -3.5844 0.9184 24 6 0.2484 -2.8267 0.9955 25 1 -0.4850 0.8369 -0.0731 26 1 0.3204 -2.1774 -2.0233 27 1 0.3470 -3.8761 -1.4924 28 1 2.3266 -5.8797 -3.1314 29 1 2.7308 -5.6424 -4.8305 30 1 0.7914 -7.1634 -4.5562 31 1 0.3110 -5.6721 -5.4162 32 1 -0.6120 -6.6630 -2.7882 33 1 0.0824 -5.0241 -2.6464 34 1 -2.0214 -5.9234 -4.6611 35 1 -2.3413 -4.9678 -3.2173 36 1 -0.7354 -4.0320 -5.6436 37 1 -2.3878 -3.5161 -5.1903 38 1 -1.5515 -2.0600 -3.5504 39 1 -0.4841 -3.3380 -2.8889 40 1 0.0064 -1.6530 -5.4005 41 1 0.8832 -1.5087 -3.8757 42 1 0.9826 -3.9045 -5.7567 43 1 2.2549 -2.6721 -5.5398 44 1 1.5459 -4.6204 0.5807 45 1 2.3297 -3.3574 1.6726 46 1 0.1289 -2.1016 1.8005 47 1 -0.6556 -3.3638 0.7086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832390170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:08 Heat of formation + Delta-G solvation = -39.415177 kcal Electronic energy + Delta-G solvation = -27664.404472 eV Core-core repulsion = 24168.531012 eV Total energy + Delta-G solvation = -3495.873461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.39009 -36.75219 -36.35480 -35.07885 -34.22616 -33.61774 -32.02917 -28.75433 -28.25939 -27.28978 -25.66625 -24.42718 -22.12403 -21.15585 -20.94673 -19.70596 -19.46877 -17.92566 -16.96250 -16.54274 -15.90980 -15.40746 -15.21825 -14.82737 -14.59372 -14.21650 -13.91044 -13.90614 -13.71784 -13.37188 -13.04076 -12.68162 -12.16209 -12.00521 -11.71827 -11.68996 -11.54765 -11.49975 -11.24354 -11.16757 -11.05504 -11.02100 -10.92557 -10.71192 -10.56966 -10.44608 -10.42226 -10.29911 -10.21263 -9.96836 -9.81496 -9.57166 -9.05145 -8.72386 -8.49151 -8.00792 -6.13848 -4.25284 1.05152 3.29654 3.35080 3.37778 3.46416 4.39094 4.63603 4.64754 4.75784 4.79008 5.01642 5.08045 5.11219 5.13623 5.16236 5.24269 5.26419 5.34371 5.42614 5.49438 5.64329 5.74888 5.79824 5.83948 5.86600 5.89307 5.95807 6.00566 6.08216 6.16047 6.23469 6.26089 6.34594 6.40088 6.42973 6.44625 6.51029 6.62867 6.66169 6.75732 6.83479 7.03485 7.25828 7.48088 7.79559 8.21199 8.80875 9.46899 10.93442 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.006099 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.071978 B = 4589.784263 C = 4649.099929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.084 3.916 3 Si 0.888 3.112 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.067 0.933 9 C 0.041 3.959 10 C -0.571 4.571 11 S 2.619 3.381 12 O -0.970 6.970 13 O -0.948 6.948 14 N -1.015 6.015 15 C 0.116 3.884 16 C -0.134 4.134 17 C -0.129 4.129 18 C -0.121 4.121 19 C -0.122 4.122 20 C -0.146 4.146 21 C -0.171 4.171 22 C 0.133 3.867 23 C -0.208 4.208 24 C -0.134 4.134 25 H 0.262 0.738 26 H 0.144 0.856 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.077 -10.377 -10.847 15.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.122 4.122 3 Si 0.714 3.286 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.039 3.961 10 C -0.703 4.703 11 S 2.717 3.283 12 O -0.961 6.961 13 O -0.939 6.939 14 N -0.852 5.852 15 C -0.010 4.010 16 C -0.173 4.173 17 C -0.166 4.166 18 C -0.158 4.158 19 C -0.159 4.159 20 C -0.183 4.183 21 C -0.209 4.209 22 C 0.009 3.991 23 C -0.245 4.245 24 C -0.173 4.173 25 H 0.071 0.929 26 H 0.162 0.838 27 H 0.121 0.879 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.107 0.893 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.290 -10.018 -10.577 14.935 hybrid contribution -0.539 0.910 -0.036 1.058 sum -3.829 -9.108 -10.614 14.501 Atomic orbital electron populations 1.70026 1.05876 1.27040 1.47640 1.24924 0.94815 0.99116 0.93302 0.86583 0.80970 0.83370 0.77642 1.19139 1.20476 1.20924 1.20581 0.93059 0.88632 1.53184 0.91530 1.18285 1.00574 0.93850 0.83408 1.30691 1.19498 1.08125 1.11942 1.04900 0.77492 0.73338 0.72568 1.93474 1.65690 1.61731 1.75216 1.93516 1.76423 1.44164 1.79750 1.59453 1.81988 1.13939 1.29779 1.21432 0.96851 0.80182 1.02538 1.22810 0.95455 0.99983 0.99075 1.22540 0.95782 1.00577 0.97686 1.21945 0.97727 0.96990 0.99172 1.22884 1.00440 0.94927 0.97695 1.23562 0.96750 0.98915 0.99059 1.22690 0.96908 0.99251 1.02074 1.22066 0.95471 0.93925 0.87677 1.23162 1.00700 0.95616 1.05047 1.22512 0.90636 1.01186 1.02969 0.92855 0.83824 0.87865 0.90178 0.92538 0.90527 0.90900 0.91504 0.91299 0.93366 0.92852 0.91182 0.91891 0.90901 0.88764 0.90751 0.90768 0.89841 0.90994 0.91028 0.89653 0.89265 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.67 12.66 55.43 0.70 -22.97 16 2 C 0.08 2.28 5.43 -17.82 -0.10 2.18 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.22 8.17 -34.44 -0.28 -14.50 16 8 H 0.07 1.89 7.82 -52.48 -0.41 1.48 16 9 C 0.04 1.00 1.45 -155.66 -0.23 0.77 16 10 C -0.57 -11.91 3.54 37.16 0.13 -11.78 16 11 S 2.62 55.02 4.44 -107.50 -0.48 54.54 16 12 O -0.97 -22.16 16.72 -57.54 -0.96 -23.12 16 13 O -0.95 -23.04 16.28 -57.54 -0.94 -23.98 16 14 N -1.02 -15.90 2.36 -109.59 -0.26 -16.15 16 15 C 0.12 1.49 5.23 -2.69 -0.01 1.47 16 16 C -0.13 -1.34 5.87 -24.46 -0.14 -1.48 16 17 C -0.13 -1.46 5.81 -24.60 -0.14 -1.60 16 18 C -0.12 -1.29 4.75 -25.50 -0.12 -1.41 16 19 C -0.12 -1.32 5.90 -23.32 -0.14 -1.46 16 20 C -0.15 -2.04 4.70 -23.02 -0.11 -2.14 16 21 C -0.17 -2.46 4.46 -25.33 -0.11 -2.57 16 22 C 0.13 1.77 5.70 -1.74 -0.01 1.76 16 23 C -0.21 -4.61 9.95 -26.69 -0.27 -4.87 16 24 C -0.13 -3.06 9.17 -26.69 -0.24 -3.30 16 25 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 26 H 0.14 3.07 4.86 -51.92 -0.25 2.81 16 27 H 0.10 1.85 4.99 -51.92 -0.26 1.60 16 28 H 0.08 1.11 7.01 -51.93 -0.36 0.75 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.65 5.11 -51.93 -0.27 0.39 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.93 2.90 -51.93 -0.15 0.78 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.68 4.47 -51.93 -0.23 0.45 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.44 1.96 -51.93 -0.10 1.33 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.33 5.67 -51.93 -0.29 1.03 16 42 H 0.08 0.85 4.55 -51.93 -0.24 0.62 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 46 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 47 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 346.97 15.07 5.23 5.23 Total: -1.00 -31.37 346.97 -10.70 -42.07 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -7.20 Total: 6.72 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: -1.77 Total: -38.94 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.44 Total: -39.12 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -1.90 Total: -47.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 55.02 SS G_CDS: -0.48 Total: 54.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.37 -10.70 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832390170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.650 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds