Wall clock time and date at job start Tue Mar 31 2020 10:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00215 * 2 1 4 4 H 1.48503 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47422 * 300.00355 * 3 2 1 6 6 H 1.48503 * 109.47092 * 60.00695 * 3 2 1 7 7 C 1.37877 * 119.99422 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99482 * 184.72280 * 7 2 1 9 9 C 1.50699 * 120.00526 * 4.73156 * 7 2 1 10 10 C 1.53000 * 115.54963 * 84.74280 * 9 7 2 11 11 S 1.81398 * 109.47346 * 61.94902 * 10 9 7 12 12 O 1.42102 * 110.54092 * 58.17967 * 11 10 9 13 13 O 1.42103 * 110.54272 * 281.43403 * 11 10 9 14 14 N 1.65597 * 104.45337 * 169.80865 * 11 10 9 15 15 C 1.47876 * 123.49150 * 263.15617 * 14 11 10 16 16 C 1.54133 * 116.37518 * 124.82908 * 15 14 11 17 17 C 1.56134 * 105.95156 * 301.12859 * 16 15 14 18 18 C 1.53873 * 107.06154 * 128.53827 * 17 16 15 19 19 C 1.54485 * 117.15622 * 299.48756 * 18 17 16 20 20 C 1.57809 * 104.67886 * 302.24099 * 19 18 17 21 21 C 1.55037 * 104.27552 * 131.45454 * 20 19 18 22 22 C 1.50038 * 123.38423 * 83.27713 * 14 11 10 23 23 C 1.53000 * 117.49692 * 230.41601 * 9 7 2 24 24 C 1.52997 * 117.49661 * 299.07559 * 9 7 2 25 25 H 0.97004 * 119.99948 * 4.99491 * 1 2 3 26 26 H 1.08999 * 109.46920 * 301.94394 * 10 9 7 27 27 H 1.09004 * 109.46598 * 181.94809 * 10 9 7 28 28 H 1.09002 * 107.95232 * 3.18490 * 15 14 11 29 29 H 1.09006 * 108.19753 * 246.66320 * 15 14 11 30 30 H 1.08997 * 110.17322 * 181.99023 * 16 15 14 31 31 H 1.08998 * 110.17140 * 60.26936 * 16 15 14 32 32 H 1.08999 * 109.93709 * 247.92704 * 17 16 15 33 33 H 1.09001 * 109.94119 * 9.15162 * 17 16 15 34 34 H 1.09000 * 107.91331 * 61.42875 * 18 17 16 35 35 H 1.08997 * 107.91209 * 177.58790 * 18 17 16 36 36 H 1.09005 * 110.38849 * 61.02528 * 19 18 17 37 37 H 1.08997 * 110.39000 * 183.27718 * 19 18 17 38 38 H 1.09002 * 110.46443 * 250.13544 * 20 19 18 39 39 H 1.08994 * 110.46426 * 12.76532 * 20 19 18 40 40 H 1.09002 * 108.22602 * 65.35771 * 21 20 19 41 41 H 1.08998 * 108.22274 * 182.29071 * 21 20 19 42 42 H 1.09004 * 109.88849 * 192.29400 * 22 14 11 43 43 H 1.09006 * 109.94989 * 71.22694 * 22 14 11 44 44 H 1.09003 * 117.49529 * 214.99661 * 23 9 7 45 45 H 1.08998 * 117.50269 * 0.02562 * 23 9 7 46 46 H 1.09003 * 117.49998 * 359.97438 * 24 9 7 47 47 H 1.09002 * 117.50260 * 144.97249 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0817 -1.1958 0.0765 9 6 1.2547 -2.4969 -0.1088 10 6 0.9153 -2.9468 -1.5312 11 16 2.4486 -3.2140 -2.4630 12 8 3.2617 -4.1843 -1.8175 13 8 2.9915 -1.9742 -2.8959 14 7 1.9591 -3.9556 -3.8604 15 6 1.9911 -5.4203 -4.0612 16 6 0.6618 -6.0846 -4.4702 17 6 -0.3520 -5.7536 -3.3299 18 6 -1.6065 -5.1641 -3.9981 19 6 -1.4257 -3.8664 -4.8164 20 6 -0.8188 -2.8296 -3.7931 21 6 0.3876 -2.2114 -4.5455 22 6 1.4400 -3.2085 -5.0535 23 6 1.5763 -3.5844 0.9184 24 6 0.2484 -2.8267 0.9955 25 1 -0.4850 0.8369 -0.0731 26 1 0.3204 -2.1774 -2.0233 27 1 0.3470 -3.8761 -1.4924 28 1 2.3266 -5.8797 -3.1314 29 1 2.7308 -5.6424 -4.8305 30 1 0.7914 -7.1634 -4.5562 31 1 0.3110 -5.6721 -5.4162 32 1 -0.6120 -6.6630 -2.7882 33 1 0.0824 -5.0241 -2.6464 34 1 -2.0214 -5.9234 -4.6611 35 1 -2.3413 -4.9678 -3.2173 36 1 -0.7354 -4.0320 -5.6436 37 1 -2.3878 -3.5161 -5.1903 38 1 -1.5515 -2.0600 -3.5504 39 1 -0.4841 -3.3380 -2.8889 40 1 0.0064 -1.6530 -5.4005 41 1 0.8832 -1.5087 -3.8757 42 1 0.9826 -3.9045 -5.7567 43 1 2.2549 -2.6721 -5.5398 44 1 1.5459 -4.6204 0.5807 45 1 2.3297 -3.3574 1.6726 46 1 0.1289 -2.1016 1.8005 47 1 -0.6556 -3.3638 0.7086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832390170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:07 Heat of formation + Delta-G solvation = -58.685695 kcal Electronic energy + Delta-G solvation = -27665.240105 eV Core-core repulsion = 24168.531012 eV Total energy + Delta-G solvation = -3496.709093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.43106 -38.56584 -38.06373 -36.81598 -35.27928 -34.61845 -34.10494 -30.24769 -29.40710 -28.27051 -27.65019 -25.59151 -23.07225 -22.97252 -22.08081 -21.36818 -20.57276 -19.45413 -18.45015 -18.29683 -17.25134 -16.89150 -16.69565 -16.48215 -15.98107 -15.66508 -15.28303 -15.04779 -14.91123 -14.75690 -14.27102 -13.96388 -13.86515 -13.43405 -13.09170 -13.04073 -13.03405 -12.95996 -12.90717 -12.83048 -12.56476 -12.42367 -12.35671 -12.23855 -12.08744 -11.95285 -11.60351 -11.53388 -11.41770 -11.23832 -11.08278 -11.00790 -10.76981 -10.47950 -10.09951 -9.65952 -8.22631 -6.37838 -0.54745 1.32189 1.36165 1.47577 1.92916 2.36787 2.98727 3.04551 3.28002 3.41010 3.73976 3.82058 3.93872 3.97831 4.12256 4.16935 4.21584 4.25774 4.33525 4.42121 4.50083 4.52372 4.58425 4.59693 4.78936 4.84942 4.87048 4.89635 4.96013 4.97202 5.04347 5.10339 5.13669 5.19206 5.23814 5.30437 5.36598 5.45441 5.49961 5.50914 5.56743 5.61507 5.64966 5.68077 5.75088 6.20147 6.68259 7.34934 8.84218 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015824 B = 0.006099 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.071978 B = 4589.784263 C = 4649.099929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.048 3.952 3 Si 0.927 3.073 4 H -0.277 1.277 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.043 0.957 9 C 0.011 3.989 10 C -0.560 4.560 11 S 2.628 3.372 12 O -0.997 6.997 13 O -0.993 6.993 14 N -1.010 6.010 15 C 0.106 3.894 16 C -0.123 4.123 17 C -0.137 4.137 18 C -0.120 4.120 19 C -0.112 4.112 20 C -0.152 4.152 21 C -0.172 4.172 22 C 0.132 3.868 23 C -0.198 4.198 24 C -0.128 4.128 25 H 0.265 0.735 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.029 0.971 42 H 0.126 0.874 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 -12.377 -13.091 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.156 4.156 3 Si 0.752 3.248 4 H -0.201 1.201 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.061 0.939 9 C 0.009 3.991 10 C -0.692 4.692 11 S 2.726 3.274 12 O -0.987 6.987 13 O -0.983 6.983 14 N -0.849 5.849 15 C -0.019 4.019 16 C -0.161 4.161 17 C -0.174 4.174 18 C -0.157 4.157 19 C -0.149 4.149 20 C -0.189 4.189 21 C -0.210 4.210 22 C 0.008 3.992 23 C -0.235 4.235 24 C -0.167 4.167 25 H 0.075 0.925 26 H 0.154 0.846 27 H 0.149 0.851 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.048 0.952 42 H 0.144 0.856 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.586 -12.016 -12.805 18.148 hybrid contribution -0.138 1.487 0.633 1.622 sum -4.723 -10.529 -12.171 16.772 Atomic orbital electron populations 1.70056 1.06282 1.27681 1.47958 1.25432 0.95619 1.01193 0.93306 0.85980 0.79488 0.81011 0.78314 1.20132 1.19864 1.19422 1.20719 0.92293 0.90806 1.53679 0.93914 1.18412 1.01547 0.93567 0.85596 1.30557 1.19775 1.09130 1.09709 1.04221 0.77381 0.72441 0.73343 1.93425 1.66797 1.61986 1.76496 1.93453 1.77676 1.46486 1.80685 1.58972 1.81832 1.15633 1.28443 1.21777 0.99513 0.77948 1.02662 1.22840 0.92927 1.01338 0.99019 1.22595 0.96404 1.00397 0.98001 1.21925 0.97194 0.97373 0.99252 1.22875 1.01175 0.93758 0.97120 1.23516 0.96365 0.99407 0.99584 1.22743 0.97140 0.99102 1.02051 1.22337 0.95270 0.94478 0.87083 1.23206 1.00007 0.96383 1.03946 1.22426 0.91633 1.00935 1.01746 0.92541 0.84637 0.85103 0.91656 0.90446 0.87868 0.89105 0.90452 0.93912 0.91076 0.93943 0.89429 0.90719 0.92396 0.90219 0.88490 0.95189 0.85612 0.91108 0.88599 0.90277 0.91440 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.01 12.66 21.45 0.27 -48.73 16 2 C 0.05 2.69 5.43 84.65 0.46 3.15 16 3 Si 0.93 45.20 29.54 68.60 2.03 47.22 16 4 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -30.67 8.17 25.60 0.21 -30.47 16 8 H 0.04 2.56 7.82 -2.91 -0.02 2.54 16 9 C 0.01 0.54 1.45 -52.93 -0.08 0.46 16 10 C -0.56 -23.69 3.54 71.98 0.25 -23.44 16 11 S 2.63 112.24 4.44 -56.49 -0.25 111.99 16 12 O -1.00 -46.16 16.72 -127.65 -2.13 -48.29 16 13 O -0.99 -50.21 16.28 -127.65 -2.08 -52.29 16 14 N -1.01 -30.25 2.36 -500.62 -1.18 -31.44 16 15 C 0.11 2.41 5.23 86.50 0.45 2.86 16 16 C -0.12 -1.88 5.87 32.07 0.19 -1.69 16 17 C -0.14 -2.65 5.81 31.98 0.19 -2.46 16 18 C -0.12 -2.12 4.75 31.39 0.15 -1.97 16 19 C -0.11 -2.03 5.90 32.81 0.19 -1.84 16 20 C -0.15 -4.06 4.70 33.00 0.16 -3.90 16 21 C -0.17 -4.79 4.46 31.50 0.14 -4.65 16 22 C 0.13 3.20 5.70 85.90 0.49 3.69 16 23 C -0.20 -8.82 9.95 30.62 0.30 -8.51 16 24 C -0.13 -5.90 9.17 30.62 0.28 -5.62 16 25 H 0.27 13.93 8.32 -92.71 -0.77 13.16 16 26 H 0.14 5.98 4.86 -2.39 -0.01 5.96 16 27 H 0.13 4.67 4.99 -2.39 -0.01 4.65 16 28 H 0.06 1.69 7.01 -2.39 -0.02 1.67 16 29 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.08 5.11 -2.39 -0.01 1.07 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.04 1.06 2.90 -2.39 -0.01 1.06 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 35 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 1.25 4.47 -2.38 -0.01 1.24 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 2.37 1.96 -2.39 0.00 2.37 16 40 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.03 1.10 5.67 -2.39 -0.01 1.09 16 42 H 0.13 1.98 4.55 -2.38 -0.01 1.97 16 43 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 45 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 46 H 0.07 3.37 8.14 -2.39 -0.02 3.35 16 47 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -70.73 346.97 1.01 -69.72 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.98 Total: 26.20 kcal Atomic # 6 Polarization: -77.77 SS G_CDS: 3.39 Total: -74.38 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -0.91 Total: -80.17 kcal Atomic # 8 Polarization: -96.37 SS G_CDS: -4.21 Total: -100.58 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 112.24 SS G_CDS: -0.25 Total: 111.99 kcal Total: -70.73 1.01 -69.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832390170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.030 kcal (2) G-P(sol) polarization free energy of solvation -70.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds