Wall clock time and date at job start Tue Mar 31 2020 11:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86806 * 119.99738 * 2 1 4 4 H 1.48494 * 109.47251 * 272.42898 * 3 2 1 5 5 H 1.48501 * 109.46979 * 32.43385 * 3 2 1 6 6 H 1.48501 * 109.47020 * 152.43085 * 3 2 1 7 7 C 1.40028 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99839 * 347.99638 * 7 2 1 9 9 C 1.41546 * 120.00133 * 167.99636 * 7 2 1 10 10 C 1.41161 * 120.99582 * 149.38652 * 9 7 2 11 11 C 1.36589 * 119.12710 * 180.02562 * 10 9 7 12 12 N 1.32071 * 121.26222 * 359.74158 * 11 10 9 13 13 C 1.32500 * 122.22464 * 0.53595 * 12 11 10 14 14 N 1.39457 * 119.64939 * 179.74957 * 13 12 11 15 15 C 1.34778 * 119.99606 * 4.87863 * 14 13 12 16 16 O 1.21579 * 120.00702 * 354.89118 * 15 14 13 17 17 N 1.34780 * 119.99503 * 174.88795 * 15 14 13 18 18 C 1.45378 * 116.78082 * 0.02565 * 17 15 14 19 19 C 1.53146 * 109.86831 * 204.85931 * 18 17 15 20 20 C 1.52179 * 107.82244 * 307.06169 * 19 18 17 21 21 C 1.52572 * 109.78825 * 68.76832 * 20 19 18 22 22 H 1.08993 * 109.07721 * 70.18219 * 21 20 19 23 23 C 1.53946 * 108.88829 * 189.72860 * 21 20 19 24 24 C 1.53738 * 106.98689 * 123.86676 * 23 21 20 25 25 C 1.54156 * 105.83373 * 341.21328 * 24 23 21 26 26 C 1.43690 * 116.77315 * 180.02562 * 17 15 14 27 27 H 1.09001 * 107.40304 * 51.13712 * 26 17 15 28 28 C 1.38640 * 120.70398 * 359.46503 * 13 12 11 29 29 H 0.97003 * 120.00011 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.43752 * 0.04266 * 10 9 7 31 31 H 1.08004 * 119.37166 * 179.97438 * 11 10 9 32 32 H 0.96995 * 120.00279 * 184.88645 * 14 13 12 33 33 H 1.09003 * 109.39927 * 324.97914 * 18 17 15 34 34 H 1.08996 * 109.40719 * 84.73751 * 18 17 15 35 35 H 1.09003 * 109.83807 * 66.30947 * 19 18 17 36 36 H 1.08998 * 109.84102 * 187.28030 * 19 18 17 37 37 H 1.09002 * 108.65167 * 309.02280 * 20 19 18 38 38 H 1.08994 * 109.79780 * 189.22025 * 20 19 18 39 39 H 1.09007 * 109.96465 * 243.26153 * 23 21 20 40 40 H 1.09002 * 109.96145 * 4.47125 * 23 21 20 41 41 H 1.09000 * 110.17371 * 100.29410 * 24 23 21 42 42 H 1.09008 * 110.17158 * 222.09419 * 24 23 21 43 43 H 1.09003 * 110.33647 * 269.33560 * 25 24 23 44 44 H 1.08997 * 110.46174 * 147.08343 * 25 24 23 45 45 H 1.08001 * 120.66617 * 180.27994 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4375 2.0762 -1.3987 5 1 1.4654 2.6373 0.7509 6 1 3.5637 1.4260 0.6480 7 6 2.0076 -1.2126 -0.0005 8 1 1.4853 -2.1378 0.1936 9 6 3.3999 -1.2259 -0.2555 10 6 4.2358 -2.2046 0.3242 11 6 5.5742 -2.1813 0.0526 12 7 6.0961 -1.2658 -0.7435 13 6 5.3610 -0.3205 -1.3106 14 7 5.9691 0.6228 -2.1383 15 6 7.2788 0.5128 -2.4368 16 8 7.9513 -0.3534 -1.9119 17 7 7.8429 1.3630 -3.3174 18 6 6.9746 2.3715 -3.9025 19 6 7.5352 2.8196 -5.2554 20 6 8.9844 3.2337 -5.0450 21 6 9.8303 2.0064 -4.7196 22 1 9.9184 1.3876 -5.6124 23 6 11.2289 2.4694 -4.2727 24 6 11.4783 1.8659 -2.8809 25 6 10.0895 1.4781 -2.3355 26 6 9.2432 1.1828 -3.5850 27 1 9.3949 0.1327 -3.8346 28 6 3.9927 -0.2627 -1.0946 29 1 -0.4850 0.8401 0.0004 30 1 3.8225 -2.9620 0.9736 31 1 6.2174 -2.9280 0.4943 32 1 5.4496 1.3582 -2.4991 33 1 5.9780 1.9533 -4.0440 34 1 6.9143 3.2298 -3.2334 35 1 7.4925 1.9936 -5.9654 36 1 6.9587 3.6637 -5.6336 37 1 9.0287 3.9374 -4.2137 38 1 9.3668 3.7106 -5.9474 39 1 11.9817 2.1103 -4.9745 40 1 11.2607 3.5576 -4.2177 41 1 12.1104 0.9817 -2.9624 42 1 11.9459 2.6042 -2.2293 43 1 9.6589 2.3062 -1.7725 44 1 10.1611 0.5901 -1.7076 45 1 3.3934 0.5054 -1.5607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871725114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:50 Heat of formation + Delta-G solvation = 9.263150 kcal Electronic energy + Delta-G solvation = -26816.156841 eV Core-core repulsion = 23219.243030 eV Total energy + Delta-G solvation = -3596.913810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.99381 -39.17713 -37.82871 -35.55057 -34.40240 -33.72378 -33.15073 -31.27380 -29.45886 -29.05784 -27.70882 -25.98241 -24.93785 -22.55622 -22.28385 -21.92897 -20.75273 -19.95687 -18.71520 -18.07997 -17.63423 -16.24539 -16.10170 -15.74318 -15.55273 -15.23782 -14.68691 -14.28006 -14.24724 -14.00928 -13.82745 -13.70650 -13.34134 -13.08866 -12.92144 -12.82989 -12.51634 -12.22265 -11.69336 -11.57237 -11.32722 -11.24061 -10.97611 -10.90173 -10.85231 -10.77953 -10.65246 -10.52114 -10.45544 -10.02252 -9.82838 -9.59993 -9.35836 -8.44799 -8.19723 -7.85199 -7.22862 -7.03668 -4.73119 2.41548 2.64222 2.81481 2.99906 3.12586 3.24346 3.67817 3.88601 4.00764 4.33004 4.41590 4.45877 4.61373 4.68343 4.75377 5.01138 5.16851 5.25162 5.28304 5.38671 5.40459 5.41803 5.54525 5.59373 5.63027 5.67071 5.71589 5.75589 5.82917 5.91005 5.99453 6.15384 6.21526 6.29033 6.32925 6.39109 6.41351 6.57590 6.86286 6.97340 7.03100 7.19626 7.29894 7.65374 7.92702 8.15712 8.23110 8.45000 8.66432 9.00455 9.49947 9.97973 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.003755 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.783783 B = 7454.546273 C = 8369.716876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.085 3.915 3 Si 0.917 3.083 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.244 1.244 7 C -0.438 4.438 8 H 0.096 0.904 9 C 0.130 3.870 10 C -0.271 4.271 11 C 0.129 3.871 12 N -0.551 5.551 13 C 0.386 3.614 14 N -0.673 5.673 15 C 0.687 3.313 16 O -0.521 6.521 17 N -0.617 5.617 18 C 0.107 3.893 19 C -0.129 4.129 20 C -0.113 4.113 21 C -0.089 4.089 22 H 0.076 0.924 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.132 4.132 26 C 0.174 3.826 27 H 0.068 0.932 28 C -0.323 4.323 29 H 0.287 0.713 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.403 0.597 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.218 9.829 -10.128 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.468 4.468 8 H 0.113 0.887 9 C 0.122 3.878 10 C -0.295 4.295 11 C -0.022 4.022 12 N -0.270 5.270 13 C 0.157 3.843 14 N -0.322 5.322 15 C 0.388 3.612 16 O -0.391 6.391 17 N -0.356 5.356 18 C -0.017 4.017 19 C -0.167 4.167 20 C -0.150 4.150 21 C -0.108 4.108 22 H 0.094 0.906 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.171 4.171 26 C 0.070 3.930 27 H 0.086 0.914 28 C -0.349 4.349 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.146 0.854 32 H 0.240 0.760 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.434 9.257 -9.958 21.329 hybrid contribution -1.209 1.237 -0.094 1.733 sum 15.225 10.494 -10.052 21.046 Atomic orbital electron populations 1.69611 1.08019 1.30423 1.34952 1.26171 0.94820 1.01760 0.90759 0.86237 0.81033 0.79489 0.78785 1.19817 1.21929 1.16763 1.19504 0.90753 0.95744 1.40816 0.88655 1.17694 0.93436 0.89406 0.87305 1.21684 0.94337 1.05422 1.08034 1.21637 0.92801 0.94567 0.93228 1.67342 1.38063 1.06337 1.15306 1.17791 0.87779 0.88709 0.89997 1.42896 1.09241 1.29260 1.50834 1.16109 0.82025 0.82485 0.80630 1.90999 1.60457 1.34735 1.52920 1.46187 1.08944 1.34219 1.46239 1.21362 0.93560 0.91708 0.95065 1.21651 0.96711 1.01843 0.96498 1.21378 0.94634 0.97201 1.01818 1.21391 0.95160 0.96637 0.97631 0.90568 1.22148 0.95568 1.00656 0.96997 1.22054 0.97448 1.00527 0.95996 1.22579 0.94184 1.02359 0.97965 1.20038 0.78893 0.99764 0.94345 0.91390 1.21188 0.92696 1.08913 1.12082 0.90245 0.87223 0.85390 0.76044 0.90889 0.92183 0.91069 0.90231 0.91613 0.91398 0.91642 0.91530 0.91647 0.91718 0.92014 0.89893 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.85 13.92 55.55 0.77 -20.08 16 2 C 0.08 2.16 5.48 -17.35 -0.10 2.07 16 3 Si 0.92 20.24 24.42 -169.99 -4.15 16.09 16 4 H -0.27 -5.59 6.67 56.52 0.38 -5.22 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.24 -5.67 6.64 56.52 0.38 -5.30 16 7 C -0.44 -11.59 9.67 -37.65 -0.36 -11.95 16 8 H 0.10 2.63 8.06 -52.49 -0.42 2.20 16 9 C 0.13 3.30 5.17 -106.55 -0.55 2.74 16 10 C -0.27 -6.38 9.85 -39.07 -0.38 -6.77 16 11 C 0.13 2.97 11.10 -18.04 -0.20 2.77 16 12 N -0.55 -13.58 7.86 -12.75 -0.10 -13.68 16 13 C 0.39 9.04 7.42 -154.67 -1.15 7.90 16 14 N -0.67 -13.07 5.15 -15.86 -0.08 -13.15 16 15 C 0.69 13.05 7.81 -86.91 -0.68 12.37 16 16 O -0.52 -11.79 12.95 5.30 0.07 -11.72 16 17 N -0.62 -8.81 2.96 -174.76 -0.52 -9.33 16 18 C 0.11 1.16 5.54 -4.57 -0.03 1.14 16 19 C -0.13 -1.08 6.10 -27.07 -0.17 -1.24 16 20 C -0.11 -0.90 4.89 -27.37 -0.13 -1.04 16 21 C -0.09 -0.83 2.98 -90.85 -0.27 -1.10 16 22 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 23 C -0.12 -0.94 6.42 -25.85 -0.17 -1.11 16 24 C -0.12 -1.18 6.81 -25.74 -0.18 -1.35 16 25 C -0.13 -1.71 5.71 -25.72 -0.15 -1.86 16 26 C 0.17 2.25 2.51 -69.53 -0.17 2.08 16 27 H 0.07 1.02 7.79 -51.93 -0.40 0.61 16 28 C -0.32 -7.76 6.94 -38.45 -0.27 -8.03 16 29 H 0.29 6.70 8.29 -40.82 -0.34 6.36 16 30 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 31 H 0.13 2.54 8.06 -52.48 -0.42 2.12 16 32 H 0.40 6.50 6.32 -40.82 -0.26 6.25 16 33 H 0.07 0.79 6.40 -51.93 -0.33 0.46 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.55 7.95 -51.93 -0.41 0.14 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.49 7.55 -51.93 -0.39 0.10 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 1.29 7.33 -51.93 -0.38 0.91 16 45 H 0.11 2.44 4.42 -52.49 -0.23 2.21 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -31.11 345.54 -10.42 -41.52 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.67 Total: 8.54 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -4.95 Total: -3.39 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.08 Total: -56.24 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.15 Total: 16.09 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.11 -10.42 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.785 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds