Wall clock time and date at job start Tue Mar 31 2020 11:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86806 * 119.99738 * 2 1 4 4 H 1.48494 * 109.47251 * 272.42898 * 3 2 1 5 5 H 1.48501 * 109.46979 * 32.43385 * 3 2 1 6 6 H 1.48501 * 109.47020 * 152.43085 * 3 2 1 7 7 C 1.40028 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99839 * 347.99638 * 7 2 1 9 9 C 1.41546 * 120.00133 * 167.99636 * 7 2 1 10 10 C 1.41161 * 120.99582 * 149.38652 * 9 7 2 11 11 C 1.36589 * 119.12710 * 180.02562 * 10 9 7 12 12 N 1.32071 * 121.26222 * 359.74158 * 11 10 9 13 13 C 1.32500 * 122.22464 * 0.53595 * 12 11 10 14 14 N 1.39457 * 119.64939 * 179.74957 * 13 12 11 15 15 C 1.34778 * 119.99606 * 4.87863 * 14 13 12 16 16 O 1.21579 * 120.00702 * 354.89118 * 15 14 13 17 17 N 1.34780 * 119.99503 * 174.88795 * 15 14 13 18 18 C 1.45378 * 116.78082 * 0.02565 * 17 15 14 19 19 C 1.53146 * 109.86831 * 204.85931 * 18 17 15 20 20 C 1.52179 * 107.82244 * 307.06169 * 19 18 17 21 21 C 1.52572 * 109.78825 * 68.76832 * 20 19 18 22 22 H 1.08993 * 109.07721 * 70.18219 * 21 20 19 23 23 C 1.53946 * 108.88829 * 189.72860 * 21 20 19 24 24 C 1.53738 * 106.98689 * 123.86676 * 23 21 20 25 25 C 1.54156 * 105.83373 * 341.21328 * 24 23 21 26 26 C 1.43690 * 116.77315 * 180.02562 * 17 15 14 27 27 H 1.09001 * 107.40304 * 51.13712 * 26 17 15 28 28 C 1.38640 * 120.70398 * 359.46503 * 13 12 11 29 29 H 0.97003 * 120.00011 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.43752 * 0.04266 * 10 9 7 31 31 H 1.08004 * 119.37166 * 179.97438 * 11 10 9 32 32 H 0.96995 * 120.00279 * 184.88645 * 14 13 12 33 33 H 1.09003 * 109.39927 * 324.97914 * 18 17 15 34 34 H 1.08996 * 109.40719 * 84.73751 * 18 17 15 35 35 H 1.09003 * 109.83807 * 66.30947 * 19 18 17 36 36 H 1.08998 * 109.84102 * 187.28030 * 19 18 17 37 37 H 1.09002 * 108.65167 * 309.02280 * 20 19 18 38 38 H 1.08994 * 109.79780 * 189.22025 * 20 19 18 39 39 H 1.09007 * 109.96465 * 243.26153 * 23 21 20 40 40 H 1.09002 * 109.96145 * 4.47125 * 23 21 20 41 41 H 1.09000 * 110.17371 * 100.29410 * 24 23 21 42 42 H 1.09008 * 110.17158 * 222.09419 * 24 23 21 43 43 H 1.09003 * 110.33647 * 269.33560 * 25 24 23 44 44 H 1.08997 * 110.46174 * 147.08343 * 25 24 23 45 45 H 1.08001 * 120.66617 * 180.27994 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4375 2.0762 -1.3987 5 1 1.4654 2.6373 0.7509 6 1 3.5637 1.4260 0.6480 7 6 2.0076 -1.2126 -0.0005 8 1 1.4853 -2.1378 0.1936 9 6 3.3999 -1.2259 -0.2555 10 6 4.2358 -2.2046 0.3242 11 6 5.5742 -2.1813 0.0526 12 7 6.0961 -1.2658 -0.7435 13 6 5.3610 -0.3205 -1.3106 14 7 5.9691 0.6228 -2.1383 15 6 7.2788 0.5128 -2.4368 16 8 7.9513 -0.3534 -1.9119 17 7 7.8429 1.3630 -3.3174 18 6 6.9746 2.3715 -3.9025 19 6 7.5352 2.8196 -5.2554 20 6 8.9844 3.2337 -5.0450 21 6 9.8303 2.0064 -4.7196 22 1 9.9184 1.3876 -5.6124 23 6 11.2289 2.4694 -4.2727 24 6 11.4783 1.8659 -2.8809 25 6 10.0895 1.4781 -2.3355 26 6 9.2432 1.1828 -3.5850 27 1 9.3949 0.1327 -3.8346 28 6 3.9927 -0.2627 -1.0946 29 1 -0.4850 0.8401 0.0004 30 1 3.8225 -2.9620 0.9736 31 1 6.2174 -2.9280 0.4943 32 1 5.4496 1.3582 -2.4991 33 1 5.9780 1.9533 -4.0440 34 1 6.9143 3.2298 -3.2334 35 1 7.4925 1.9936 -5.9654 36 1 6.9587 3.6637 -5.6336 37 1 9.0287 3.9374 -4.2137 38 1 9.3668 3.7106 -5.9474 39 1 11.9817 2.1103 -4.9745 40 1 11.2607 3.5576 -4.2177 41 1 12.1104 0.9817 -2.9624 42 1 11.9459 2.6042 -2.2293 43 1 9.6589 2.3062 -1.7725 44 1 10.1611 0.5901 -1.7076 45 1 3.3934 0.5054 -1.5607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871725114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:48 Heat of formation + Delta-G solvation = -8.634143 kcal Electronic energy + Delta-G solvation = -26816.932925 eV Core-core repulsion = 23219.243030 eV Total energy + Delta-G solvation = -3597.689895 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.24139 -40.70987 -39.24904 -36.62512 -36.12887 -35.44421 -34.14712 -33.19806 -30.88123 -30.09303 -28.78064 -27.90107 -25.90182 -24.23689 -23.68499 -23.05082 -21.78633 -21.34240 -19.97512 -19.55308 -19.06193 -17.85175 -17.38791 -17.18006 -16.72823 -16.51976 -16.40636 -15.95361 -15.35013 -15.26044 -14.90510 -14.83677 -14.75474 -14.61804 -14.48681 -14.00824 -13.63119 -13.43113 -13.09622 -12.77964 -12.64916 -12.63579 -12.52665 -12.11148 -12.07215 -11.85255 -11.65372 -11.62313 -11.54769 -11.37398 -11.26874 -11.16955 -11.02397 -10.14352 -9.70118 -9.64485 -8.99207 -8.95160 -6.74263 0.58516 0.75357 1.21401 1.38015 1.46012 1.49057 2.08432 2.14109 2.67682 2.75288 3.47945 3.51521 3.61948 3.73203 3.92433 3.95154 3.97203 4.24033 4.36704 4.39510 4.47142 4.47578 4.57463 4.57793 4.62885 4.65102 4.69862 4.74454 4.88208 4.89479 5.03515 5.06786 5.09815 5.13257 5.17392 5.22724 5.28587 5.29836 5.38191 5.50565 5.50924 5.63959 5.76712 5.81663 6.08224 6.25269 6.50821 6.67718 6.74140 7.46826 7.73266 8.10504 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.003755 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.783783 B = 7454.546273 C = 8369.716876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.052 3.948 3 Si 0.967 3.033 4 H -0.243 1.243 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.467 4.467 8 H 0.067 0.933 9 C 0.116 3.884 10 C -0.281 4.281 11 C 0.129 3.871 12 N -0.571 5.571 13 C 0.383 3.617 14 N -0.666 5.666 15 C 0.680 3.320 16 O -0.565 6.565 17 N -0.604 5.604 18 C 0.093 3.907 19 C -0.123 4.123 20 C -0.109 4.109 21 C -0.085 4.085 22 H 0.083 0.917 23 C -0.109 4.109 24 C -0.117 4.117 25 C -0.131 4.131 26 C 0.170 3.830 27 H 0.039 0.961 28 C -0.327 4.327 29 H 0.298 0.702 30 H 0.122 0.878 31 H 0.158 0.842 32 H 0.418 0.582 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.045 0.955 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.852 12.796 -12.177 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.165 4.165 3 Si 0.790 3.210 4 H -0.168 1.168 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.498 4.498 8 H 0.086 0.914 9 C 0.107 3.893 10 C -0.304 4.304 11 C -0.023 4.023 12 N -0.291 5.291 13 C 0.152 3.848 14 N -0.317 5.317 15 C 0.381 3.619 16 O -0.438 6.438 17 N -0.341 5.341 18 C -0.029 4.029 19 C -0.160 4.160 20 C -0.147 4.147 21 C -0.104 4.104 22 H 0.102 0.898 23 C -0.146 4.146 24 C -0.155 4.155 25 C -0.170 4.170 26 C 0.066 3.934 27 H 0.057 0.943 28 C -0.353 4.353 29 H 0.109 0.891 30 H 0.140 0.860 31 H 0.175 0.825 32 H 0.258 0.742 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 18.054 12.274 -12.062 24.942 hybrid contribution -1.656 0.218 0.560 1.762 sum 16.397 12.493 -11.503 23.606 Atomic orbital electron populations 1.69623 1.09013 1.31925 1.35663 1.26822 0.95453 1.04161 0.90061 0.85487 0.78848 0.76352 0.80280 1.16785 1.20279 1.18874 1.19487 0.91561 0.95516 1.43235 0.91446 1.17883 0.93232 0.90451 0.87700 1.21880 0.94644 1.05563 1.08361 1.22097 0.92980 0.94641 0.92536 1.67471 1.38810 1.07000 1.15822 1.17999 0.87847 0.88932 0.89974 1.42803 1.09706 1.28966 1.50193 1.16368 0.81602 0.82821 0.81126 1.90967 1.61286 1.36811 1.54733 1.46251 1.09710 1.33585 1.44559 1.21728 0.93160 0.91101 0.96958 1.21667 0.97293 1.02623 0.94450 1.21399 0.93996 0.96296 1.03005 1.21406 0.95880 0.97029 0.96100 0.89816 1.22144 0.95061 1.01533 0.95883 1.22035 0.95132 1.01062 0.97308 1.22484 0.96646 1.00271 0.97572 1.20218 0.78219 0.99189 0.95815 0.94310 1.21259 0.93109 1.08963 1.11940 0.89075 0.86012 0.82504 0.74225 0.90761 0.90801 0.91444 0.87539 0.91591 0.88813 0.89911 0.89882 0.91601 0.90544 0.92921 0.93636 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.68 13.92 21.84 0.30 -43.38 16 2 C 0.05 2.67 5.48 85.29 0.47 3.14 16 3 Si 0.97 40.75 24.42 68.60 1.68 42.42 16 4 H -0.24 -9.07 6.67 99.48 0.66 -8.40 16 5 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.26 -11.97 6.64 99.48 0.66 -11.31 16 7 C -0.47 -25.49 9.67 23.52 0.23 -25.26 16 8 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 9 C 0.12 5.95 5.17 -21.11 -0.11 5.84 16 10 C -0.28 -13.39 9.85 22.60 0.22 -13.17 16 11 C 0.13 5.92 11.10 84.27 0.94 6.86 16 12 N -0.57 -28.29 7.86 -194.27 -1.53 -29.82 16 13 C 0.38 17.85 7.42 132.76 0.99 18.84 16 14 N -0.67 -25.41 5.15 -322.36 -1.66 -27.07 16 15 C 0.68 25.88 7.81 179.05 1.40 27.28 16 16 O -0.56 -26.25 12.95 -3.97 -0.05 -26.30 16 17 N -0.60 -16.70 2.96 -825.08 -2.44 -19.14 16 18 C 0.09 1.79 5.54 86.64 0.48 2.27 16 19 C -0.12 -1.58 6.10 30.37 0.19 -1.40 16 20 C -0.11 -1.30 4.89 30.18 0.15 -1.15 16 21 C -0.09 -1.35 2.98 -10.94 -0.03 -1.39 16 22 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 23 C -0.11 -1.40 6.42 31.16 0.20 -1.20 16 24 C -0.12 -2.07 6.81 31.23 0.21 -1.86 16 25 C -0.13 -3.41 5.71 31.25 0.18 -3.23 16 26 C 0.17 4.29 2.51 45.44 0.11 4.41 16 27 H 0.04 1.20 7.79 -2.39 -0.02 1.18 16 28 C -0.33 -15.62 6.94 23.00 0.16 -15.46 16 29 H 0.30 13.85 8.29 -92.71 -0.77 13.08 16 30 H 0.12 5.36 8.06 -2.91 -0.02 5.34 16 31 H 0.16 6.11 8.06 -2.91 -0.02 6.09 16 32 H 0.42 12.81 6.32 -92.71 -0.59 12.22 16 33 H 0.07 1.42 6.40 -2.39 -0.02 1.41 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 0.96 8.12 -2.39 -0.02 0.94 16 36 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.82 7.95 -2.39 -0.02 0.80 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.08 0.85 7.55 -2.39 -0.02 0.83 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.04 1.51 7.33 -2.39 -0.02 1.49 16 45 H 0.12 5.23 4.42 -2.91 -0.01 5.21 16 Total: -1.00 -70.05 345.54 2.41 -67.64 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.33 Total: 31.14 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 5.77 Total: 4.51 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -5.32 Total: -119.41 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.05 Total: -26.30 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 1.68 Total: 42.42 kcal Total: -70.05 2.41 -67.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.010 kcal (2) G-P(sol) polarization free energy of solvation -70.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds