Wall clock time and date at job start Tue Mar 31 2020 11:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86792 * 120.00380 * 2 1 4 4 H 1.48510 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47391 * 299.99965 * 3 2 1 6 6 H 1.48495 * 109.47216 * 60.00157 * 3 2 1 7 7 C 1.40042 * 119.99498 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99628 * 194.23041 * 7 2 1 9 9 C 1.41543 * 119.99805 * 14.22562 * 7 2 1 10 10 C 1.41168 * 120.99539 * 200.78506 * 9 7 2 11 11 C 1.36585 * 119.12754 * 179.97438 * 10 9 7 12 12 N 1.32073 * 121.25803 * 359.97438 * 11 10 9 13 13 C 1.32480 * 122.23168 * 0.02562 * 12 11 10 14 14 N 1.39459 * 119.65001 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00071 * 6.47185 * 14 13 12 16 16 O 1.21577 * 119.99714 * 355.60764 * 15 14 13 17 17 N 1.34775 * 120.00062 * 175.61087 * 15 14 13 18 18 C 1.46501 * 119.99676 * 179.72653 * 17 15 14 19 19 C 1.53004 * 109.47034 * 180.27487 * 18 17 15 20 20 C 1.55920 * 115.92199 * 62.05764 * 19 18 17 21 21 C 1.56529 * 103.72516 * 160.30668 * 20 19 18 22 22 C 1.55927 * 104.82206 * 0.40233 * 21 20 19 23 23 C 1.55920 * 104.49819 * 70.00982 * 22 21 20 24 24 C 1.54581 * 104.64358 * 289.72161 * 23 22 21 25 25 C 1.56943 * 116.22484 * 181.04743 * 19 18 17 26 26 C 1.38648 * 120.70236 * 0.27225 * 13 12 11 27 27 H 0.96998 * 119.99411 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.43225 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.37252 * 179.97438 * 11 10 9 30 30 H 0.97006 * 120.00565 * 186.47143 * 14 13 12 31 31 H 0.96997 * 120.00067 * 359.97438 * 17 15 14 32 32 H 1.09008 * 109.46918 * 300.27201 * 18 17 15 33 33 H 1.08998 * 109.47218 * 60.27064 * 18 17 15 34 34 H 1.09001 * 110.40083 * 278.82268 * 20 19 18 35 35 H 1.08995 * 110.40667 * 41.23826 * 20 19 18 36 36 H 1.09002 * 110.54098 * 241.43751 * 21 20 19 37 37 H 1.08997 * 110.08882 * 119.13495 * 21 20 19 38 38 H 1.08999 * 115.91849 * 198.89378 * 22 21 20 39 39 H 1.09006 * 110.40308 * 170.93422 * 23 22 21 40 40 H 1.08995 * 110.40655 * 48.51622 * 23 22 21 41 41 H 1.09009 * 110.40106 * 241.21050 * 24 23 22 42 42 H 1.08998 * 110.50487 * 118.84114 * 24 23 22 43 43 H 1.09002 * 112.02764 * 297.12035 * 25 19 18 44 44 H 1.09005 * 112.03187 * 63.64291 * 25 19 18 45 45 H 1.08008 * 120.66212 * 179.70480 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7016 1.3461 0.0006 5 1 1.8829 2.3964 -1.2125 6 1 1.8829 2.3963 1.2125 7 6 2.0076 -1.2129 -0.0005 8 1 3.0627 -1.2273 0.2294 9 6 1.3322 -2.4196 -0.3023 10 6 1.8587 -3.6669 0.0977 11 6 1.1750 -4.8077 -0.2133 12 7 0.0348 -4.7636 -0.8784 13 6 -0.5060 -3.6223 -1.2787 14 7 -1.7129 -3.6384 -1.9773 15 6 -2.3886 -4.7947 -2.1288 16 8 -1.9081 -5.8366 -1.7266 17 7 -3.5967 -4.7960 -2.7261 18 6 -4.3284 -6.0538 -2.8962 19 6 -5.6572 -5.7792 -3.6031 20 6 -5.5542 -5.1876 -5.0421 21 6 -6.9526 -5.4991 -5.6726 22 6 -7.7440 -6.2312 -4.5461 23 6 -8.0231 -5.1252 -3.4831 24 6 -6.6411 -4.8258 -2.8586 25 6 -6.5844 -7.0223 -3.8441 26 6 0.1177 -2.4125 -1.0149 27 1 -0.4849 0.8401 -0.0004 28 1 2.7894 -3.7183 0.6431 29 1 1.5744 -5.7641 0.0904 30 1 -2.0662 -2.8173 -2.3542 31 1 -3.9801 -3.9647 -3.0467 32 1 -3.7330 -6.7422 -3.4961 33 1 -4.5213 -6.4968 -1.9191 34 1 -5.3837 -4.1119 -4.9993 35 1 -4.7554 -5.6780 -5.5983 36 1 -6.8441 -6.1463 -6.5430 37 1 -7.4542 -4.5714 -5.9480 38 1 -8.6091 -6.8097 -4.8703 39 1 -8.7117 -5.4940 -2.7228 40 1 -8.4258 -4.2321 -3.9606 41 1 -6.6503 -5.0474 -1.7913 42 1 -6.3630 -3.7855 -3.0275 43 1 -6.1194 -7.7580 -4.5004 44 1 -6.9194 -7.4701 -2.9084 45 1 -0.3214 -1.4828 -1.3457 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871728504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:16 Heat of formation + Delta-G solvation = 4.462217 kcal Electronic energy + Delta-G solvation = -25696.670424 eV Core-core repulsion = 22099.548430 eV Total energy + Delta-G solvation = -3597.121994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.61190 -39.54282 -37.92608 -34.65222 -34.05985 -33.68024 -30.59589 -30.54973 -30.17416 -28.32937 -28.08188 -25.99565 -25.01464 -22.41500 -21.94103 -21.57625 -20.27519 -19.75888 -18.63635 -17.97813 -17.60209 -16.29053 -15.68527 -15.43546 -15.26016 -15.18066 -14.88768 -14.51427 -14.14701 -14.04223 -13.36933 -13.22013 -12.84163 -12.78878 -12.62404 -12.58561 -12.21006 -11.92240 -11.48252 -11.43845 -11.39591 -11.15998 -11.10000 -11.06794 -10.97446 -10.87449 -10.53155 -10.25911 -10.11213 -10.07887 -9.72774 -9.51860 -9.35394 -8.70966 -7.95867 -7.68275 -6.96336 -6.75393 -4.60322 2.72760 2.82461 3.01591 3.07100 3.09110 3.27644 3.84769 3.93527 4.17290 4.19630 4.20936 4.67635 4.71851 4.79119 4.89407 4.91824 5.09464 5.11930 5.20175 5.21055 5.49401 5.54214 5.71034 5.72472 5.75269 5.76972 5.80631 5.84462 5.88288 5.91528 6.01979 6.02258 6.14181 6.17177 6.59163 6.66909 6.79452 6.85114 6.96371 7.18465 7.35025 7.48946 7.53696 7.90334 8.14944 8.45265 8.50736 8.76611 8.77999 9.25494 9.79219 10.06931 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.002684 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.289537 B =10430.381144 C =11409.494727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.450 4.450 8 H 0.082 0.918 9 C 0.140 3.860 10 C -0.286 4.286 11 C 0.119 3.881 12 N -0.554 5.554 13 C 0.355 3.645 14 N -0.668 5.668 15 C 0.691 3.309 16 O -0.534 6.534 17 N -0.751 5.751 18 C 0.173 3.827 19 C -0.088 4.088 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.105 4.105 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.110 4.110 26 C -0.251 4.251 27 H 0.280 0.720 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.403 0.597 31 H 0.390 0.610 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.584 -4.545 -9.484 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.481 4.481 8 H 0.100 0.900 9 C 0.132 3.868 10 C -0.310 4.310 11 C -0.034 4.034 12 N -0.273 5.273 13 C 0.129 3.871 14 N -0.316 5.316 15 C 0.390 3.610 16 O -0.405 6.405 17 N -0.409 5.409 18 C 0.048 3.952 19 C -0.089 4.089 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.123 4.123 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.148 4.148 26 C -0.277 4.277 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.139 0.861 30 H 0.237 0.763 31 H 0.223 0.777 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.816 -6.193 -9.289 19.360 hybrid contribution 0.349 2.533 -0.069 2.558 sum -15.468 -3.660 -9.358 18.445 Atomic orbital electron populations 1.69774 1.07650 1.29037 1.34971 1.25986 0.94819 1.01553 0.91970 0.86182 0.80967 0.80545 0.78589 1.18299 1.19660 1.19900 1.19639 0.97010 0.90406 1.41052 0.90006 1.17579 0.90335 0.92262 0.86633 1.21633 1.03994 0.93985 1.11416 1.21466 0.90522 0.96745 0.94687 1.67207 1.13628 1.27134 1.19373 1.17979 0.85313 0.90764 0.93018 1.42551 1.22109 1.09646 1.57289 1.16086 0.80487 0.84727 0.79675 1.91009 1.67574 1.29907 1.52058 1.45113 1.19502 1.10377 1.65947 1.20587 0.89134 0.85639 0.99795 1.23094 0.93824 0.96503 0.95472 1.22951 0.96955 1.00496 0.94764 1.22939 0.95492 0.99861 0.97436 1.23527 0.97154 0.96158 0.95510 1.22613 0.96930 0.98282 0.97901 1.22623 0.94153 0.98907 0.99592 1.23476 0.95047 0.95926 1.00379 1.21694 1.01262 0.95604 1.09140 0.90885 0.88127 0.86108 0.76294 0.77706 0.91570 0.91566 0.91683 0.91488 0.91930 0.91906 0.88490 0.91937 0.91840 0.91560 0.91735 0.90890 0.91040 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.34 10.60 55.55 0.59 -18.75 16 2 C 0.08 1.81 5.28 -17.34 -0.09 1.72 16 3 Si 0.91 17.90 29.58 -169.99 -5.03 12.87 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 7 C -0.45 -11.62 9.14 -37.65 -0.34 -11.97 16 8 H 0.08 2.03 7.89 -52.49 -0.41 1.61 16 9 C 0.14 3.74 5.64 -106.55 -0.60 3.14 16 10 C -0.29 -7.16 9.85 -39.07 -0.38 -7.55 16 11 C 0.12 2.96 11.10 -18.04 -0.20 2.76 16 12 N -0.55 -14.64 7.86 -12.76 -0.10 -14.74 16 13 C 0.36 8.85 7.42 -154.69 -1.15 7.71 16 14 N -0.67 -13.55 5.40 -15.86 -0.09 -13.63 16 15 C 0.69 13.70 8.52 -86.92 -0.74 12.96 16 16 O -0.53 -13.02 14.60 5.30 0.08 -12.94 16 17 N -0.75 -10.58 5.36 -65.22 -0.35 -10.93 16 18 C 0.17 2.16 5.48 -4.04 -0.02 2.14 16 19 C -0.09 -0.81 1.00 -149.25 -0.15 -0.96 16 20 C -0.11 -0.97 5.78 -23.27 -0.13 -1.10 16 21 C -0.12 -0.87 6.26 -23.27 -0.15 -1.02 16 22 C -0.11 -0.75 5.19 -85.35 -0.44 -1.19 16 23 C -0.12 -0.89 6.21 -24.34 -0.15 -1.04 16 24 C -0.12 -1.01 5.57 -24.34 -0.14 -1.14 16 25 C -0.11 -0.89 6.13 -22.46 -0.14 -1.03 16 26 C -0.25 -6.46 8.66 -38.46 -0.33 -6.79 16 27 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 28 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 29 H 0.12 2.62 8.06 -52.48 -0.42 2.20 16 30 H 0.40 6.69 8.72 -40.82 -0.36 6.33 16 31 H 0.39 4.43 8.13 -40.82 -0.33 4.10 16 32 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.54 7.80 -51.93 -0.41 0.13 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.44 7.83 -51.93 -0.41 0.03 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.45 7.83 -51.93 -0.41 0.04 16 41 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.06 0.55 7.77 -51.93 -0.40 0.15 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.14 3.44 5.89 -52.48 -0.31 3.13 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -31.69 361.51 -11.43 -43.12 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -6.82 Total: 12.94 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -5.16 Total: -3.38 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.05 Total: -58.06 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.69 -11.43 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.586 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds