Wall clock time and date at job start Tue Mar 31 2020 11:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86792 * 120.00380 * 2 1 4 4 H 1.48510 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47391 * 299.99965 * 3 2 1 6 6 H 1.48495 * 109.47216 * 60.00157 * 3 2 1 7 7 C 1.40042 * 119.99498 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99628 * 194.23041 * 7 2 1 9 9 C 1.41543 * 119.99805 * 14.22562 * 7 2 1 10 10 C 1.41168 * 120.99539 * 200.78506 * 9 7 2 11 11 C 1.36585 * 119.12754 * 179.97438 * 10 9 7 12 12 N 1.32073 * 121.25803 * 359.97438 * 11 10 9 13 13 C 1.32480 * 122.23168 * 0.02562 * 12 11 10 14 14 N 1.39459 * 119.65001 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00071 * 6.47185 * 14 13 12 16 16 O 1.21577 * 119.99714 * 355.60764 * 15 14 13 17 17 N 1.34775 * 120.00062 * 175.61087 * 15 14 13 18 18 C 1.46501 * 119.99676 * 179.72653 * 17 15 14 19 19 C 1.53004 * 109.47034 * 180.27487 * 18 17 15 20 20 C 1.55920 * 115.92199 * 62.05764 * 19 18 17 21 21 C 1.56529 * 103.72516 * 160.30668 * 20 19 18 22 22 C 1.55927 * 104.82206 * 0.40233 * 21 20 19 23 23 C 1.55920 * 104.49819 * 70.00982 * 22 21 20 24 24 C 1.54581 * 104.64358 * 289.72161 * 23 22 21 25 25 C 1.56943 * 116.22484 * 181.04743 * 19 18 17 26 26 C 1.38648 * 120.70236 * 0.27225 * 13 12 11 27 27 H 0.96998 * 119.99411 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.43225 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.37252 * 179.97438 * 11 10 9 30 30 H 0.97006 * 120.00565 * 186.47143 * 14 13 12 31 31 H 0.96997 * 120.00067 * 359.97438 * 17 15 14 32 32 H 1.09008 * 109.46918 * 300.27201 * 18 17 15 33 33 H 1.08998 * 109.47218 * 60.27064 * 18 17 15 34 34 H 1.09001 * 110.40083 * 278.82268 * 20 19 18 35 35 H 1.08995 * 110.40667 * 41.23826 * 20 19 18 36 36 H 1.09002 * 110.54098 * 241.43751 * 21 20 19 37 37 H 1.08997 * 110.08882 * 119.13495 * 21 20 19 38 38 H 1.08999 * 115.91849 * 198.89378 * 22 21 20 39 39 H 1.09006 * 110.40308 * 170.93422 * 23 22 21 40 40 H 1.08995 * 110.40655 * 48.51622 * 23 22 21 41 41 H 1.09009 * 110.40106 * 241.21050 * 24 23 22 42 42 H 1.08998 * 110.50487 * 118.84114 * 24 23 22 43 43 H 1.09002 * 112.02764 * 297.12035 * 25 19 18 44 44 H 1.09005 * 112.03187 * 63.64291 * 25 19 18 45 45 H 1.08008 * 120.66212 * 179.70480 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7016 1.3461 0.0006 5 1 1.8829 2.3964 -1.2125 6 1 1.8829 2.3963 1.2125 7 6 2.0076 -1.2129 -0.0005 8 1 3.0627 -1.2273 0.2294 9 6 1.3322 -2.4196 -0.3023 10 6 1.8587 -3.6669 0.0977 11 6 1.1750 -4.8077 -0.2133 12 7 0.0348 -4.7636 -0.8784 13 6 -0.5060 -3.6223 -1.2787 14 7 -1.7129 -3.6384 -1.9773 15 6 -2.3886 -4.7947 -2.1288 16 8 -1.9081 -5.8366 -1.7266 17 7 -3.5967 -4.7960 -2.7261 18 6 -4.3284 -6.0538 -2.8962 19 6 -5.6572 -5.7792 -3.6031 20 6 -5.5542 -5.1876 -5.0421 21 6 -6.9526 -5.4991 -5.6726 22 6 -7.7440 -6.2312 -4.5461 23 6 -8.0231 -5.1252 -3.4831 24 6 -6.6411 -4.8258 -2.8586 25 6 -6.5844 -7.0223 -3.8441 26 6 0.1177 -2.4125 -1.0149 27 1 -0.4849 0.8401 -0.0004 28 1 2.7894 -3.7183 0.6431 29 1 1.5744 -5.7641 0.0904 30 1 -2.0662 -2.8173 -2.3542 31 1 -3.9801 -3.9647 -3.0467 32 1 -3.7330 -6.7422 -3.4961 33 1 -4.5213 -6.4968 -1.9191 34 1 -5.3837 -4.1119 -4.9993 35 1 -4.7554 -5.6780 -5.5983 36 1 -6.8441 -6.1463 -6.5430 37 1 -7.4542 -4.5714 -5.9480 38 1 -8.6091 -6.8097 -4.8703 39 1 -8.7117 -5.4940 -2.7228 40 1 -8.4258 -4.2321 -3.9606 41 1 -6.6503 -5.0474 -1.7913 42 1 -6.3630 -3.7855 -3.0275 43 1 -6.1194 -7.7580 -4.5004 44 1 -6.9194 -7.4701 -2.9084 45 1 -0.3214 -1.4828 -1.3457 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871728504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:15 Heat of formation + Delta-G solvation = -13.418658 kcal Electronic energy + Delta-G solvation = -25697.445797 eV Core-core repulsion = 22099.548430 eV Total energy + Delta-G solvation = -3597.897367 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.59377 -40.97232 -39.69712 -36.26030 -35.61067 -35.48162 -32.42450 -31.37552 -31.22110 -29.93741 -28.75705 -27.92283 -26.08643 -23.81687 -23.31125 -23.04999 -21.75227 -20.68508 -19.71799 -19.35716 -19.18485 -17.83645 -17.05816 -16.72217 -16.47873 -16.09979 -16.06593 -16.00841 -15.79395 -15.66389 -14.83712 -14.66673 -14.62705 -14.31817 -13.88306 -13.42713 -13.31595 -13.14809 -12.87067 -12.67877 -12.58358 -12.21126 -12.06114 -12.03457 -11.87841 -11.82042 -11.72045 -11.66724 -11.51867 -11.31632 -11.17412 -11.13646 -10.77519 -10.06769 -9.91648 -9.60907 -8.82090 -8.59989 -6.56421 0.85677 1.01567 1.42124 1.56220 1.58453 1.64143 2.20711 2.28766 2.84311 3.16605 3.48620 3.50471 3.59892 3.79661 3.99882 4.17354 4.21906 4.26961 4.41037 4.44806 4.57658 4.60162 4.68161 4.76754 4.81722 4.86644 4.87863 4.93365 4.95356 5.10928 5.12327 5.12896 5.19801 5.23743 5.26830 5.27569 5.41424 5.43945 5.47881 5.52342 5.55935 5.67201 5.85391 6.00029 6.27966 6.58260 6.81150 6.84041 7.00484 7.63327 7.92543 8.26609 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.002684 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.289537 B =10430.381144 C =11409.494727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.266 1.266 7 C -0.478 4.478 8 H 0.084 0.916 9 C 0.111 3.889 10 C -0.299 4.299 11 C 0.113 3.887 12 N -0.582 5.582 13 C 0.352 3.648 14 N -0.661 5.661 15 C 0.689 3.311 16 O -0.582 6.582 17 N -0.726 5.726 18 C 0.174 3.826 19 C -0.087 4.087 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.097 4.097 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.111 4.111 26 C -0.267 4.267 27 H 0.292 0.708 28 H 0.115 0.885 29 H 0.146 0.854 30 H 0.419 0.581 31 H 0.407 0.593 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.905 -3.181 -10.431 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.180 4.180 3 Si 0.810 3.190 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.191 1.191 7 C -0.508 4.508 8 H 0.102 0.898 9 C 0.102 3.898 10 C -0.323 4.323 11 C -0.040 4.040 12 N -0.302 5.302 13 C 0.124 3.876 14 N -0.310 5.310 15 C 0.388 3.612 16 O -0.457 6.457 17 N -0.384 5.384 18 C 0.050 3.950 19 C -0.088 4.088 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.115 4.115 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.149 4.149 26 C -0.293 4.293 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.164 0.836 30 H 0.256 0.744 31 H 0.243 0.757 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.132 0.868 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.207 -4.814 -10.272 20.610 hybrid contribution 0.709 2.090 0.243 2.221 sum -16.498 -2.724 -10.029 19.498 Atomic orbital electron populations 1.69795 1.08993 1.30802 1.33906 1.26868 0.95657 1.04670 0.90834 0.85031 0.79290 0.75582 0.79050 1.18226 1.18549 1.19061 1.19925 0.97360 0.91320 1.42196 0.89816 1.18026 0.91150 0.93339 0.87255 1.21817 1.04759 0.93775 1.11993 1.21900 0.90190 0.97850 0.94071 1.67323 1.14519 1.27856 1.20541 1.18193 0.86351 0.90296 0.92713 1.42427 1.21012 1.10766 1.56768 1.16270 0.81539 0.83770 0.79611 1.90972 1.69075 1.31424 1.54186 1.44902 1.17476 1.11954 1.64021 1.20669 0.90454 0.84536 0.99382 1.22977 0.92203 0.97806 0.95800 1.22962 0.97805 1.00496 0.93949 1.22931 0.94477 1.00415 0.97553 1.23560 0.97141 0.95783 0.95065 1.22606 0.95934 0.98810 0.98092 1.22635 0.94979 0.98796 0.98953 1.23506 0.95213 0.95522 1.00653 1.21679 1.01714 0.95771 1.10165 0.89675 0.86676 0.83643 0.74403 0.75737 0.92584 0.92908 0.91378 0.92291 0.91350 0.91111 0.86810 0.91528 0.91015 0.92701 0.91486 0.90737 0.91107 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.36 10.60 21.84 0.23 -39.13 16 2 C 0.04 1.74 5.28 85.29 0.45 2.19 16 3 Si 0.99 35.72 29.58 68.60 2.03 37.75 16 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 5 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 6 H -0.27 -9.22 7.11 99.48 0.71 -8.52 16 7 C -0.48 -24.86 9.14 23.52 0.22 -24.64 16 8 H 0.08 4.18 7.89 -2.91 -0.02 4.15 16 9 C 0.11 6.01 5.64 -21.11 -0.12 5.89 16 10 C -0.30 -15.25 9.85 22.60 0.22 -15.03 16 11 C 0.11 5.67 11.10 84.27 0.94 6.61 16 12 N -0.58 -31.40 7.86 -194.27 -1.53 -32.93 16 13 C 0.35 17.88 7.42 132.77 0.98 18.87 16 14 N -0.66 -27.06 5.40 -322.37 -1.74 -28.80 16 15 C 0.69 27.64 8.52 179.05 1.53 29.17 16 16 O -0.58 -29.05 14.60 -3.96 -0.06 -29.11 16 17 N -0.73 -20.29 5.36 -478.53 -2.57 -22.86 16 18 C 0.17 4.35 5.48 86.38 0.47 4.82 16 19 C -0.09 -1.52 1.00 -48.77 -0.05 -1.57 16 20 C -0.11 -1.76 5.78 32.84 0.19 -1.57 16 21 C -0.12 -1.41 6.26 32.84 0.21 -1.20 16 22 C -0.10 -1.13 5.19 -7.38 -0.04 -1.17 16 23 C -0.12 -1.47 6.21 32.14 0.20 -1.27 16 24 C -0.12 -1.86 5.57 32.15 0.18 -1.68 16 25 C -0.11 -1.64 6.13 33.36 0.20 -1.43 16 26 C -0.27 -14.04 8.66 23.00 0.20 -13.84 16 27 H 0.29 12.58 8.29 -92.71 -0.77 11.81 16 28 H 0.12 5.33 8.06 -2.91 -0.02 5.31 16 29 H 0.15 6.34 8.06 -2.91 -0.02 6.32 16 30 H 0.42 13.84 8.72 -92.70 -0.81 13.03 16 31 H 0.41 8.81 8.13 -92.71 -0.75 8.06 16 32 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.00 7.80 -2.39 -0.02 0.98 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.78 7.83 -2.39 -0.02 0.76 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.07 0.81 7.83 -2.39 -0.02 0.79 16 41 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.07 1.03 7.77 -2.39 -0.02 1.01 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.13 6.91 5.89 -2.91 -0.02 6.89 16 Total: -1.00 -69.12 361.51 1.60 -67.52 By element: Atomic # 1 Polarization: 43.97 SS G_CDS: -0.55 Total: 43.42 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 5.78 Total: 4.14 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -5.60 Total: -123.73 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.06 Total: -29.11 kcal Atomic # 14 Polarization: 35.72 SS G_CDS: 2.03 Total: 37.75 kcal Total: -69.12 1.60 -67.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.102 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds