Wall clock time and date at job start Tue Mar 31 2020 11:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86800 * 119.99990 * 2 1 4 4 H 1.48503 * 109.47056 * 269.99625 * 3 2 1 5 5 H 1.48497 * 109.47256 * 29.99986 * 3 2 1 6 6 H 1.48504 * 109.47444 * 149.99984 * 3 2 1 7 7 C 1.40034 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00188 * 183.48905 * 7 2 1 9 9 C 1.41545 * 119.99591 * 3.49256 * 7 2 1 10 10 C 1.41163 * 120.99966 * 326.40833 * 9 7 2 11 11 C 1.36594 * 119.13009 * 180.02562 * 10 9 7 12 12 N 1.32072 * 121.25421 * 359.72269 * 11 10 9 13 13 C 1.32491 * 122.23334 * 0.56740 * 12 11 10 14 14 N 1.39457 * 119.65081 * 179.70860 * 13 12 11 15 15 C 1.34770 * 120.00302 * 197.66776 * 14 13 12 16 16 O 1.21580 * 119.99729 * 5.68167 * 15 14 13 17 17 N 1.34769 * 120.00387 * 185.68633 * 15 14 13 18 18 C 1.46886 * 120.50557 * 355.05084 * 17 15 14 19 19 C 1.53311 * 108.78318 * 235.53731 * 18 17 15 20 20 C 1.52758 * 109.15449 * 307.48629 * 19 18 17 21 21 C 1.53406 * 113.51735 * 286.45578 * 20 19 18 22 22 C 1.53849 * 86.98088 * 270.67720 * 21 20 19 23 23 C 1.53427 * 113.47468 * 188.63499 * 20 19 18 24 24 C 1.52750 * 113.02884 * 57.60683 * 20 19 18 25 25 C 1.46889 * 120.50996 * 175.03375 * 17 15 14 26 26 C 1.38644 * 120.70217 * 359.43679 * 13 12 11 27 27 H 0.97001 * 120.00332 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.43480 * 359.97438 * 10 9 7 29 29 H 1.07995 * 119.37024 * 179.97438 * 11 10 9 30 30 H 0.96999 * 119.99764 * 17.66381 * 14 13 12 31 31 H 1.08998 * 109.58892 * 115.74528 * 18 17 15 32 32 H 1.09000 * 109.70236 * 355.39444 * 18 17 15 33 33 H 1.08995 * 109.52163 * 67.38119 * 19 18 17 34 34 H 1.08991 * 109.52452 * 187.57986 * 19 18 17 35 35 H 1.08998 * 113.62990 * 25.20509 * 21 20 19 36 36 H 1.08994 * 113.62578 * 156.15297 * 21 20 19 37 37 H 1.08997 * 113.60596 * 220.27417 * 22 21 20 38 38 H 1.09001 * 113.67616 * 89.41711 * 22 21 20 39 39 H 1.08999 * 113.63065 * 203.88469 * 23 20 19 40 40 H 1.09003 * 113.63142 * 334.75230 * 23 20 19 41 41 H 1.08997 * 109.52588 * 182.47983 * 24 20 19 42 42 H 1.09003 * 109.57506 * 62.31971 * 24 20 19 43 43 H 1.09003 * 109.58988 * 244.25126 * 25 17 15 44 44 H 1.09009 * 109.58792 * 4.67539 * 25 17 15 45 45 H 1.07993 * 120.66534 * 180.24911 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0860 -1.2135 0.0575 9 6 1.3018 -2.4374 -0.0736 10 6 0.0319 -2.5821 0.5256 11 6 -0.6152 -3.7813 0.4311 12 7 -0.0775 -4.8012 -0.2131 13 6 1.1130 -4.7245 -0.7895 14 7 1.6323 -5.8371 -1.4509 15 6 2.9499 -5.9033 -1.7260 16 8 3.7021 -5.0443 -1.3081 17 7 3.4339 -6.9216 -2.4644 18 6 2.5557 -8.0218 -2.8837 19 6 3.1626 -9.3467 -2.4077 20 6 4.6135 -9.4311 -2.8781 21 6 4.7548 -9.7032 -4.3812 22 6 4.7301 -11.2008 -4.0297 23 6 5.2547 -10.8042 -2.6389 24 6 5.4699 -8.2658 -2.3863 25 6 4.8475 -6.9480 -2.8625 26 6 1.8457 -3.5483 -0.7470 27 1 -0.4851 0.8400 -0.0004 28 1 -0.4218 -1.7557 1.0526 29 1 -1.5867 -3.8965 0.8885 30 1 1.0450 -6.5633 -1.7129 31 1 2.4712 -8.0281 -3.9704 32 1 1.5679 -7.8926 -2.4412 33 1 3.1295 -9.3923 -1.3192 34 1 2.5952 -10.1782 -2.8255 35 1 3.8951 -9.3776 -4.9669 36 1 5.7042 -9.3679 -4.7985 37 1 5.4356 -11.7967 -4.6086 38 1 3.7283 -11.6299 -4.0123 39 1 6.3424 -10.7733 -2.5746 40 1 4.7980 -11.3635 -1.8223 41 1 6.4782 -8.3591 -2.7894 42 1 5.5105 -8.2767 -1.2970 43 1 4.9229 -6.8795 -3.9478 44 1 5.3721 -6.1095 -2.4041 45 1 2.8142 -3.4852 -1.2204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871732306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:30 Heat of formation + Delta-G solvation = 33.779046 kcal Electronic energy + Delta-G solvation = -26224.443448 eV Core-core repulsion = 22628.592727 eV Total energy + Delta-G solvation = -3595.850721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.93256 -39.68747 -38.00761 -35.74393 -34.56231 -33.54237 -31.36384 -30.71860 -30.51346 -28.29194 -26.15523 -25.82525 -24.71217 -23.68797 -22.41251 -21.60617 -21.05284 -19.73047 -18.54925 -17.92347 -17.33724 -16.10979 -15.80012 -15.60602 -15.37269 -14.93917 -14.67530 -14.33078 -14.23619 -14.08337 -13.77471 -13.67856 -13.06616 -12.92372 -12.72052 -12.36942 -12.31416 -12.26091 -11.92301 -11.49366 -11.47054 -11.39213 -11.38075 -11.14495 -10.97951 -10.56853 -10.45374 -10.38174 -10.06195 -9.99461 -9.68156 -9.33478 -9.09268 -8.51652 -8.01775 -7.81743 -6.98050 -6.60580 -4.50989 2.71569 2.82240 2.86335 3.09842 3.15469 3.23732 3.67886 3.97006 4.06806 4.23639 4.30700 4.35185 4.57272 4.75240 4.78577 4.94433 5.03756 5.16640 5.26127 5.34541 5.39094 5.45721 5.48984 5.62386 5.63587 5.69170 5.71016 5.73615 5.85117 5.89956 5.94727 5.97815 6.19913 6.24281 6.47368 6.63507 6.74443 7.01677 7.11097 7.18268 7.33165 7.55288 7.65096 8.06160 8.15274 8.29048 8.63854 8.83667 8.89627 8.99920 9.57895 10.25878 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025780 B = 0.002878 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.833187 B = 9726.587503 C =10532.140980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.453 4.453 8 H 0.080 0.920 9 C 0.136 3.864 10 C -0.215 4.215 11 C 0.100 3.900 12 N -0.599 5.599 13 C 0.346 3.654 14 N -0.664 5.664 15 C 0.708 3.292 16 O -0.560 6.560 17 N -0.628 5.628 18 C 0.112 3.888 19 C -0.110 4.110 20 C -0.079 4.079 21 C -0.132 4.132 22 C -0.142 4.142 23 C -0.133 4.133 24 C -0.119 4.119 25 C 0.132 3.868 26 C -0.265 4.265 27 H 0.279 0.721 28 H 0.135 0.865 29 H 0.124 0.876 30 H 0.396 0.604 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 -17.788 -7.895 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.127 3.873 10 C -0.238 4.238 11 C -0.051 4.051 12 N -0.319 5.319 13 C 0.120 3.880 14 N -0.313 5.313 15 C 0.409 3.591 16 O -0.435 6.435 17 N -0.367 5.367 18 C -0.012 4.012 19 C -0.148 4.148 20 C -0.079 4.079 21 C -0.169 4.169 22 C -0.179 4.179 23 C -0.170 4.170 24 C -0.157 4.157 25 C 0.009 3.991 26 C -0.290 4.290 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.141 0.859 30 H 0.233 0.767 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.899 -17.789 -7.655 20.558 hybrid contribution 0.299 1.037 -0.150 1.090 sum 7.198 -16.751 -7.805 19.833 Atomic orbital electron populations 1.69718 1.07409 1.28930 1.37186 1.25930 0.94946 1.01320 0.92219 0.86150 0.80242 0.80131 0.79194 1.19469 1.20232 1.18527 1.19564 0.94855 0.89669 1.44423 0.90161 1.17852 0.91299 0.91711 0.86406 1.22166 0.98763 0.97797 1.05106 1.21417 0.97944 0.89244 0.96524 1.66538 1.13209 1.33892 1.18291 1.17669 0.91410 0.84778 0.94098 1.42406 1.07032 1.21943 1.59912 1.15675 0.82074 0.82100 0.79212 1.90871 1.57054 1.39624 1.55974 1.47220 1.10557 1.22552 1.56361 1.21595 0.93383 0.86250 0.99952 1.21688 0.94364 0.97130 1.01661 1.21526 0.95348 0.94796 0.96210 1.22953 1.02166 0.96097 0.95712 1.22835 1.01304 0.96589 0.97171 1.22948 1.00454 0.96239 0.97385 1.21883 0.98269 0.93920 1.01652 1.21407 0.80051 0.98491 0.99166 1.22446 1.04598 0.92858 1.09084 0.90994 0.84731 0.85879 0.76697 0.91246 0.90296 0.91052 0.90572 0.91423 0.90082 0.91753 0.90295 0.90141 0.91565 0.90774 0.91352 0.91849 0.88605 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.08 10.64 55.55 0.59 -20.49 16 2 C 0.07 1.87 5.43 -17.35 -0.09 1.77 16 3 Si 0.92 19.34 29.56 -169.99 -5.02 14.31 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.45 -12.57 9.11 -37.65 -0.34 -12.91 16 8 H 0.08 2.19 7.85 -52.49 -0.41 1.78 16 9 C 0.14 3.83 5.58 -106.55 -0.59 3.23 16 10 C -0.21 -5.74 8.72 -39.07 -0.34 -6.08 16 11 C 0.10 2.44 11.10 -18.04 -0.20 2.24 16 12 N -0.60 -14.67 10.36 -12.76 -0.13 -14.80 16 13 C 0.35 8.48 7.52 -154.68 -1.16 7.32 16 14 N -0.66 -13.07 5.33 -15.87 -0.08 -13.15 16 15 C 0.71 13.51 8.14 -86.93 -0.71 12.81 16 16 O -0.56 -12.93 12.52 5.30 0.07 -12.87 16 17 N -0.63 -8.71 2.94 -178.41 -0.52 -9.24 16 18 C 0.11 1.15 6.26 -3.67 -0.02 1.12 16 19 C -0.11 -0.95 5.19 -26.69 -0.14 -1.09 16 20 C -0.08 -0.64 0.75 -154.33 -0.12 -0.76 16 21 C -0.13 -0.94 6.88 -26.08 -0.18 -1.11 16 22 C -0.14 -0.91 7.73 -25.85 -0.20 -1.11 16 23 C -0.13 -0.95 7.22 -26.07 -0.19 -1.14 16 24 C -0.12 -1.13 5.25 -26.70 -0.14 -1.27 16 25 C 0.13 1.58 6.31 -3.67 -0.02 1.55 16 26 C -0.26 -7.16 8.63 -38.45 -0.33 -7.49 16 27 H 0.28 6.65 8.29 -40.82 -0.34 6.31 16 28 H 0.14 3.64 6.19 -52.49 -0.32 3.32 16 29 H 0.12 2.61 8.06 -52.49 -0.42 2.18 16 30 H 0.40 6.49 6.28 -40.82 -0.26 6.23 16 31 H 0.07 0.62 7.44 -51.93 -0.39 0.23 16 32 H 0.08 0.80 5.59 -51.93 -0.29 0.51 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.53 7.30 -51.93 -0.38 0.15 16 35 H 0.07 0.48 7.35 -51.93 -0.38 0.10 16 36 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.48 7.61 -51.93 -0.39 0.09 16 39 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 40 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 41 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 44 H 0.10 1.35 6.98 -51.92 -0.36 0.99 16 45 H 0.14 3.90 5.29 -52.55 -0.28 3.62 16 LS Contribution 351.61 15.07 5.30 5.30 Total: -1.00 -31.57 351.61 -10.99 -42.56 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -6.39 Total: 11.30 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -4.78 Total: -2.92 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.15 Total: -57.68 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.07 Total: -12.87 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.57 -10.99 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.338 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds