Wall clock time and date at job start Tue Mar 31 2020 11:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86800 * 119.99990 * 2 1 4 4 H 1.48503 * 109.47056 * 269.99625 * 3 2 1 5 5 H 1.48497 * 109.47256 * 29.99986 * 3 2 1 6 6 H 1.48504 * 109.47444 * 149.99984 * 3 2 1 7 7 C 1.40034 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00188 * 183.48905 * 7 2 1 9 9 C 1.41545 * 119.99591 * 3.49256 * 7 2 1 10 10 C 1.41163 * 120.99966 * 326.40833 * 9 7 2 11 11 C 1.36594 * 119.13009 * 180.02562 * 10 9 7 12 12 N 1.32072 * 121.25421 * 359.72269 * 11 10 9 13 13 C 1.32491 * 122.23334 * 0.56740 * 12 11 10 14 14 N 1.39457 * 119.65081 * 179.70860 * 13 12 11 15 15 C 1.34770 * 120.00302 * 197.66776 * 14 13 12 16 16 O 1.21580 * 119.99729 * 5.68167 * 15 14 13 17 17 N 1.34769 * 120.00387 * 185.68633 * 15 14 13 18 18 C 1.46886 * 120.50557 * 355.05084 * 17 15 14 19 19 C 1.53311 * 108.78318 * 235.53731 * 18 17 15 20 20 C 1.52758 * 109.15449 * 307.48629 * 19 18 17 21 21 C 1.53406 * 113.51735 * 286.45578 * 20 19 18 22 22 C 1.53849 * 86.98088 * 270.67720 * 21 20 19 23 23 C 1.53427 * 113.47468 * 188.63499 * 20 19 18 24 24 C 1.52750 * 113.02884 * 57.60683 * 20 19 18 25 25 C 1.46889 * 120.50996 * 175.03375 * 17 15 14 26 26 C 1.38644 * 120.70217 * 359.43679 * 13 12 11 27 27 H 0.97001 * 120.00332 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.43480 * 359.97438 * 10 9 7 29 29 H 1.07995 * 119.37024 * 179.97438 * 11 10 9 30 30 H 0.96999 * 119.99764 * 17.66381 * 14 13 12 31 31 H 1.08998 * 109.58892 * 115.74528 * 18 17 15 32 32 H 1.09000 * 109.70236 * 355.39444 * 18 17 15 33 33 H 1.08995 * 109.52163 * 67.38119 * 19 18 17 34 34 H 1.08991 * 109.52452 * 187.57986 * 19 18 17 35 35 H 1.08998 * 113.62990 * 25.20509 * 21 20 19 36 36 H 1.08994 * 113.62578 * 156.15297 * 21 20 19 37 37 H 1.08997 * 113.60596 * 220.27417 * 22 21 20 38 38 H 1.09001 * 113.67616 * 89.41711 * 22 21 20 39 39 H 1.08999 * 113.63065 * 203.88469 * 23 20 19 40 40 H 1.09003 * 113.63142 * 334.75230 * 23 20 19 41 41 H 1.08997 * 109.52588 * 182.47983 * 24 20 19 42 42 H 1.09003 * 109.57506 * 62.31971 * 24 20 19 43 43 H 1.09003 * 109.58988 * 244.25126 * 25 17 15 44 44 H 1.09009 * 109.58792 * 4.67539 * 25 17 15 45 45 H 1.07993 * 120.66534 * 180.24911 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2127 0.0005 8 1 3.0860 -1.2135 0.0575 9 6 1.3018 -2.4374 -0.0736 10 6 0.0319 -2.5821 0.5256 11 6 -0.6152 -3.7813 0.4311 12 7 -0.0775 -4.8012 -0.2131 13 6 1.1130 -4.7245 -0.7895 14 7 1.6323 -5.8371 -1.4509 15 6 2.9499 -5.9033 -1.7260 16 8 3.7021 -5.0443 -1.3081 17 7 3.4339 -6.9216 -2.4644 18 6 2.5557 -8.0218 -2.8837 19 6 3.1626 -9.3467 -2.4077 20 6 4.6135 -9.4311 -2.8781 21 6 4.7548 -9.7032 -4.3812 22 6 4.7301 -11.2008 -4.0297 23 6 5.2547 -10.8042 -2.6389 24 6 5.4699 -8.2658 -2.3863 25 6 4.8475 -6.9480 -2.8625 26 6 1.8457 -3.5483 -0.7470 27 1 -0.4851 0.8400 -0.0004 28 1 -0.4218 -1.7557 1.0526 29 1 -1.5867 -3.8965 0.8885 30 1 1.0450 -6.5633 -1.7129 31 1 2.4712 -8.0281 -3.9704 32 1 1.5679 -7.8926 -2.4412 33 1 3.1295 -9.3923 -1.3192 34 1 2.5952 -10.1782 -2.8255 35 1 3.8951 -9.3776 -4.9669 36 1 5.7042 -9.3679 -4.7985 37 1 5.4356 -11.7967 -4.6086 38 1 3.7283 -11.6299 -4.0123 39 1 6.3424 -10.7733 -2.5746 40 1 4.7980 -11.3635 -1.8223 41 1 6.4782 -8.3591 -2.7894 42 1 5.5105 -8.2767 -1.2970 43 1 4.9229 -6.8795 -3.9478 44 1 5.3721 -6.1095 -2.4041 45 1 2.8142 -3.4852 -1.2204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871732306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:29 Heat of formation + Delta-G solvation = 16.286040 kcal Electronic energy + Delta-G solvation = -26225.202002 eV Core-core repulsion = 22628.592727 eV Total energy + Delta-G solvation = -3596.609275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.09495 -40.89150 -39.73444 -36.89659 -36.39154 -35.36728 -32.57510 -32.35206 -31.64423 -30.04063 -27.87418 -26.77748 -25.66635 -24.56687 -23.93043 -23.31746 -22.39183 -21.00025 -19.97632 -19.46324 -18.41377 -17.83440 -17.31144 -16.72831 -16.41934 -16.33489 -16.23689 -15.89041 -15.45017 -15.23006 -14.98008 -14.83845 -14.71362 -14.20898 -14.15695 -14.03234 -13.37115 -13.29826 -13.11012 -12.94669 -12.87461 -12.73830 -12.34087 -12.17386 -12.12783 -12.02466 -11.86798 -11.50320 -11.24496 -11.17632 -11.04984 -10.85320 -10.73544 -10.04263 -9.87223 -9.68038 -8.87717 -8.55604 -6.60417 0.82810 0.90262 1.36894 1.41920 1.50474 1.51561 2.06854 2.20491 2.74253 2.80199 3.56049 3.65082 3.67748 3.68882 3.99794 4.03310 4.11089 4.13755 4.24443 4.46102 4.46199 4.55142 4.66747 4.76527 4.78659 4.79274 4.89976 4.95280 4.96508 5.01189 5.06291 5.08186 5.11906 5.12959 5.21646 5.27733 5.30677 5.45300 5.56155 5.58409 5.61510 5.68817 5.82609 6.05676 6.20749 6.51609 6.76557 6.80723 6.85685 7.44767 7.60440 8.32092 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025780 B = 0.002878 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.833187 B = 9726.587503 C =10532.140980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.993 3.007 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.262 1.262 7 C -0.491 4.491 8 H 0.069 0.931 9 C 0.109 3.891 10 C -0.236 4.236 11 C 0.105 3.895 12 N -0.595 5.595 13 C 0.354 3.646 14 N -0.655 5.655 15 C 0.701 3.299 16 O -0.606 6.606 17 N -0.615 5.615 18 C 0.105 3.895 19 C -0.105 4.105 20 C -0.084 4.084 21 C -0.128 4.128 22 C -0.135 4.135 23 C -0.131 4.131 24 C -0.111 4.111 25 C 0.127 3.873 26 C -0.295 4.295 27 H 0.290 0.710 28 H 0.127 0.873 29 H 0.161 0.839 30 H 0.414 0.586 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.802 -19.262 -9.229 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.181 4.181 3 Si 0.813 3.187 4 H -0.188 1.188 5 H -0.182 1.182 6 H -0.186 1.186 7 C -0.522 4.522 8 H 0.087 0.913 9 C 0.100 3.900 10 C -0.260 4.260 11 C -0.046 4.046 12 N -0.316 5.316 13 C 0.127 3.873 14 N -0.306 5.306 15 C 0.403 3.597 16 O -0.485 6.485 17 N -0.352 5.352 18 C -0.018 4.018 19 C -0.143 4.143 20 C -0.084 4.084 21 C -0.166 4.166 22 C -0.172 4.172 23 C -0.169 4.169 24 C -0.150 4.150 25 C 0.005 3.995 26 C -0.320 4.320 27 H 0.101 0.899 28 H 0.145 0.855 29 H 0.178 0.822 30 H 0.254 0.746 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.690 -19.354 -9.029 22.380 hybrid contribution 0.371 1.376 0.227 1.443 sum 7.061 -17.978 -8.802 21.226 Atomic orbital electron populations 1.69752 1.08609 1.30594 1.36295 1.26811 0.95896 1.04358 0.91002 0.85051 0.78784 0.75390 0.79494 1.18821 1.18229 1.18595 1.19757 0.94615 0.91075 1.46774 0.91301 1.18231 0.92373 0.92396 0.86963 1.22137 0.98823 0.98697 1.06320 1.21942 0.98889 0.88333 0.95405 1.66754 1.12938 1.33571 1.18367 1.17820 0.90951 0.85422 0.93127 1.42230 1.07687 1.21192 1.59451 1.15938 0.81484 0.82790 0.79538 1.90841 1.57969 1.41848 1.57882 1.47316 1.11783 1.21796 1.54349 1.21930 0.92807 0.85609 1.01405 1.21665 0.95013 0.96728 1.00886 1.21562 0.94755 0.94624 0.97438 1.22954 1.02614 0.96561 0.94436 1.22821 1.01840 0.96230 0.96346 1.22947 1.00659 0.95247 0.98031 1.21839 0.99511 0.93140 1.00461 1.21594 0.78761 0.98949 1.00210 1.22437 1.04707 0.94184 1.10666 0.89862 0.85512 0.82214 0.74647 0.88882 0.90153 0.92509 0.88051 0.91069 0.89611 0.91020 0.89624 0.89798 0.91708 0.88840 0.93344 0.89601 0.91509 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.68 10.64 21.84 0.23 -43.45 16 2 C 0.03 1.78 5.43 85.29 0.46 2.24 16 3 Si 0.99 39.87 29.56 68.60 2.03 41.90 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 5 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.49 -28.50 9.11 23.52 0.21 -28.28 16 8 H 0.07 3.99 7.85 -2.91 -0.02 3.97 16 9 C 0.11 6.41 5.58 -21.11 -0.12 6.29 16 10 C -0.24 -12.95 8.72 22.60 0.20 -12.75 16 11 C 0.11 5.14 11.10 84.27 0.94 6.08 16 12 N -0.60 -29.01 10.36 -194.27 -2.01 -31.02 16 13 C 0.35 17.69 7.52 132.76 1.00 18.69 16 14 N -0.65 -25.94 5.33 -322.38 -1.72 -27.66 16 15 C 0.70 27.42 8.14 179.06 1.46 28.88 16 16 O -0.61 -29.59 12.52 -3.97 -0.05 -29.64 16 17 N -0.62 -16.82 2.94 -836.65 -2.46 -19.28 16 18 C 0.10 1.93 6.26 86.41 0.54 2.47 16 19 C -0.10 -1.56 5.19 30.62 0.16 -1.40 16 20 C -0.08 -1.16 0.75 -52.07 -0.04 -1.20 16 21 C -0.13 -1.40 6.88 31.02 0.21 -1.18 16 22 C -0.14 -1.28 7.73 31.16 0.24 -1.04 16 23 C -0.13 -1.54 7.22 31.02 0.22 -1.32 16 24 C -0.11 -2.00 5.25 30.62 0.16 -1.84 16 25 C 0.13 3.00 6.31 86.41 0.55 3.54 16 26 C -0.29 -16.71 8.63 23.00 0.20 -16.51 16 27 H 0.29 13.74 8.29 -92.71 -0.77 12.97 16 28 H 0.13 7.05 6.19 -2.91 -0.02 7.03 16 29 H 0.16 6.48 8.06 -2.91 -0.02 6.46 16 30 H 0.41 13.17 6.28 -92.71 -0.58 12.59 16 31 H 0.09 1.36 7.44 -2.39 -0.02 1.34 16 32 H 0.08 1.46 5.59 -2.39 -0.01 1.45 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 1.05 7.30 -2.39 -0.02 1.03 16 35 H 0.07 0.75 7.35 -2.39 -0.02 0.73 16 36 H 0.09 0.88 8.07 -2.39 -0.02 0.86 16 37 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.09 0.72 7.61 -2.39 -0.02 0.70 16 39 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 40 H 0.06 0.79 8.09 -2.39 -0.02 0.77 16 41 H 0.09 1.33 8.12 -2.39 -0.02 1.31 16 42 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 1.66 8.07 -2.39 -0.02 1.64 16 44 H 0.07 1.98 6.98 -2.38 -0.02 1.97 16 45 H 0.13 7.42 5.29 -3.82 -0.02 7.40 16 Total: -1.00 -71.71 351.61 2.84 -68.87 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: 0.43 Total: 37.63 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 6.39 Total: 2.65 kcal Atomic # 7 Polarization: -115.44 SS G_CDS: -5.96 Total: -121.40 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.05 Total: -29.64 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -71.71 2.84 -68.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.159 kcal (2) G-P(sol) polarization free energy of solvation -71.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds