Wall clock time and date at job start Tue Mar 31 2020 11:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 119.99936 * 2 1 4 4 H 1.48497 * 109.46932 * 239.99624 * 3 2 1 5 5 H 1.48495 * 109.47127 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47320 * 119.99965 * 3 2 1 7 7 C 1.40033 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00113 * 192.09828 * 7 2 1 9 9 C 1.41547 * 120.00122 * 12.10883 * 7 2 1 10 10 C 1.41156 * 120.99715 * 201.11629 * 9 7 2 11 11 C 1.36592 * 119.12781 * 180.02562 * 10 9 7 12 12 N 1.32063 * 121.25835 * 359.72637 * 11 10 9 13 13 C 1.32489 * 122.22718 * 0.56700 * 12 11 10 14 14 N 1.39471 * 119.64759 * 179.70672 * 13 12 11 15 15 C 1.34775 * 119.99762 * 6.01591 * 14 13 12 16 16 O 1.21577 * 120.00148 * 355.45054 * 15 14 13 17 17 N 1.34774 * 119.99776 * 175.18402 * 15 14 13 18 18 C 1.47237 * 125.40498 * 359.96390 * 17 15 14 19 19 C 1.53837 * 105.39055 * 161.32146 * 18 17 15 20 20 H 1.09002 * 107.93961 * 277.46395 * 19 18 17 21 21 C 1.49570 * 113.00415 * 159.02781 * 19 18 17 22 22 C 1.51490 * 115.49568 * 277.83530 * 21 19 18 23 23 C 1.52678 * 110.81517 * 313.23028 * 22 21 19 24 24 C 1.52843 * 108.58197 * 60.04048 * 23 22 21 25 25 C 1.52857 * 103.89289 * 31.74818 * 19 18 17 26 26 H 1.08996 * 111.25034 * 208.75783 * 25 19 18 27 27 C 1.46946 * 125.40487 * 180.27337 * 17 15 14 28 28 C 1.38645 * 120.70476 * 359.43277 * 13 12 11 29 29 H 0.96998 * 120.00160 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.43678 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.37158 * 179.97438 * 11 10 9 32 32 H 0.97001 * 120.00118 * 186.00977 * 14 13 12 33 33 H 1.08994 * 110.24525 * 280.44975 * 18 17 15 34 34 H 1.08992 * 110.23992 * 42.44248 * 18 17 15 35 35 H 1.09000 * 108.27990 * 39.38837 * 21 19 18 36 36 H 1.09000 * 108.28278 * 156.45807 * 21 19 18 37 37 H 1.09002 * 109.21062 * 73.57196 * 22 21 19 38 38 H 1.08996 * 109.20989 * 192.88778 * 22 21 19 39 39 H 1.09004 * 109.61856 * 179.76586 * 23 22 21 40 40 H 1.09000 * 109.61697 * 300.30903 * 23 22 21 41 41 H 1.08994 * 109.44090 * 174.81321 * 24 23 22 42 42 H 1.09000 * 109.43820 * 54.93203 * 24 23 22 43 43 H 1.08996 * 109.87787 * 297.85957 * 27 17 15 44 44 H 1.08999 * 109.87906 * 58.86517 * 27 17 15 45 45 H 1.08003 * 120.66110 * 180.24605 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6963 -1.2124 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6964 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0697 -1.2230 0.1966 9 6 1.3235 -2.4250 -0.2561 10 6 1.8596 -3.6638 0.1570 11 6 1.1674 -4.8104 -0.1110 12 7 0.0079 -4.7792 -0.7424 13 6 -0.5401 -3.6467 -1.1579 14 7 -1.7645 -3.6768 -1.8251 15 6 -2.4421 -4.8363 -1.9377 16 8 -1.9490 -5.8706 -1.5312 17 7 -3.6687 -4.8484 -2.4961 18 6 -4.3791 -3.6700 -3.0201 19 6 -5.4679 -4.2303 -3.9513 20 1 -5.0095 -4.4351 -4.9188 21 6 -6.5883 -3.2677 -4.1861 22 6 -7.6502 -3.2270 -3.1064 23 6 -8.0793 -4.6388 -2.7140 24 6 -6.8567 -5.3913 -2.1894 25 6 -5.8394 -5.5705 -3.3168 26 1 -6.1879 -6.2798 -4.0674 27 6 -4.5119 -6.0388 -2.6729 28 6 0.0880 -2.4315 -0.9315 29 1 -0.4850 0.8400 -0.0004 30 1 2.8051 -3.7045 0.6775 31 1 1.5741 -5.7603 0.2029 32 1 -2.1283 -2.8632 -2.2079 33 1 -4.8306 -3.1076 -2.2030 34 1 -3.6937 -3.0356 -3.5820 35 1 -6.1650 -2.2683 -4.2868 36 1 -7.0717 -3.5286 -5.1276 37 1 -7.2509 -2.7169 -2.2297 38 1 -8.5166 -2.6786 -3.4759 39 1 -8.8394 -4.5869 -1.9344 40 1 -8.4804 -5.1550 -3.5862 41 1 -7.1640 -6.3694 -1.8194 42 1 -6.4021 -4.8235 -1.3776 43 1 -4.0132 -6.7522 -3.3288 44 1 -4.7092 -6.5003 -1.7052 45 1 -0.3613 -1.5085 -1.2671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871733028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:09 Heat of formation + Delta-G solvation = -0.766628 kcal Electronic energy + Delta-G solvation = -26252.795534 eV Core-core repulsion = 22655.446800 eV Total energy + Delta-G solvation = -3597.348734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.64958 -39.15482 -37.74524 -35.20330 -34.27895 -33.72488 -32.10286 -30.98878 -30.40534 -28.43223 -27.39013 -25.99227 -24.62769 -22.56043 -22.08748 -21.83367 -21.01425 -19.42132 -18.85788 -17.84094 -17.53050 -16.45617 -15.75435 -15.30911 -15.17708 -14.70590 -14.66311 -14.19078 -14.14448 -14.01380 -13.75772 -13.37961 -13.21421 -12.83455 -12.74166 -12.59065 -12.42052 -12.05892 -11.93995 -11.68943 -11.42125 -11.40034 -11.27870 -11.16797 -10.87134 -10.57151 -10.29835 -10.27961 -10.19068 -10.07746 -9.73600 -9.51129 -9.36417 -8.34248 -7.95485 -7.69081 -6.95714 -6.73010 -4.61270 2.73478 2.84165 2.95593 3.00519 3.03711 3.28432 3.84650 3.88823 4.19940 4.26825 4.37232 4.52293 4.72371 4.80731 4.88590 4.92130 5.08652 5.20506 5.27610 5.29440 5.45845 5.50814 5.61324 5.73577 5.74938 5.76054 5.80521 5.83942 5.93161 5.97738 6.02372 6.08227 6.13755 6.25595 6.43731 6.64939 6.71265 6.85939 6.97213 7.19711 7.37222 7.49754 7.53609 7.90069 8.12663 8.40398 8.50632 8.76153 8.78127 9.22889 9.78769 10.08052 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.003288 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.207297 B = 8512.990478 C = 9867.553491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.450 4.450 8 H 0.081 0.919 9 C 0.140 3.860 10 C -0.286 4.286 11 C 0.119 3.881 12 N -0.555 5.555 13 C 0.354 3.646 14 N -0.665 5.665 15 C 0.709 3.291 16 O -0.530 6.530 17 N -0.641 5.641 18 C 0.105 3.895 19 C -0.089 4.089 20 H 0.073 0.927 21 C -0.103 4.103 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.089 4.089 26 H 0.091 0.909 27 C 0.132 3.868 28 C -0.250 4.250 29 H 0.281 0.719 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.403 0.597 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.780 -2.018 -8.239 17.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.481 4.481 8 H 0.099 0.901 9 C 0.132 3.868 10 C -0.310 4.310 11 C -0.034 4.034 12 N -0.274 5.274 13 C 0.128 3.872 14 N -0.313 5.313 15 C 0.411 3.589 16 O -0.401 6.401 17 N -0.383 5.383 18 C -0.019 4.019 19 C -0.108 4.108 20 H 0.091 0.909 21 C -0.141 4.141 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.152 4.152 25 C -0.108 4.108 26 H 0.109 0.891 27 C 0.009 3.991 28 C -0.276 4.276 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.139 0.861 32 H 0.238 0.762 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.002 -3.471 -8.052 18.246 hybrid contribution 0.622 2.099 0.011 2.189 sum -15.379 -1.372 -8.041 17.409 Atomic orbital electron populations 1.69735 1.07620 1.29169 1.35178 1.25978 0.94848 1.01526 0.91990 0.86254 0.80009 0.79746 0.80064 1.18768 1.20255 1.18891 1.19582 0.96362 0.90214 1.41926 0.90095 1.17568 0.90469 0.92254 0.86530 1.21641 1.03603 0.94083 1.11662 1.21461 0.90294 0.96683 0.94988 1.67201 1.13273 1.27550 1.19359 1.18010 0.84975 0.90821 0.93399 1.42571 1.20577 1.09883 1.58267 1.15606 0.79281 0.84716 0.79321 1.91011 1.66894 1.30766 1.51467 1.47562 1.16184 1.09063 1.65468 1.22067 0.93896 0.89066 0.96837 1.20870 0.95646 0.95060 0.99201 0.90900 1.20348 0.95419 0.99225 0.99148 1.21164 0.98216 0.97174 0.99064 1.21416 0.97417 0.95903 1.00779 1.21593 0.95308 1.00673 0.97585 1.21858 0.94683 0.96725 0.97486 0.89050 1.21892 0.89129 0.87616 1.00497 1.21766 1.00731 0.95542 1.09546 0.90787 0.88100 0.86089 0.76248 0.91742 0.91298 0.91566 0.92038 0.91986 0.91959 0.91955 0.91964 0.91701 0.91455 0.92066 0.91499 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.47 10.50 55.55 0.58 -18.88 16 2 C 0.07 1.81 5.31 -17.34 -0.09 1.72 16 3 Si 0.92 17.95 29.58 -169.99 -5.03 12.92 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.45 -11.65 9.15 -37.65 -0.34 -11.99 16 8 H 0.08 2.00 7.88 -52.48 -0.41 1.58 16 9 C 0.14 3.75 5.65 -106.56 -0.60 3.15 16 10 C -0.29 -7.19 9.85 -39.07 -0.38 -7.58 16 11 C 0.12 2.98 11.10 -18.05 -0.20 2.78 16 12 N -0.55 -14.86 7.86 -12.75 -0.10 -14.96 16 13 C 0.35 8.98 7.42 -154.67 -1.15 7.84 16 14 N -0.67 -14.11 5.34 -15.86 -0.08 -14.19 16 15 C 0.71 14.90 8.44 -86.92 -0.73 14.17 16 16 O -0.53 -13.42 14.92 5.30 0.08 -13.34 16 17 N -0.64 -10.02 3.33 -176.84 -0.59 -10.60 16 18 C 0.10 1.23 5.72 -3.20 -0.02 1.21 16 19 C -0.09 -0.80 2.61 -91.95 -0.24 -1.04 16 20 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 21 C -0.10 -0.76 5.25 -29.19 -0.15 -0.92 16 22 C -0.12 -0.86 5.92 -27.66 -0.16 -1.03 16 23 C -0.12 -0.85 5.94 -26.98 -0.16 -1.01 16 24 C -0.11 -0.99 4.78 -26.86 -0.13 -1.12 16 25 C -0.09 -0.81 3.32 -89.79 -0.30 -1.11 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 27 C 0.13 1.72 6.31 -2.85 -0.02 1.70 16 28 C -0.25 -6.50 8.67 -38.46 -0.33 -6.84 16 29 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 30 H 0.10 2.32 8.06 -52.48 -0.42 1.89 16 31 H 0.12 2.65 8.06 -52.49 -0.42 2.23 16 32 H 0.40 7.20 7.25 -40.82 -0.30 6.90 16 33 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.07 0.77 7.45 -51.93 -0.39 0.38 16 35 H 0.07 0.47 8.00 -51.93 -0.42 0.06 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.70 7.94 -51.93 -0.41 0.29 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.92 7.71 -51.93 -0.40 0.52 16 45 H 0.14 3.56 5.81 -52.48 -0.30 3.25 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -32.09 356.11 -11.63 -43.71 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -6.83 Total: 10.04 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -5.02 Total: -0.06 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.19 Total: -58.64 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.09 -11.63 -43.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871733028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.945 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds