Wall clock time and date at job start Tue Mar 31 2020 11:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 119.99936 * 2 1 4 4 H 1.48497 * 109.46932 * 239.99624 * 3 2 1 5 5 H 1.48495 * 109.47127 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47320 * 119.99965 * 3 2 1 7 7 C 1.40033 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00113 * 192.09828 * 7 2 1 9 9 C 1.41547 * 120.00122 * 12.10883 * 7 2 1 10 10 C 1.41156 * 120.99715 * 201.11629 * 9 7 2 11 11 C 1.36592 * 119.12781 * 180.02562 * 10 9 7 12 12 N 1.32063 * 121.25835 * 359.72637 * 11 10 9 13 13 C 1.32489 * 122.22718 * 0.56700 * 12 11 10 14 14 N 1.39471 * 119.64759 * 179.70672 * 13 12 11 15 15 C 1.34775 * 119.99762 * 6.01591 * 14 13 12 16 16 O 1.21577 * 120.00148 * 355.45054 * 15 14 13 17 17 N 1.34774 * 119.99776 * 175.18402 * 15 14 13 18 18 C 1.47237 * 125.40498 * 359.96390 * 17 15 14 19 19 C 1.53837 * 105.39055 * 161.32146 * 18 17 15 20 20 H 1.09002 * 107.93961 * 277.46395 * 19 18 17 21 21 C 1.49570 * 113.00415 * 159.02781 * 19 18 17 22 22 C 1.51490 * 115.49568 * 277.83530 * 21 19 18 23 23 C 1.52678 * 110.81517 * 313.23028 * 22 21 19 24 24 C 1.52843 * 108.58197 * 60.04048 * 23 22 21 25 25 C 1.52857 * 103.89289 * 31.74818 * 19 18 17 26 26 H 1.08996 * 111.25034 * 208.75783 * 25 19 18 27 27 C 1.46946 * 125.40487 * 180.27337 * 17 15 14 28 28 C 1.38645 * 120.70476 * 359.43277 * 13 12 11 29 29 H 0.96998 * 120.00160 * 0.02562 * 1 2 3 30 30 H 1.08004 * 120.43678 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.37158 * 179.97438 * 11 10 9 32 32 H 0.97001 * 120.00118 * 186.00977 * 14 13 12 33 33 H 1.08994 * 110.24525 * 280.44975 * 18 17 15 34 34 H 1.08992 * 110.23992 * 42.44248 * 18 17 15 35 35 H 1.09000 * 108.27990 * 39.38837 * 21 19 18 36 36 H 1.09000 * 108.28278 * 156.45807 * 21 19 18 37 37 H 1.09002 * 109.21062 * 73.57196 * 22 21 19 38 38 H 1.08996 * 109.20989 * 192.88778 * 22 21 19 39 39 H 1.09004 * 109.61856 * 179.76586 * 23 22 21 40 40 H 1.09000 * 109.61697 * 300.30903 * 23 22 21 41 41 H 1.08994 * 109.44090 * 174.81321 * 24 23 22 42 42 H 1.09000 * 109.43820 * 54.93203 * 24 23 22 43 43 H 1.08996 * 109.87787 * 297.85957 * 27 17 15 44 44 H 1.08999 * 109.87906 * 58.86517 * 27 17 15 45 45 H 1.08003 * 120.66110 * 180.24605 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6963 -1.2124 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6964 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0697 -1.2230 0.1966 9 6 1.3235 -2.4250 -0.2561 10 6 1.8596 -3.6638 0.1570 11 6 1.1674 -4.8104 -0.1110 12 7 0.0079 -4.7792 -0.7424 13 6 -0.5401 -3.6467 -1.1579 14 7 -1.7645 -3.6768 -1.8251 15 6 -2.4421 -4.8363 -1.9377 16 8 -1.9490 -5.8706 -1.5312 17 7 -3.6687 -4.8484 -2.4961 18 6 -4.3791 -3.6700 -3.0201 19 6 -5.4679 -4.2303 -3.9513 20 1 -5.0095 -4.4351 -4.9188 21 6 -6.5883 -3.2677 -4.1861 22 6 -7.6502 -3.2270 -3.1064 23 6 -8.0793 -4.6388 -2.7140 24 6 -6.8567 -5.3913 -2.1894 25 6 -5.8394 -5.5705 -3.3168 26 1 -6.1879 -6.2798 -4.0674 27 6 -4.5119 -6.0388 -2.6729 28 6 0.0880 -2.4315 -0.9315 29 1 -0.4850 0.8400 -0.0004 30 1 2.8051 -3.7045 0.6775 31 1 1.5741 -5.7603 0.2029 32 1 -2.1283 -2.8632 -2.2079 33 1 -4.8306 -3.1076 -2.2030 34 1 -3.6937 -3.0356 -3.5820 35 1 -6.1650 -2.2683 -4.2868 36 1 -7.0717 -3.5286 -5.1276 37 1 -7.2509 -2.7169 -2.2297 38 1 -8.5166 -2.6786 -3.4759 39 1 -8.8394 -4.5869 -1.9344 40 1 -8.4804 -5.1550 -3.5862 41 1 -7.1640 -6.3694 -1.8194 42 1 -6.4021 -4.8235 -1.3776 43 1 -4.0132 -6.7522 -3.3288 44 1 -4.7092 -6.5003 -1.7052 45 1 -0.3613 -1.5085 -1.2671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871733028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:08 Heat of formation + Delta-G solvation = -18.186772 kcal Electronic energy + Delta-G solvation = -26253.550928 eV Core-core repulsion = 22655.446800 eV Total energy + Delta-G solvation = -3598.104128 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86290 -40.66180 -39.40827 -36.33502 -36.07115 -35.53958 -32.87934 -32.46905 -31.94673 -30.15583 -28.33930 -27.93702 -25.76384 -23.82914 -23.42357 -23.16680 -22.29325 -21.02381 -19.77299 -19.29756 -19.24693 -17.59423 -17.40941 -17.03401 -16.44172 -16.12258 -16.01558 -15.66166 -15.32224 -15.20346 -14.91173 -14.74034 -14.48538 -14.30358 -14.09445 -14.01812 -13.80889 -13.17058 -13.05393 -12.86486 -12.70686 -12.67814 -12.47353 -12.15859 -12.03901 -12.00777 -11.92190 -11.56411 -11.35606 -11.19884 -11.14934 -10.96269 -10.85714 -9.95529 -9.67965 -9.63907 -8.83490 -8.58952 -6.58870 0.82434 1.01453 1.41540 1.49724 1.53253 1.59887 2.19587 2.21435 2.83088 2.89517 3.45452 3.47464 3.70719 3.77579 4.08603 4.10825 4.15596 4.26168 4.38298 4.41715 4.51254 4.55702 4.63122 4.68485 4.74241 4.82849 4.85824 4.88583 4.92212 5.05531 5.09148 5.12143 5.19236 5.24505 5.26341 5.32633 5.35478 5.44758 5.50336 5.53531 5.61844 5.64266 5.87273 5.97955 6.22917 6.55022 6.77929 6.82200 6.86292 7.53884 7.88878 8.26351 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.003288 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.207297 B = 8512.990478 C = 9867.553491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.036 3.964 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.477 4.477 8 H 0.085 0.915 9 C 0.111 3.889 10 C -0.298 4.298 11 C 0.113 3.887 12 N -0.584 5.584 13 C 0.349 3.651 14 N -0.659 5.659 15 C 0.703 3.297 16 O -0.581 6.581 17 N -0.634 5.634 18 C 0.096 3.904 19 C -0.079 4.079 20 H 0.080 0.920 21 C -0.101 4.101 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.113 4.113 25 C -0.074 4.074 26 H 0.118 0.882 27 C 0.124 3.876 28 C -0.266 4.266 29 H 0.292 0.708 30 H 0.117 0.883 31 H 0.147 0.853 32 H 0.416 0.584 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.043 0.957 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.299 -0.500 -9.513 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.181 4.181 3 Si 0.812 3.188 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.507 4.507 8 H 0.104 0.896 9 C 0.103 3.897 10 C -0.322 4.322 11 C -0.040 4.040 12 N -0.304 5.304 13 C 0.122 3.878 14 N -0.308 5.308 15 C 0.405 3.595 16 O -0.456 6.456 17 N -0.374 5.374 18 C -0.026 4.026 19 C -0.098 4.098 20 H 0.098 0.902 21 C -0.139 4.139 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.151 4.151 25 C -0.093 4.093 26 H 0.136 0.864 27 C 0.001 3.999 28 C -0.292 4.292 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.164 0.836 32 H 0.253 0.747 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.595 -1.941 -9.359 20.023 hybrid contribution 1.030 1.621 0.430 1.968 sum -16.564 -0.320 -8.929 18.820 Atomic orbital electron populations 1.69768 1.09026 1.30887 1.34064 1.26887 0.95680 1.04723 0.90785 0.85095 0.78649 0.74936 0.80102 1.18338 1.18866 1.18464 1.19904 0.96834 0.91056 1.42956 0.89646 1.18016 0.91206 0.93396 0.87108 1.21833 1.04402 0.93824 1.12178 1.21903 0.89934 0.97831 0.94359 1.67312 1.14231 1.28279 1.20609 1.18230 0.85993 0.90454 0.93105 1.42453 1.19602 1.10832 1.57870 1.15797 0.80547 0.83797 0.79377 1.90959 1.68654 1.32218 1.53754 1.47556 1.14591 1.11519 1.63687 1.22379 0.94663 0.87952 0.97594 1.20877 0.95410 0.95056 0.98469 0.90164 1.20340 0.94765 0.98813 0.99960 1.21186 0.98687 0.97257 0.98585 1.21396 0.96542 0.95668 1.01436 1.21572 0.95811 1.00956 0.96744 1.21879 0.92299 0.97254 0.97885 0.86426 1.22158 0.90668 0.86859 1.00202 1.21751 1.01214 0.95616 1.10664 0.89655 0.86485 0.83590 0.74687 0.91570 0.90637 0.91189 0.90153 0.93349 0.90515 0.91546 0.90467 0.91149 0.93805 0.92544 0.92826 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.81 10.50 21.84 0.23 -39.58 16 2 C 0.04 1.72 5.31 85.29 0.45 2.17 16 3 Si 0.99 35.79 29.58 68.60 2.03 37.82 16 4 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 5 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 6 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.48 -24.93 9.15 23.52 0.22 -24.72 16 8 H 0.09 4.24 7.88 -2.91 -0.02 4.21 16 9 C 0.11 6.09 5.65 -21.12 -0.12 5.98 16 10 C -0.30 -15.34 9.85 22.60 0.22 -15.12 16 11 C 0.11 5.76 11.10 84.27 0.94 6.69 16 12 N -0.58 -32.30 7.86 -194.26 -1.53 -33.83 16 13 C 0.35 18.32 7.42 132.76 0.98 19.30 16 14 N -0.66 -28.78 5.34 -322.37 -1.72 -30.50 16 15 C 0.70 30.50 8.44 179.06 1.51 32.02 16 16 O -0.58 -30.59 14.92 -3.96 -0.06 -30.65 16 17 N -0.63 -20.03 3.33 -831.66 -2.77 -22.80 16 18 C 0.10 2.18 5.72 86.52 0.50 2.68 16 19 C -0.08 -1.25 2.61 -11.66 -0.03 -1.28 16 20 H 0.08 1.20 8.13 -2.39 -0.02 1.19 16 21 C -0.10 -1.18 5.25 29.00 0.15 -1.02 16 22 C -0.12 -1.42 5.92 29.99 0.18 -1.25 16 23 C -0.11 -1.32 5.94 30.43 0.18 -1.14 16 24 C -0.11 -1.79 4.78 30.51 0.15 -1.64 16 25 C -0.07 -1.22 3.32 -10.26 -0.03 -1.26 16 26 H 0.12 1.41 8.14 -2.39 -0.02 1.40 16 27 C 0.12 3.22 6.31 86.91 0.55 3.77 16 28 C -0.27 -14.28 8.67 23.00 0.20 -14.08 16 29 H 0.29 12.76 8.29 -92.71 -0.77 12.00 16 30 H 0.12 5.44 8.06 -2.91 -0.02 5.42 16 31 H 0.15 6.46 8.06 -2.91 -0.02 6.44 16 32 H 0.42 15.22 7.25 -92.71 -0.67 14.54 16 33 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 34 H 0.08 1.62 7.45 -2.39 -0.02 1.60 16 35 H 0.07 0.80 8.00 -2.39 -0.02 0.78 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.04 0.90 7.94 -2.39 -0.02 0.88 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.05 1.53 7.71 -2.39 -0.02 1.51 16 45 H 0.14 7.19 5.81 -2.91 -0.02 7.17 16 Total: -1.00 -71.50 356.11 2.54 -68.95 By element: Atomic # 1 Polarization: 39.18 SS G_CDS: 0.32 Total: 39.50 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 6.04 Total: 11.10 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -5.79 Total: -126.72 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.06 Total: -30.65 kcal Atomic # 14 Polarization: 35.79 SS G_CDS: 2.03 Total: 37.82 kcal Total: -71.50 2.54 -68.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871733028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.767 kcal (2) G-P(sol) polarization free energy of solvation -71.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds