Wall clock time and date at job start Tue Mar 31 2020 11:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 120.00104 * 2 1 4 4 H 1.48496 * 109.47407 * 274.98665 * 3 2 1 5 5 H 1.48504 * 109.47187 * 34.98797 * 3 2 1 6 6 H 1.48502 * 109.47276 * 154.98195 * 3 2 1 7 7 C 1.40028 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00550 * 173.67272 * 7 2 1 9 9 C 1.41336 * 119.99773 * 353.67212 * 7 2 1 10 10 C 1.40609 * 119.78515 * 186.37032 * 9 7 2 11 11 C 1.38318 * 119.12795 * 179.97438 * 10 9 7 12 12 C 1.38691 * 118.66699 * 359.72775 * 11 10 9 13 13 C 1.39641 * 119.49916 * 0.51396 * 12 11 10 14 14 N 1.39245 * 119.57596 * 179.75402 * 13 12 11 15 15 C 1.34778 * 119.99978 * 341.15947 * 14 13 12 16 16 O 1.21580 * 119.99779 * 354.20925 * 15 14 13 17 17 N 1.34772 * 120.00094 * 174.20622 * 15 14 13 18 18 C 1.46501 * 120.00067 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47147 * 180.02562 * 18 17 15 20 20 H 1.08996 * 110.56775 * 307.68092 * 19 18 17 21 21 C 1.54983 * 110.51267 * 70.36188 * 19 18 17 22 22 C 1.54921 * 102.82371 * 156.21356 * 21 19 18 23 23 C 1.54386 * 104.22244 * 322.27523 * 22 21 19 24 24 C 1.53482 * 106.39915 * 23.55648 * 23 22 21 25 25 C 1.52561 * 121.09133 * 144.07422 * 24 23 22 26 26 C 1.52692 * 121.04717 * 215.75262 * 24 23 22 27 27 N 1.31931 * 120.84807 * 359.47657 * 13 12 11 28 28 H 0.97005 * 119.99883 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.43689 * 359.97271 * 10 9 7 30 30 H 1.08000 * 120.66411 * 180.02562 * 11 10 9 31 31 H 1.08007 * 120.24874 * 180.26468 * 12 11 10 32 32 H 0.97003 * 120.00506 * 161.16814 * 14 13 12 33 33 H 0.97004 * 120.00228 * 0.02562 * 17 15 14 34 34 H 1.09004 * 109.47092 * 60.00617 * 18 17 15 35 35 H 1.09004 * 109.47363 * 300.00289 * 18 17 15 36 36 H 1.09005 * 110.74660 * 37.87931 * 21 19 18 37 37 H 1.09002 * 110.89782 * 274.61963 * 21 19 18 38 38 H 1.09006 * 110.48547 * 203.59559 * 22 21 19 39 39 H 1.08993 * 110.59870 * 81.01745 * 22 21 19 40 40 H 1.09001 * 110.07259 * 264.32230 * 23 22 21 41 41 H 1.09000 * 110.11671 * 142.80921 * 23 22 21 42 42 H 1.09001 * 117.50701 * 217.88692 * 25 24 23 43 43 H 1.08993 * 117.50617 * 2.93080 * 25 24 23 44 44 H 1.09003 * 117.53116 * 142.08845 * 26 24 23 45 45 H 1.08999 * 117.50310 * 356.97258 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3836 2.1073 -1.3947 5 1 1.4956 2.6199 0.8028 6 1 3.5877 1.4120 0.5921 7 6 2.0076 -1.2127 -0.0005 8 1 3.0826 -1.2156 -0.1036 9 6 1.3073 -2.4330 0.1338 10 6 2.0213 -3.6369 0.2677 11 6 1.3222 -4.8232 0.3988 12 6 -0.0641 -4.7820 0.3993 13 6 -0.7156 -3.5550 0.2576 14 7 -2.1074 -3.5124 0.2527 15 6 -2.8150 -4.6319 0.0026 16 8 -2.2415 -5.6537 -0.3220 17 7 -4.1581 -4.6188 0.1124 18 6 -4.9272 -5.8358 -0.1590 19 6 -6.4179 -5.5511 0.0359 20 1 -6.5973 -5.1011 1.0122 21 6 -6.9468 -4.6296 -1.0923 22 6 -8.4628 -4.9477 -1.1138 23 6 -8.5353 -6.4674 -0.8513 24 6 -7.2386 -6.8433 -0.1213 25 6 -7.2286 -7.9129 0.9665 26 6 -6.5493 -8.1812 -0.3789 27 7 -0.0294 -2.4351 0.1338 28 1 -0.4850 0.8401 0.0004 29 1 3.1013 -3.6354 0.2681 30 1 1.8455 -5.7622 0.5037 31 1 -0.6354 -5.6925 0.5045 32 1 -2.5677 -2.6770 0.4292 33 1 -4.6157 -3.8035 0.3711 34 1 -4.6148 -6.6235 0.5267 35 1 -4.7501 -6.1563 -1.1856 36 1 -6.4855 -4.8838 -2.0467 37 1 -6.7758 -3.5807 -0.8499 38 1 -8.8891 -4.7083 -2.0880 39 1 -8.9808 -4.3996 -0.3268 40 1 -8.6029 -7.0073 -1.7957 41 1 -9.3973 -6.6991 -0.2257 42 1 -6.5856 -7.7460 1.8307 43 1 -8.1648 -8.4324 1.1702 44 1 -5.4595 -8.1908 -0.3997 45 1 -7.0391 -8.8768 -1.0604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:54 Heat of formation + Delta-G solvation = 29.468896 kcal Electronic energy + Delta-G solvation = -25552.950256 eV Core-core repulsion = 21956.912632 eV Total energy + Delta-G solvation = -3596.037623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.26683 -39.51089 -37.79411 -34.98171 -34.24420 -34.00678 -33.19700 -30.41510 -30.18094 -28.75281 -26.31449 -25.42633 -24.23118 -22.70367 -21.89366 -21.52997 -20.70786 -20.26199 -18.88519 -17.87666 -17.31406 -16.61830 -15.94765 -15.53278 -15.22217 -14.99774 -14.84600 -14.49819 -14.31345 -14.05687 -13.94477 -13.32462 -12.98455 -12.87563 -12.74874 -12.36794 -12.06246 -11.93781 -11.68973 -11.37194 -11.25877 -11.14856 -11.05789 -10.97931 -10.85998 -10.83665 -10.64018 -10.45695 -10.10020 -9.84957 -9.79458 -9.27346 -9.05501 -8.83496 -7.99025 -7.64029 -7.01750 -6.39384 -4.46838 2.71425 2.96305 3.00756 3.10005 3.13615 3.27748 3.49426 3.74855 3.96970 4.12164 4.31436 4.53536 4.56470 4.70384 4.81787 4.85852 4.93638 5.00156 5.19013 5.27034 5.44703 5.50330 5.57075 5.61637 5.67323 5.72396 5.82656 5.83033 5.91827 5.94351 5.97378 5.99408 6.11747 6.19879 6.47491 6.58123 6.76670 6.85550 6.98459 7.13640 7.27431 7.55510 7.66216 7.94544 8.11074 8.20811 8.47791 8.73620 8.93608 9.09078 10.09085 10.34026 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.002670 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.194166 B =10484.515692 C =11608.193368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.072 3.928 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.437 4.437 8 H 0.085 0.915 9 C 0.280 3.720 10 C -0.291 4.291 11 C -0.049 4.049 12 C -0.312 4.312 13 C 0.374 3.626 14 N -0.659 5.659 15 C 0.706 3.294 16 O -0.571 6.571 17 N -0.747 5.747 18 C 0.148 3.852 19 C -0.069 4.069 20 H 0.085 0.915 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.087 4.087 24 C -0.122 4.122 25 C -0.170 4.170 26 C -0.172 4.172 27 N -0.509 5.509 28 H 0.270 0.730 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.403 0.597 33 H 0.394 0.606 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.976 -7.592 0.444 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.153 4.153 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.154 3.846 10 C -0.314 4.314 11 C -0.074 4.074 12 C -0.337 4.337 13 C 0.139 3.861 14 N -0.306 5.306 15 C 0.406 3.594 16 O -0.447 6.447 17 N -0.404 5.404 18 C 0.024 3.976 19 C -0.088 4.088 20 H 0.103 0.897 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.207 4.207 26 C -0.209 4.209 27 N -0.228 5.228 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.238 0.762 33 H 0.228 0.772 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.102 -7.623 0.061 19.642 hybrid contribution 0.346 0.763 0.290 0.886 sum -17.756 -6.860 0.351 19.039 Atomic orbital electron populations 1.70128 1.07214 1.27388 1.29859 1.26030 0.94864 1.00966 0.93408 0.86337 0.80647 0.80997 0.78943 1.19600 1.20198 1.18513 1.19543 0.94607 0.89341 1.43389 0.89710 1.18172 0.86318 0.92052 0.88084 1.21702 0.98742 0.93761 1.17224 1.20809 0.93707 0.96534 0.96366 1.21626 0.94503 0.98141 1.19434 1.18212 0.81990 0.91317 0.94544 1.42262 1.05547 1.10745 1.72067 1.15771 0.81213 0.83915 0.78513 1.90835 1.68509 1.32079 1.53312 1.45107 1.04996 1.14423 1.75900 1.21232 0.88580 0.86347 1.01455 1.21703 0.92842 0.94445 0.99816 0.89722 1.22572 0.95256 0.99113 0.98638 1.22327 0.96591 0.95509 1.01599 1.21628 0.95124 0.96185 0.99506 1.21662 0.97730 0.89923 1.02977 1.22970 1.02661 1.02176 0.92924 1.23124 1.00611 0.97876 0.99313 1.68017 1.08402 1.24665 1.21754 0.91943 0.88281 0.88397 0.84988 0.76224 0.77219 0.91755 0.91421 0.90913 0.91221 0.91534 0.91549 0.91535 0.91666 0.88655 0.88860 0.87956 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.93 11.49 55.55 0.64 -18.30 16 2 C 0.07 1.82 5.49 -17.35 -0.10 1.73 16 3 Si 0.91 18.59 29.56 -169.99 -5.03 13.57 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.44 -11.80 9.13 -37.73 -0.34 -12.14 16 8 H 0.08 2.15 7.85 -52.49 -0.41 1.73 16 9 C 0.28 7.86 6.54 -85.00 -0.56 7.30 16 10 C -0.29 -7.48 9.83 -38.66 -0.38 -7.86 16 11 C -0.05 -1.20 10.15 -39.38 -0.40 -1.60 16 12 C -0.31 -7.87 8.83 -38.89 -0.34 -8.21 16 13 C 0.37 9.52 7.51 -154.99 -1.16 8.36 16 14 N -0.66 -13.63 5.42 -15.79 -0.09 -13.72 16 15 C 0.71 13.40 8.40 -86.92 -0.73 12.67 16 16 O -0.57 -12.82 13.14 5.30 0.07 -12.75 16 17 N -0.75 -10.07 5.45 -65.22 -0.36 -10.42 16 18 C 0.15 1.74 3.89 -4.04 -0.02 1.72 16 19 C -0.07 -0.61 2.76 -89.11 -0.25 -0.86 16 20 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 21 C -0.12 -0.98 6.21 -24.67 -0.15 -1.13 16 22 C -0.12 -0.87 6.84 -24.99 -0.17 -1.04 16 23 C -0.09 -0.63 6.55 -25.75 -0.17 -0.80 16 24 C -0.12 -1.01 2.41 -154.18 -0.37 -1.38 16 25 C -0.17 -1.35 10.25 -26.91 -0.28 -1.62 16 26 C -0.17 -1.47 9.57 -26.84 -0.26 -1.72 16 27 N -0.51 -14.14 7.92 -10.26 -0.08 -14.22 16 28 H 0.27 6.36 8.29 -40.82 -0.34 6.02 16 29 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 30 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.13 3.31 5.33 -52.50 -0.28 3.03 16 32 H 0.40 7.42 8.84 -40.82 -0.36 7.05 16 33 H 0.39 4.25 8.47 -40.82 -0.35 3.90 16 34 H 0.06 0.81 7.23 -51.93 -0.38 0.44 16 35 H 0.07 0.88 7.98 -51.93 -0.41 0.46 16 36 H 0.07 0.67 7.96 -51.93 -0.41 0.26 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.98 6.43 -51.93 -0.33 0.65 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -31.86 366.42 -11.71 -43.57 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -6.72 Total: 13.34 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -5.67 Total: -6.59 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.12 Total: -56.66 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.86 -11.71 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.035 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds