Wall clock time and date at job start Tue Mar 31 2020 11:06:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30741 * 1
3 3 Si 1.86797 * 120.00104 * 2 1
4 4 H 1.48496 * 109.47407 * 274.98665 * 3 2 1
5 5 H 1.48504 * 109.47187 * 34.98797 * 3 2 1
6 6 H 1.48502 * 109.47276 * 154.98195 * 3 2 1
7 7 C 1.40028 * 120.00066 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00550 * 173.67272 * 7 2 1
9 9 C 1.41336 * 119.99773 * 353.67212 * 7 2 1
10 10 C 1.40609 * 119.78515 * 186.37032 * 9 7 2
11 11 C 1.38318 * 119.12795 * 179.97438 * 10 9 7
12 12 C 1.38691 * 118.66699 * 359.72775 * 11 10 9
13 13 C 1.39641 * 119.49916 * 0.51396 * 12 11 10
14 14 N 1.39245 * 119.57596 * 179.75402 * 13 12 11
15 15 C 1.34778 * 119.99978 * 341.15947 * 14 13 12
16 16 O 1.21580 * 119.99779 * 354.20925 * 15 14 13
17 17 N 1.34772 * 120.00094 * 174.20622 * 15 14 13
18 18 C 1.46501 * 120.00067 * 180.02562 * 17 15 14
19 19 C 1.53001 * 109.47147 * 180.02562 * 18 17 15
20 20 H 1.08996 * 110.56775 * 307.68092 * 19 18 17
21 21 C 1.54983 * 110.51267 * 70.36188 * 19 18 17
22 22 C 1.54921 * 102.82371 * 156.21356 * 21 19 18
23 23 C 1.54386 * 104.22244 * 322.27523 * 22 21 19
24 24 C 1.53482 * 106.39915 * 23.55648 * 23 22 21
25 25 C 1.52561 * 121.09133 * 144.07422 * 24 23 22
26 26 C 1.52692 * 121.04717 * 215.75262 * 24 23 22
27 27 N 1.31931 * 120.84807 * 359.47657 * 13 12 11
28 28 H 0.97005 * 119.99883 * 359.97438 * 1 2 3
29 29 H 1.07999 * 120.43689 * 359.97271 * 10 9 7
30 30 H 1.08000 * 120.66411 * 180.02562 * 11 10 9
31 31 H 1.08007 * 120.24874 * 180.26468 * 12 11 10
32 32 H 0.97003 * 120.00506 * 161.16814 * 14 13 12
33 33 H 0.97004 * 120.00228 * 0.02562 * 17 15 14
34 34 H 1.09004 * 109.47092 * 60.00617 * 18 17 15
35 35 H 1.09004 * 109.47363 * 300.00289 * 18 17 15
36 36 H 1.09005 * 110.74660 * 37.87931 * 21 19 18
37 37 H 1.09002 * 110.89782 * 274.61963 * 21 19 18
38 38 H 1.09006 * 110.48547 * 203.59559 * 22 21 19
39 39 H 1.08993 * 110.59870 * 81.01745 * 22 21 19
40 40 H 1.09001 * 110.07259 * 264.32230 * 23 22 21
41 41 H 1.09000 * 110.11671 * 142.80921 * 23 22 21
42 42 H 1.09001 * 117.50701 * 217.88692 * 25 24 23
43 43 H 1.08993 * 117.50617 * 2.93080 * 25 24 23
44 44 H 1.09003 * 117.53116 * 142.08845 * 26 24 23
45 45 H 1.08999 * 117.50310 * 356.97258 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2414 1.6177 0.0000
4 1 2.3836 2.1073 -1.3947
5 1 1.4956 2.6199 0.8028
6 1 3.5877 1.4120 0.5921
7 6 2.0076 -1.2127 -0.0005
8 1 3.0826 -1.2156 -0.1036
9 6 1.3073 -2.4330 0.1338
10 6 2.0213 -3.6369 0.2677
11 6 1.3222 -4.8232 0.3988
12 6 -0.0641 -4.7820 0.3993
13 6 -0.7156 -3.5550 0.2576
14 7 -2.1074 -3.5124 0.2527
15 6 -2.8150 -4.6319 0.0026
16 8 -2.2415 -5.6537 -0.3220
17 7 -4.1581 -4.6188 0.1124
18 6 -4.9272 -5.8358 -0.1590
19 6 -6.4179 -5.5511 0.0359
20 1 -6.5973 -5.1011 1.0122
21 6 -6.9468 -4.6296 -1.0923
22 6 -8.4628 -4.9477 -1.1138
23 6 -8.5353 -6.4674 -0.8513
24 6 -7.2386 -6.8433 -0.1213
25 6 -7.2286 -7.9129 0.9665
26 6 -6.5493 -8.1812 -0.3789
27 7 -0.0294 -2.4351 0.1338
28 1 -0.4850 0.8401 0.0004
29 1 3.1013 -3.6354 0.2681
30 1 1.8455 -5.7622 0.5037
31 1 -0.6354 -5.6925 0.5045
32 1 -2.5677 -2.6770 0.4292
33 1 -4.6157 -3.8035 0.3711
34 1 -4.6148 -6.6235 0.5267
35 1 -4.7501 -6.1563 -1.1856
36 1 -6.4855 -4.8838 -2.0467
37 1 -6.7758 -3.5807 -0.8499
38 1 -8.8891 -4.7083 -2.0880
39 1 -8.9808 -4.3996 -0.3268
40 1 -8.6029 -7.0073 -1.7957
41 1 -9.3973 -6.6991 -0.2257
42 1 -6.5856 -7.7460 1.8307
43 1 -8.1648 -8.4324 1.1702
44 1 -5.4595 -8.1908 -0.3997
45 1 -7.0391 -8.8768 -1.0604
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000881142621.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:06:54
Heat of formation + Delta-G solvation = 29.468896 kcal
Electronic energy + Delta-G solvation = -25552.950256 eV
Core-core repulsion = 21956.912632 eV
Total energy + Delta-G solvation = -3596.037623 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.26683 -39.51089 -37.79411 -34.98171 -34.24420 -34.00678 -33.19700 -30.41510
-30.18094 -28.75281 -26.31449 -25.42633 -24.23118 -22.70367 -21.89366 -21.52997
-20.70786 -20.26199 -18.88519 -17.87666 -17.31406 -16.61830 -15.94765 -15.53278
-15.22217 -14.99774 -14.84600 -14.49819 -14.31345 -14.05687 -13.94477 -13.32462
-12.98455 -12.87563 -12.74874 -12.36794 -12.06246 -11.93781 -11.68973 -11.37194
-11.25877 -11.14856 -11.05789 -10.97931 -10.85998 -10.83665 -10.64018 -10.45695
-10.10020 -9.84957 -9.79458 -9.27346 -9.05501 -8.83496 -7.99025 -7.64029
-7.01750 -6.39384 -4.46838 2.71425 2.96305 3.00756 3.10005 3.13615
3.27748 3.49426 3.74855 3.96970 4.12164 4.31436 4.53536 4.56470
4.70384 4.81787 4.85852 4.93638 5.00156 5.19013 5.27034 5.44703
5.50330 5.57075 5.61637 5.67323 5.72396 5.82656 5.83033 5.91827
5.94351 5.97378 5.99408 6.11747 6.19879 6.47491 6.58123 6.76670
6.85550 6.98459 7.13640 7.27431 7.55510 7.66216 7.94544 8.11074
8.20811 8.47791 8.73620 8.93608 9.09078 10.09085 10.34026
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.021382 B = 0.002670 C = 0.002412
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1309.194166 B =10484.515692 C =11608.193368
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.724 5.724
2 C 0.072 3.928
3 Si 0.906 3.094
4 H -0.271 1.271
5 H -0.277 1.277
6 H -0.261 1.261
7 C -0.437 4.437
8 H 0.085 0.915
9 C 0.280 3.720
10 C -0.291 4.291
11 C -0.049 4.049
12 C -0.312 4.312
13 C 0.374 3.626
14 N -0.659 5.659
15 C 0.706 3.294
16 O -0.571 6.571
17 N -0.747 5.747
18 C 0.148 3.852
19 C -0.069 4.069
20 H 0.085 0.915
21 C -0.118 4.118
22 C -0.123 4.123
23 C -0.087 4.087
24 C -0.122 4.122
25 C -0.170 4.170
26 C -0.172 4.172
27 N -0.509 5.509
28 H 0.270 0.730
29 H 0.099 0.901
30 H 0.098 0.902
31 H 0.133 0.867
32 H 0.403 0.597
33 H 0.394 0.606
34 H 0.064 0.936
35 H 0.068 0.932
36 H 0.072 0.928
37 H 0.069 0.931
38 H 0.066 0.934
39 H 0.066 0.934
40 H 0.066 0.934
41 H 0.065 0.935
42 H 0.095 0.905
43 H 0.093 0.907
44 H 0.102 0.898
45 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.976 -7.592 0.444 19.519
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.346 5.346
2 C -0.153 4.153
3 Si 0.731 3.269
4 H -0.196 1.196
5 H -0.202 1.202
6 H -0.185 1.185
7 C -0.469 4.469
8 H 0.103 0.897
9 C 0.154 3.846
10 C -0.314 4.314
11 C -0.074 4.074
12 C -0.337 4.337
13 C 0.139 3.861
14 N -0.306 5.306
15 C 0.406 3.594
16 O -0.447 6.447
17 N -0.404 5.404
18 C 0.024 3.976
19 C -0.088 4.088
20 H 0.103 0.897
21 C -0.156 4.156
22 C -0.160 4.160
23 C -0.124 4.124
24 C -0.123 4.123
25 C -0.207 4.207
26 C -0.209 4.209
27 N -0.228 5.228
28 H 0.081 0.919
29 H 0.117 0.883
30 H 0.116 0.884
31 H 0.150 0.850
32 H 0.238 0.762
33 H 0.228 0.772
34 H 0.082 0.918
35 H 0.086 0.914
36 H 0.091 0.909
37 H 0.088 0.912
38 H 0.085 0.915
39 H 0.085 0.915
40 H 0.085 0.915
41 H 0.083 0.917
42 H 0.113 0.887
43 H 0.111 0.889
44 H 0.120 0.880
45 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -18.102 -7.623 0.061 19.642
hybrid contribution 0.346 0.763 0.290 0.886
sum -17.756 -6.860 0.351 19.039
Atomic orbital electron populations
1.70128 1.07214 1.27388 1.29859 1.26030 0.94864 1.00966 0.93408
0.86337 0.80647 0.80997 0.78943 1.19600 1.20198 1.18513 1.19543
0.94607 0.89341 1.43389 0.89710 1.18172 0.86318 0.92052 0.88084
1.21702 0.98742 0.93761 1.17224 1.20809 0.93707 0.96534 0.96366
1.21626 0.94503 0.98141 1.19434 1.18212 0.81990 0.91317 0.94544
1.42262 1.05547 1.10745 1.72067 1.15771 0.81213 0.83915 0.78513
1.90835 1.68509 1.32079 1.53312 1.45107 1.04996 1.14423 1.75900
1.21232 0.88580 0.86347 1.01455 1.21703 0.92842 0.94445 0.99816
0.89722 1.22572 0.95256 0.99113 0.98638 1.22327 0.96591 0.95509
1.01599 1.21628 0.95124 0.96185 0.99506 1.21662 0.97730 0.89923
1.02977 1.22970 1.02661 1.02176 0.92924 1.23124 1.00611 0.97876
0.99313 1.68017 1.08402 1.24665 1.21754 0.91943 0.88281 0.88397
0.84988 0.76224 0.77219 0.91755 0.91421 0.90913 0.91221 0.91534
0.91549 0.91535 0.91666 0.88655 0.88860 0.87956 0.88793
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.72 -18.93 11.49 55.55 0.64 -18.30 16
2 C 0.07 1.82 5.49 -17.35 -0.10 1.73 16
3 Si 0.91 18.59 29.56 -169.99 -5.03 13.57 16
4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16
5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16
6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16
7 C -0.44 -11.80 9.13 -37.73 -0.34 -12.14 16
8 H 0.08 2.15 7.85 -52.49 -0.41 1.73 16
9 C 0.28 7.86 6.54 -85.00 -0.56 7.30 16
10 C -0.29 -7.48 9.83 -38.66 -0.38 -7.86 16
11 C -0.05 -1.20 10.15 -39.38 -0.40 -1.60 16
12 C -0.31 -7.87 8.83 -38.89 -0.34 -8.21 16
13 C 0.37 9.52 7.51 -154.99 -1.16 8.36 16
14 N -0.66 -13.63 5.42 -15.79 -0.09 -13.72 16
15 C 0.71 13.40 8.40 -86.92 -0.73 12.67 16
16 O -0.57 -12.82 13.14 5.30 0.07 -12.75 16
17 N -0.75 -10.07 5.45 -65.22 -0.36 -10.42 16
18 C 0.15 1.74 3.89 -4.04 -0.02 1.72 16
19 C -0.07 -0.61 2.76 -89.11 -0.25 -0.86 16
20 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
21 C -0.12 -0.98 6.21 -24.67 -0.15 -1.13 16
22 C -0.12 -0.87 6.84 -24.99 -0.17 -1.04 16
23 C -0.09 -0.63 6.55 -25.75 -0.17 -0.80 16
24 C -0.12 -1.01 2.41 -154.18 -0.37 -1.38 16
25 C -0.17 -1.35 10.25 -26.91 -0.28 -1.62 16
26 C -0.17 -1.47 9.57 -26.84 -0.26 -1.72 16
27 N -0.51 -14.14 7.92 -10.26 -0.08 -14.22 16
28 H 0.27 6.36 8.29 -40.82 -0.34 6.02 16
29 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16
30 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16
31 H 0.13 3.31 5.33 -52.50 -0.28 3.03 16
32 H 0.40 7.42 8.84 -40.82 -0.36 7.05 16
33 H 0.39 4.25 8.47 -40.82 -0.35 3.90 16
34 H 0.06 0.81 7.23 -51.93 -0.38 0.44 16
35 H 0.07 0.88 7.98 -51.93 -0.41 0.46 16
36 H 0.07 0.67 7.96 -51.93 -0.41 0.26 16
37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16
39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16
43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16
44 H 0.10 0.98 6.43 -51.93 -0.33 0.65 16
45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
LS Contribution 366.42 15.07 5.52 5.52
Total: -1.00 -31.86 366.42 -11.71 -43.57
By element:
Atomic # 1 Polarization: 20.06 SS G_CDS: -6.72 Total: 13.34 kcal
Atomic # 6 Polarization: -0.92 SS G_CDS: -5.67 Total: -6.59 kcal
Atomic # 7 Polarization: -56.77 SS G_CDS: 0.12 Total: -56.66 kcal
Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.75 kcal
Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -31.86 -11.71 -43.57 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000881142621.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.035 kcal
(2) G-P(sol) polarization free energy of solvation -31.857 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.178 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.709 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.566 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.469 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds