Wall clock time and date at job start Tue Mar 31 2020 11:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 120.00104 * 2 1 4 4 H 1.48496 * 109.47407 * 274.98665 * 3 2 1 5 5 H 1.48504 * 109.47187 * 34.98797 * 3 2 1 6 6 H 1.48502 * 109.47276 * 154.98195 * 3 2 1 7 7 C 1.40028 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00550 * 173.67272 * 7 2 1 9 9 C 1.41336 * 119.99773 * 353.67212 * 7 2 1 10 10 C 1.40609 * 119.78515 * 186.37032 * 9 7 2 11 11 C 1.38318 * 119.12795 * 179.97438 * 10 9 7 12 12 C 1.38691 * 118.66699 * 359.72775 * 11 10 9 13 13 C 1.39641 * 119.49916 * 0.51396 * 12 11 10 14 14 N 1.39245 * 119.57596 * 179.75402 * 13 12 11 15 15 C 1.34778 * 119.99978 * 341.15947 * 14 13 12 16 16 O 1.21580 * 119.99779 * 354.20925 * 15 14 13 17 17 N 1.34772 * 120.00094 * 174.20622 * 15 14 13 18 18 C 1.46501 * 120.00067 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.47147 * 180.02562 * 18 17 15 20 20 H 1.08996 * 110.56775 * 307.68092 * 19 18 17 21 21 C 1.54983 * 110.51267 * 70.36188 * 19 18 17 22 22 C 1.54921 * 102.82371 * 156.21356 * 21 19 18 23 23 C 1.54386 * 104.22244 * 322.27523 * 22 21 19 24 24 C 1.53482 * 106.39915 * 23.55648 * 23 22 21 25 25 C 1.52561 * 121.09133 * 144.07422 * 24 23 22 26 26 C 1.52692 * 121.04717 * 215.75262 * 24 23 22 27 27 N 1.31931 * 120.84807 * 359.47657 * 13 12 11 28 28 H 0.97005 * 119.99883 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.43689 * 359.97271 * 10 9 7 30 30 H 1.08000 * 120.66411 * 180.02562 * 11 10 9 31 31 H 1.08007 * 120.24874 * 180.26468 * 12 11 10 32 32 H 0.97003 * 120.00506 * 161.16814 * 14 13 12 33 33 H 0.97004 * 120.00228 * 0.02562 * 17 15 14 34 34 H 1.09004 * 109.47092 * 60.00617 * 18 17 15 35 35 H 1.09004 * 109.47363 * 300.00289 * 18 17 15 36 36 H 1.09005 * 110.74660 * 37.87931 * 21 19 18 37 37 H 1.09002 * 110.89782 * 274.61963 * 21 19 18 38 38 H 1.09006 * 110.48547 * 203.59559 * 22 21 19 39 39 H 1.08993 * 110.59870 * 81.01745 * 22 21 19 40 40 H 1.09001 * 110.07259 * 264.32230 * 23 22 21 41 41 H 1.09000 * 110.11671 * 142.80921 * 23 22 21 42 42 H 1.09001 * 117.50701 * 217.88692 * 25 24 23 43 43 H 1.08993 * 117.50617 * 2.93080 * 25 24 23 44 44 H 1.09003 * 117.53116 * 142.08845 * 26 24 23 45 45 H 1.08999 * 117.50310 * 356.97258 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3836 2.1073 -1.3947 5 1 1.4956 2.6199 0.8028 6 1 3.5877 1.4120 0.5921 7 6 2.0076 -1.2127 -0.0005 8 1 3.0826 -1.2156 -0.1036 9 6 1.3073 -2.4330 0.1338 10 6 2.0213 -3.6369 0.2677 11 6 1.3222 -4.8232 0.3988 12 6 -0.0641 -4.7820 0.3993 13 6 -0.7156 -3.5550 0.2576 14 7 -2.1074 -3.5124 0.2527 15 6 -2.8150 -4.6319 0.0026 16 8 -2.2415 -5.6537 -0.3220 17 7 -4.1581 -4.6188 0.1124 18 6 -4.9272 -5.8358 -0.1590 19 6 -6.4179 -5.5511 0.0359 20 1 -6.5973 -5.1011 1.0122 21 6 -6.9468 -4.6296 -1.0923 22 6 -8.4628 -4.9477 -1.1138 23 6 -8.5353 -6.4674 -0.8513 24 6 -7.2386 -6.8433 -0.1213 25 6 -7.2286 -7.9129 0.9665 26 6 -6.5493 -8.1812 -0.3789 27 7 -0.0294 -2.4351 0.1338 28 1 -0.4850 0.8401 0.0004 29 1 3.1013 -3.6354 0.2681 30 1 1.8455 -5.7622 0.5037 31 1 -0.6354 -5.6925 0.5045 32 1 -2.5677 -2.6770 0.4292 33 1 -4.6157 -3.8035 0.3711 34 1 -4.6148 -6.6235 0.5267 35 1 -4.7501 -6.1563 -1.1856 36 1 -6.4855 -4.8838 -2.0467 37 1 -6.7758 -3.5807 -0.8499 38 1 -8.8891 -4.7083 -2.0880 39 1 -8.9808 -4.3996 -0.3268 40 1 -8.6029 -7.0073 -1.7957 41 1 -9.3973 -6.6991 -0.2257 42 1 -6.5856 -7.7460 1.8307 43 1 -8.1648 -8.4324 1.1702 44 1 -5.4595 -8.1908 -0.3997 45 1 -7.0391 -8.8768 -1.0604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:53 Heat of formation + Delta-G solvation = 11.396631 kcal Electronic energy + Delta-G solvation = -25553.733928 eV Core-core repulsion = 21956.912632 eV Total energy + Delta-G solvation = -3596.821295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67299 -40.50564 -39.57769 -36.25495 -35.82986 -35.10001 -34.81081 -32.32939 -31.53382 -30.27707 -27.43808 -26.95784 -25.21615 -23.67188 -23.48069 -23.14970 -21.91879 -21.38099 -20.11013 -19.22832 -18.95859 -18.19952 -17.09934 -16.90606 -16.48167 -16.32968 -16.10261 -15.84759 -15.60717 -15.42656 -15.18007 -14.76546 -14.61066 -14.19621 -13.81343 -13.63316 -13.49117 -13.00627 -12.92650 -12.87919 -12.65218 -12.56751 -12.34701 -11.95477 -11.88424 -11.84129 -11.70338 -11.58442 -11.45660 -11.11263 -11.07052 -10.82994 -10.50123 -10.17486 -9.95537 -9.62807 -8.92605 -8.30468 -6.49300 0.82706 1.13006 1.43621 1.52966 1.55780 1.59241 2.11601 2.25480 2.83077 2.89422 3.15183 3.49164 3.65663 3.85329 3.92718 3.93474 4.16331 4.24323 4.32761 4.39563 4.43468 4.50594 4.64336 4.77393 4.81576 4.85297 4.88716 4.91897 4.94173 4.97101 5.00225 5.08199 5.12924 5.20703 5.25277 5.27661 5.30196 5.34463 5.42978 5.51697 5.59281 5.69702 5.87978 5.97971 6.22430 6.29442 6.75261 6.90729 7.03915 7.49715 8.11301 8.46059 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021382 B = 0.002670 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.194166 B =10484.515692 C =11608.193368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.026 3.974 3 Si 0.989 3.011 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.466 4.466 8 H 0.091 0.909 9 C 0.246 3.754 10 C -0.310 4.310 11 C -0.048 4.048 12 C -0.328 4.328 13 C 0.366 3.634 14 N -0.656 5.656 15 C 0.705 3.295 16 O -0.606 6.606 17 N -0.722 5.722 18 C 0.151 3.849 19 C -0.062 4.062 20 H 0.095 0.905 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.085 4.085 24 C -0.124 4.124 25 C -0.165 4.165 26 C -0.183 4.183 27 N -0.535 5.535 28 H 0.279 0.721 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.413 0.587 33 H 0.411 0.589 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.315 -6.706 0.723 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.498 4.498 8 H 0.110 0.890 9 C 0.119 3.881 10 C -0.332 4.332 11 C -0.072 4.072 12 C -0.353 4.353 13 C 0.130 3.870 14 N -0.303 5.303 15 C 0.404 3.596 16 O -0.486 6.486 17 N -0.379 5.379 18 C 0.027 3.973 19 C -0.081 4.081 20 H 0.113 0.887 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.202 4.202 26 C -0.220 4.220 27 N -0.254 5.254 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.249 0.751 33 H 0.247 0.753 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.126 0.874 44 H 0.104 0.896 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.511 -6.745 0.349 20.647 hybrid contribution 0.689 0.404 0.189 0.821 sum -18.823 -6.341 0.538 19.869 Atomic orbital electron populations 1.70197 1.08795 1.29052 1.29464 1.26966 0.95805 1.04404 0.92421 0.85102 0.79117 0.75708 0.79185 1.18931 1.19141 1.18025 1.19933 0.95222 0.90235 1.44386 0.89044 1.18702 0.87075 0.93422 0.88886 1.21885 0.99567 0.93683 1.18115 1.21167 0.93617 0.97531 0.94930 1.21817 0.95148 0.98193 1.20098 1.18535 0.83755 0.91044 0.93703 1.42161 1.04153 1.11825 1.72197 1.15936 0.82589 0.82852 0.78184 1.90798 1.69723 1.33129 1.54923 1.44960 1.03001 1.15857 1.74073 1.21339 0.90300 0.85241 1.00414 1.21671 0.90412 0.95312 1.00656 0.88683 1.22582 0.96287 0.99249 0.97637 1.22320 0.95468 0.95453 1.02376 1.21644 0.94723 0.96283 0.99621 1.21729 0.98061 0.89369 1.03339 1.23024 1.03007 1.01783 0.92345 1.23121 0.99798 0.98657 1.00375 1.68048 1.08684 1.25616 1.23101 0.91005 0.86825 0.85232 0.84949 0.75100 0.75252 0.92611 0.92718 0.92159 0.90574 0.90882 0.90615 0.91409 0.90538 0.89096 0.87405 0.89637 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.54 11.49 21.84 0.25 -39.29 16 2 C 0.03 1.31 5.49 85.29 0.47 1.78 16 3 Si 0.99 37.66 29.56 68.60 2.03 39.69 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 6 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 7 C -0.47 -25.50 9.13 23.47 0.21 -25.29 16 8 H 0.09 4.67 7.85 -2.91 -0.02 4.65 16 9 C 0.25 14.06 6.54 40.21 0.26 14.32 16 10 C -0.31 -16.12 9.83 22.87 0.22 -15.89 16 11 C -0.05 -2.35 10.15 22.40 0.23 -2.12 16 12 C -0.33 -16.78 8.83 22.72 0.20 -16.58 16 13 C 0.37 18.98 7.51 133.24 1.00 19.98 16 14 N -0.66 -27.44 5.42 -322.14 -1.75 -29.18 16 15 C 0.70 26.93 8.40 179.06 1.50 28.44 16 16 O -0.61 -27.74 13.14 -3.97 -0.05 -27.79 16 17 N -0.72 -19.07 5.45 -478.53 -2.61 -21.68 16 18 C 0.15 3.50 3.89 86.38 0.34 3.83 16 19 C -0.06 -1.00 2.76 -9.82 -0.03 -1.03 16 20 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 21 C -0.12 -1.79 6.21 31.93 0.20 -1.59 16 22 C -0.12 -1.40 6.84 31.72 0.22 -1.18 16 23 C -0.09 -1.04 6.55 31.23 0.20 -0.84 16 24 C -0.12 -1.86 2.41 -51.97 -0.12 -1.99 16 25 C -0.16 -2.36 10.25 30.48 0.31 -2.05 16 26 C -0.18 -3.00 9.57 30.52 0.29 -2.70 16 27 N -0.53 -30.35 7.92 -186.37 -1.48 -31.82 16 28 H 0.28 13.09 8.29 -92.70 -0.77 12.32 16 29 H 0.11 5.38 8.06 -2.91 -0.02 5.36 16 30 H 0.13 5.34 8.06 -2.91 -0.02 5.31 16 31 H 0.13 6.76 5.33 -3.15 -0.02 6.74 16 32 H 0.41 15.27 8.84 -92.71 -0.82 14.45 16 33 H 0.41 8.30 8.47 -92.71 -0.78 7.52 16 34 H 0.06 1.42 7.23 -2.39 -0.02 1.40 16 35 H 0.05 1.44 7.98 -2.38 -0.02 1.42 16 36 H 0.06 1.06 7.96 -2.38 -0.02 1.04 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.09 1.69 6.43 -2.39 -0.02 1.67 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -69.67 366.42 1.32 -68.35 By element: Atomic # 1 Polarization: 45.23 SS G_CDS: -0.58 Total: 44.64 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 5.51 Total: -2.91 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -5.58 Total: -121.98 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.05 Total: -27.79 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -69.67 1.32 -68.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.749 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds