Wall clock time and date at job start Tue Mar 31 2020 11:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86804 * 119.99697 * 2 1 4 4 H 1.48502 * 109.46784 * 240.00445 * 3 2 1 5 5 H 1.48495 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46748 * 120.00189 * 3 2 1 7 7 C 1.40032 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99658 * 180.02562 * 7 2 1 9 9 C 1.41326 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.40609 * 119.79078 * 180.02562 * 9 7 2 11 11 C 1.38305 * 119.13232 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.67142 * 359.97438 * 11 10 9 13 13 C 1.39647 * 119.49734 * 0.02562 * 12 11 10 14 14 N 1.39251 * 119.57440 * 180.02562 * 13 12 11 15 15 C 1.34771 * 119.99727 * 185.33610 * 14 13 12 16 16 O 1.21575 * 120.00291 * 354.84038 * 15 14 13 17 17 N 1.34783 * 120.00013 * 174.84107 * 15 14 13 18 18 C 1.46500 * 120.00073 * 179.71802 * 17 15 14 19 19 C 1.52995 * 109.47108 * 180.27565 * 18 17 15 20 20 C 1.53002 * 109.47300 * 180.02562 * 19 18 17 21 21 H 1.09001 * 109.63711 * 54.58323 * 20 19 18 22 22 C 1.53022 * 109.64188 * 293.94993 * 20 19 18 23 23 C 1.50069 * 110.14259 * 190.87510 * 22 20 19 24 24 C 1.29441 * 124.07847 * 17.13368 * 23 22 20 25 25 C 1.50070 * 124.07571 * 359.52618 * 24 23 22 26 26 C 1.53025 * 110.14389 * 17.13294 * 25 24 23 27 27 N 1.31921 * 120.84924 * 0.26918 * 13 12 11 28 28 H 0.96995 * 119.99794 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.42775 * 359.97438 * 10 9 7 30 30 H 1.08004 * 120.66580 * 179.97438 * 11 10 9 31 31 H 1.08003 * 120.25225 * 179.97438 * 12 11 10 32 32 H 0.96995 * 119.99909 * 5.32992 * 14 13 12 33 33 H 0.97002 * 119.99777 * 0.02562 * 17 15 14 34 34 H 1.08993 * 109.47226 * 300.28404 * 18 17 15 35 35 H 1.09001 * 109.46504 * 60.27765 * 18 17 15 36 36 H 1.09001 * 109.47170 * 300.00540 * 19 18 17 37 37 H 1.09002 * 109.46837 * 60.00364 * 19 18 17 38 38 H 1.08997 * 109.35934 * 311.08071 * 22 20 19 39 39 H 1.08996 * 109.36083 * 70.67116 * 22 20 19 40 40 H 1.08003 * 117.96109 * 197.10667 * 23 22 20 41 41 H 1.07996 * 117.96369 * 179.55084 * 24 23 22 42 42 H 1.08999 * 109.35614 * 256.92692 * 25 24 23 43 43 H 1.08993 * 109.35834 * 137.33951 * 25 24 23 44 44 H 1.08999 * 109.64259 * 190.87953 * 26 25 24 45 45 H 1.08998 * 109.81492 * 70.35138 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2126 5 1 1.2764 2.7464 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0077 -1.2127 -0.0005 8 1 3.0877 -1.2126 -0.0001 9 6 1.3011 -2.4366 -0.0005 10 6 2.0086 -3.6517 -0.0005 11 6 1.3034 -4.8415 0.0000 12 6 -0.0826 -4.7934 0.0011 13 6 -0.7277 -3.5549 0.0010 14 7 -2.1193 -3.5048 0.0026 15 6 -2.7510 -2.3192 -0.1059 16 8 -2.1092 -1.2867 -0.1108 17 7 -4.0942 -2.2783 -0.2091 18 6 -4.7814 -0.9893 -0.3209 19 6 -6.2904 -1.2224 -0.4168 20 6 -7.0080 0.1238 -0.5342 21 1 -6.5968 0.6863 -1.3725 22 6 -6.8277 0.9175 0.7615 23 6 -7.7355 2.1125 0.7662 24 6 -8.7565 2.2507 -0.0174 25 6 -9.1692 1.2399 -1.0470 26 6 -8.5079 -0.1090 -0.7559 27 7 -0.0357 -2.4318 -0.0053 28 1 -0.4849 0.8400 0.0004 29 1 3.0886 -3.6558 -0.0010 30 1 1.8217 -5.7890 -0.0004 31 1 -0.6588 -5.7070 0.0011 32 1 -2.6340 -4.3231 0.0818 33 1 -4.6063 -3.1021 -0.2048 34 1 -4.5624 -0.3834 0.5582 35 1 -4.4363 -0.4701 -1.2151 36 1 -6.5093 -1.8283 -1.2961 37 1 -6.6354 -1.7416 0.4773 38 1 -7.0661 0.2794 1.6123 39 1 -5.7926 1.2499 0.8406 40 1 -7.5240 2.9064 1.4672 41 1 -9.3480 3.1495 0.0753 42 1 -8.8651 1.5857 -2.0349 43 1 -10.2527 1.1233 -1.0248 44 1 -8.6533 -0.7789 -1.6033 45 1 -8.9464 -0.5500 0.1392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881143394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:48 Heat of formation + Delta-G solvation = 8.076612 kcal Electronic energy + Delta-G solvation = -25638.479612 eV Core-core repulsion = 22041.514350 eV Total energy + Delta-G solvation = -3596.965262 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.10908 -39.88948 -39.34349 -36.36892 -35.70107 -34.80699 -33.46456 -32.17638 -31.66875 -30.88139 -28.87359 -27.37885 -25.08785 -23.95095 -23.28181 -22.81295 -21.84131 -21.22816 -19.74316 -18.84724 -18.65827 -18.02165 -16.97092 -16.57078 -16.47868 -16.24449 -15.89491 -15.58888 -15.40450 -15.00784 -14.88533 -14.62779 -14.38305 -14.14124 -13.84952 -13.70120 -13.31284 -13.28798 -12.93269 -12.85627 -12.71348 -12.64375 -12.55079 -12.29522 -12.09037 -11.77741 -11.52481 -11.46743 -11.20384 -10.99463 -10.84194 -10.80680 -9.89883 -9.85467 -9.77315 -9.08287 -8.75769 -8.00059 -6.39372 0.99262 1.30789 1.39434 1.42732 1.51358 1.54680 1.86162 2.27698 2.59922 3.06184 3.40906 3.74778 3.84402 3.86544 4.09596 4.23098 4.28374 4.38768 4.45201 4.46127 4.52608 4.63321 4.72721 4.76052 4.78472 4.87685 4.94987 4.98672 5.03880 5.08985 5.09324 5.10230 5.17431 5.25517 5.30301 5.37775 5.54379 5.68853 5.75438 5.80706 5.88952 5.94565 6.06852 6.09357 6.34904 6.45144 6.84262 7.09594 7.31312 8.05631 8.40939 8.60412 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014162 B = 0.003171 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.688620 B = 8826.515363 C =10616.608234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.685 5.685 2 C 0.009 3.991 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.467 4.467 8 H 0.086 0.914 9 C 0.236 3.764 10 C -0.331 4.331 11 C -0.034 4.034 12 C -0.346 4.346 13 C 0.364 3.636 14 N -0.661 5.661 15 C 0.654 3.346 16 O -0.518 6.518 17 N -0.737 5.737 18 C 0.146 3.854 19 C -0.108 4.108 20 C -0.081 4.081 21 H 0.064 0.936 22 C -0.092 4.092 23 C -0.169 4.169 24 C -0.161 4.161 25 C -0.094 4.094 26 C -0.109 4.109 27 N -0.508 5.508 28 H 0.268 0.732 29 H 0.104 0.896 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.417 0.583 33 H 0.406 0.594 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.117 -1.132 -0.837 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.304 5.304 2 C -0.216 4.216 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.498 4.498 8 H 0.104 0.896 9 C 0.110 3.890 10 C -0.354 4.354 11 C -0.058 4.058 12 C -0.371 4.371 13 C 0.124 3.876 14 N -0.312 5.312 15 C 0.352 3.648 16 O -0.386 6.386 17 N -0.397 5.397 18 C 0.022 3.978 19 C -0.145 4.145 20 C -0.100 4.100 21 H 0.083 0.917 22 C -0.129 4.129 23 C -0.187 4.187 24 C -0.179 4.179 25 C -0.130 4.130 26 C -0.147 4.147 27 N -0.227 5.227 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.255 0.745 33 H 0.241 0.759 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.206 0.842 -0.867 20.242 hybrid contribution 0.680 -0.602 0.195 0.928 sum -19.526 0.240 -0.671 19.539 Atomic orbital electron populations 1.70564 1.07142 1.27820 1.24844 1.27058 0.96017 1.03975 0.94595 0.85416 0.78652 0.76624 0.79904 1.18433 1.20018 1.18391 1.19869 0.94413 0.90488 1.45037 0.89622 1.18903 0.87972 0.93441 0.88670 1.21803 0.99195 0.93843 1.20588 1.21026 0.93505 0.97319 0.93935 1.20921 0.95149 0.95539 1.25528 1.18869 0.84272 0.91091 0.93401 1.42398 1.03865 1.08973 1.75981 1.16793 0.82937 0.84885 0.80212 1.91376 1.64115 1.31746 1.51361 1.45026 1.03785 1.10225 1.80708 1.21108 0.92488 0.84124 1.00104 1.21747 0.90865 0.97992 1.03942 1.21101 0.96367 0.95086 0.97474 0.91743 1.20569 0.98414 0.95540 0.98345 1.22168 0.97072 0.98959 1.00519 1.22255 0.97781 1.00173 0.97685 1.20510 1.01104 0.93718 0.97705 1.21625 0.93388 0.97135 1.02542 1.68662 1.07224 1.25420 1.21407 0.92135 0.87769 0.84420 0.84954 0.74532 0.75870 0.93794 0.94385 0.89661 0.89870 0.90381 0.92439 0.88153 0.87320 0.90741 0.89706 0.90284 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -40.98 8.98 21.84 0.20 -40.78 16 2 C 0.01 0.52 5.50 85.29 0.47 0.99 16 3 Si 0.97 41.98 29.56 68.60 2.03 44.01 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.47 -27.40 9.14 23.47 0.21 -27.18 16 8 H 0.09 4.68 7.85 -2.91 -0.02 4.66 16 9 C 0.24 14.03 6.55 40.20 0.26 14.30 16 10 C -0.33 -17.14 9.83 22.86 0.22 -16.92 16 11 C -0.03 -1.49 10.15 22.39 0.23 -1.26 16 12 C -0.35 -15.02 9.95 22.72 0.23 -14.80 16 13 C 0.36 18.13 7.43 133.25 0.99 19.12 16 14 N -0.66 -26.32 5.39 -322.14 -1.74 -28.06 16 15 C 0.65 27.72 8.52 179.05 1.53 29.25 16 16 O -0.52 -28.31 12.10 -3.95 -0.05 -28.36 16 17 N -0.74 -21.52 5.56 -478.56 -2.66 -24.18 16 18 C 0.15 4.00 5.46 86.38 0.47 4.47 16 19 C -0.11 -1.84 4.80 30.59 0.15 -1.69 16 20 C -0.08 -1.40 2.23 -10.66 -0.02 -1.42 16 21 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 22 C -0.09 -1.79 4.94 29.66 0.15 -1.64 16 23 C -0.17 -3.14 9.80 27.04 0.27 -2.88 16 24 C -0.16 -2.58 9.80 27.04 0.27 -2.32 16 25 C -0.09 -1.23 6.12 29.66 0.18 -1.05 16 26 C -0.11 -1.44 5.30 30.73 0.16 -1.28 16 27 N -0.51 -30.18 5.73 -186.37 -1.07 -31.25 16 28 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 29 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 30 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 31 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 32 H 0.42 11.97 8.71 -92.71 -0.81 11.16 16 33 H 0.41 8.26 8.49 -92.71 -0.79 7.47 16 34 H 0.04 1.38 6.87 -2.39 -0.02 1.37 16 35 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 38 H 0.08 1.43 8.06 -2.39 -0.02 1.41 16 39 H 0.06 1.34 7.15 -2.39 -0.02 1.32 16 40 H 0.10 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.11 1.50 8.06 -2.91 -0.02 1.47 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 Total: -1.00 -77.91 364.95 1.87 -76.04 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: -0.59 Total: 36.90 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 5.76 Total: -4.32 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -5.27 Total: -124.27 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.05 Total: -28.36 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -77.91 1.87 -76.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.112 kcal (2) G-P(sol) polarization free energy of solvation -77.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds