Wall clock time and date at job start Tue Mar 31 2020 11:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86798 * 119.99887 * 2 1 4 4 H 1.48505 * 109.47203 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47363 * 299.99597 * 3 2 1 6 6 H 1.48501 * 109.47214 * 59.99719 * 3 2 1 7 7 C 1.40032 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99641 * 180.02562 * 7 2 1 9 9 C 1.41329 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.40606 * 119.78997 * 179.97438 * 9 7 2 11 11 C 1.38308 * 119.13241 * 180.02562 * 10 9 7 12 12 C 1.38682 * 118.66978 * 359.97438 * 11 10 9 13 13 C 1.39643 * 119.49798 * 0.02562 * 12 11 10 14 14 N 1.39255 * 119.57799 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00194 * 174.65289 * 14 13 12 16 16 O 1.21579 * 119.99911 * 5.16593 * 15 14 13 17 17 N 1.34777 * 120.00035 * 185.15538 * 15 14 13 18 18 C 1.47019 * 125.64692 * 359.70205 * 17 15 14 19 19 C 1.54333 * 107.26642 * 178.84773 * 18 17 15 20 20 C 1.55161 * 103.01821 * 338.13602 * 19 18 17 21 21 H 1.08998 * 111.00490 * 277.23462 * 20 19 18 22 22 C 1.53000 * 111.00582 * 153.38415 * 20 19 18 23 23 C 1.53777 * 113.61645 * 165.49006 * 22 20 19 24 24 C 1.53961 * 87.01929 * 220.04777 * 23 22 20 25 25 C 1.53775 * 113.61523 * 67.87659 * 22 20 19 26 26 C 1.47421 * 125.64830 * 179.97438 * 17 15 14 27 27 N 1.31934 * 120.85109 * 359.97174 * 13 12 11 28 28 H 0.96993 * 120.00059 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.43052 * 0.02714 * 10 9 7 30 30 H 1.07998 * 120.66646 * 179.97438 * 11 10 9 31 31 H 1.08002 * 120.25651 * 179.72284 * 12 11 10 32 32 H 0.97004 * 119.99505 * 354.65941 * 14 13 12 33 33 H 1.09005 * 109.88249 * 298.38836 * 18 17 15 34 34 H 1.09000 * 109.88528 * 59.55397 * 18 17 15 35 35 H 1.08998 * 110.85019 * 219.67254 * 19 18 17 36 36 H 1.09003 * 110.51870 * 96.44737 * 19 18 17 37 37 H 1.09007 * 112.84658 * 296.68225 * 22 20 19 38 38 H 1.09006 * 113.60999 * 334.56134 * 23 22 20 39 39 H 1.09000 * 113.61838 * 105.46639 * 23 22 20 40 40 H 1.08999 * 113.53520 * 270.81428 * 24 23 22 41 41 H 1.08996 * 113.74280 * 139.93819 * 24 23 22 42 42 H 1.09003 * 113.62173 * 254.53480 * 25 22 20 43 43 H 1.09000 * 113.61462 * 25.43588 * 25 22 20 44 44 H 1.08998 * 110.36826 * 322.94270 * 26 17 15 45 45 H 1.09006 * 110.36355 * 85.25904 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3009 -2.4367 0.0005 10 6 2.0085 -3.6518 0.0005 11 6 1.3032 -4.8415 0.0000 12 6 -0.0828 -4.7935 0.0000 13 6 -0.7278 -3.5549 0.0000 14 7 -2.1194 -3.5047 -0.0005 15 6 -2.7511 -2.3191 0.1083 16 8 -2.1092 -1.2865 0.1123 17 7 -4.0942 -2.2781 0.2124 18 6 -4.9894 -3.4443 0.2144 19 6 -6.4296 -2.9160 0.3832 20 6 -6.2167 -1.5202 1.0265 21 1 -6.0814 -1.6034 2.1048 22 6 -7.3764 -0.5797 0.6926 23 6 -7.4165 0.6839 1.5679 24 6 -8.9461 0.5128 1.6043 25 6 -8.7066 -0.9847 1.3494 26 6 -4.9093 -1.0562 0.3376 27 7 -0.0357 -2.4317 0.0006 28 1 -0.4850 0.8400 -0.0004 29 1 3.0885 -3.6559 0.0010 30 1 1.8215 -5.7890 -0.0004 31 1 -0.6590 -5.7069 -0.0049 32 1 -2.6342 -4.3232 -0.0791 33 1 -4.8983 -3.9832 -0.7288 34 1 -4.7383 -4.1031 1.0458 35 1 -7.0048 -3.5624 1.0461 36 1 -6.9186 -2.8232 -0.5865 37 1 -7.4611 -0.3745 -0.3747 38 1 -6.9397 0.5570 2.5400 39 1 -7.0892 1.5850 1.0493 40 1 -9.4602 1.0181 0.7867 41 1 -9.3884 0.7247 2.5778 42 1 -9.4194 -1.4288 0.6545 43 1 -8.5832 -1.5686 2.2615 44 1 -4.3959 -0.3192 0.9550 45 1 -5.1260 -0.6423 -0.6473 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881143547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:08 Heat of formation + Delta-G solvation = 33.417914 kcal Electronic energy + Delta-G solvation = -26293.182087 eV Core-core repulsion = 22697.315706 eV Total energy + Delta-G solvation = -3595.866381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40390 -40.32367 -39.37331 -37.64057 -35.91395 -34.86031 -32.66254 -32.16499 -30.67960 -30.09223 -27.53187 -26.50191 -26.06097 -24.21817 -23.33407 -22.88173 -21.47219 -20.63764 -20.31112 -19.73966 -18.60685 -17.95395 -17.09972 -16.54319 -16.31591 -16.25283 -16.00180 -15.68860 -15.38939 -14.93420 -14.69457 -14.46956 -14.31507 -13.80715 -13.75971 -13.63915 -13.33588 -13.20593 -12.93358 -12.81393 -12.72352 -12.64249 -12.53680 -12.31227 -11.88172 -11.74230 -11.61910 -11.53976 -11.33524 -10.97568 -10.92773 -10.88797 -10.82112 -9.90411 -9.45045 -9.11612 -8.78180 -8.02402 -6.41775 0.95367 1.27762 1.38224 1.51084 1.53654 1.70228 2.26126 2.51807 3.02824 3.12037 3.43655 3.67698 3.76033 3.93698 4.00507 4.06943 4.23395 4.24462 4.34437 4.36615 4.45957 4.63421 4.67575 4.72342 4.83242 4.87387 4.95035 4.95252 4.96246 4.96522 5.02616 5.05725 5.11267 5.15147 5.22606 5.26924 5.31515 5.47718 5.51748 5.68727 5.70283 5.85501 5.92723 6.07598 6.28927 6.40489 6.82608 7.05889 7.15508 7.96345 8.37802 8.58384 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014591 B = 0.003677 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.492456 B = 7613.699701 C = 9414.831772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.688 5.688 2 C 0.008 3.992 3 Si 0.975 3.025 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.465 4.465 8 H 0.087 0.913 9 C 0.236 3.764 10 C -0.329 4.329 11 C -0.033 4.033 12 C -0.346 4.346 13 C 0.363 3.637 14 N -0.659 5.659 15 C 0.672 3.328 16 O -0.517 6.517 17 N -0.644 5.644 18 C 0.090 3.910 19 C -0.108 4.108 20 C -0.077 4.077 21 H 0.080 0.920 22 C -0.096 4.096 23 C -0.148 4.148 24 C -0.140 4.140 25 C -0.123 4.123 26 C 0.133 3.867 27 N -0.510 5.510 28 H 0.267 0.733 29 H 0.106 0.894 30 H 0.140 0.860 31 H 0.131 0.869 32 H 0.414 0.586 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.082 -4.050 1.848 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.307 5.307 2 C -0.217 4.217 3 Si 0.796 3.204 4 H -0.175 1.175 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.496 4.496 8 H 0.105 0.895 9 C 0.110 3.890 10 C -0.352 4.352 11 C -0.057 4.057 12 C -0.371 4.371 13 C 0.124 3.876 14 N -0.310 5.310 15 C 0.372 3.628 16 O -0.385 6.385 17 N -0.387 5.387 18 C -0.033 4.033 19 C -0.145 4.145 20 C -0.097 4.097 21 H 0.098 0.902 22 C -0.115 4.115 23 C -0.186 4.186 24 C -0.177 4.177 25 C -0.160 4.160 26 C 0.010 3.990 27 N -0.229 5.229 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.158 0.842 31 H 0.149 0.851 32 H 0.251 0.749 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.172 -2.302 1.858 20.388 hybrid contribution 0.980 -0.350 -0.088 1.044 sum -19.192 -2.652 1.770 19.455 Atomic orbital electron populations 1.70585 1.07291 1.27717 1.25086 1.27093 0.95979 1.04136 0.94496 0.85275 0.79692 0.77127 0.78316 1.17465 1.19610 1.19694 1.19934 0.94447 0.90411 1.44826 0.89479 1.18924 0.87857 0.93556 0.88673 1.21813 0.99258 0.93757 1.20336 1.21029 0.93358 0.97415 0.93870 1.20902 0.95230 0.95381 1.25608 1.18866 0.84017 0.91207 0.93530 1.42414 1.03957 1.08684 1.75909 1.16306 0.81350 0.84939 0.80174 1.91367 1.63152 1.31877 1.52088 1.47798 1.02800 1.09580 1.78492 1.22256 0.90796 0.88336 1.01864 1.22606 0.93813 0.95439 1.02653 1.22301 0.92119 0.95682 0.99556 0.90212 1.22465 0.94081 0.95042 0.99886 1.23046 0.97507 0.97951 1.00091 1.22845 0.95413 0.97164 1.02323 1.22859 0.95810 0.96330 1.01049 1.22041 0.90774 0.86642 0.99569 1.68658 1.07372 1.25405 1.21459 0.92189 0.87578 0.84237 0.85070 0.74867 0.91041 0.91279 0.87598 0.89386 0.88860 0.90710 0.92301 0.89776 0.91137 0.90280 0.89636 0.93900 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -41.85 8.98 21.84 0.20 -41.65 16 2 C 0.01 0.47 5.50 85.29 0.47 0.94 16 3 Si 0.98 42.38 29.56 68.60 2.03 44.40 16 4 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.47 -27.48 9.14 23.47 0.21 -27.27 16 8 H 0.09 4.80 7.85 -2.91 -0.02 4.78 16 9 C 0.24 14.16 6.55 40.20 0.26 14.42 16 10 C -0.33 -17.11 9.83 22.86 0.22 -16.89 16 11 C -0.03 -1.46 10.15 22.39 0.23 -1.23 16 12 C -0.35 -15.35 9.95 22.72 0.23 -15.13 16 13 C 0.36 18.65 7.43 133.24 0.99 19.64 16 14 N -0.66 -27.99 5.34 -322.12 -1.72 -29.71 16 15 C 0.67 30.58 8.45 179.05 1.51 32.09 16 16 O -0.52 -29.54 12.36 -3.97 -0.05 -29.59 16 17 N -0.64 -21.38 3.33 -829.80 -2.76 -24.14 16 18 C 0.09 1.91 6.16 86.73 0.53 2.45 16 19 C -0.11 -1.58 6.20 31.79 0.20 -1.39 16 20 C -0.08 -1.46 2.72 -9.41 -0.03 -1.49 16 21 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 22 C -0.10 -1.47 3.09 -10.27 -0.03 -1.50 16 23 C -0.15 -2.47 7.66 31.18 0.24 -2.23 16 24 C -0.14 -1.77 8.09 31.18 0.25 -1.52 16 25 C -0.12 -1.41 7.42 31.12 0.23 -1.18 16 26 C 0.13 3.91 6.37 86.85 0.55 4.46 16 27 N -0.51 -30.89 5.74 -186.37 -1.07 -31.96 16 28 H 0.27 15.41 8.29 -92.71 -0.77 14.64 16 29 H 0.11 5.12 8.06 -2.91 -0.02 5.09 16 30 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 31 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 32 H 0.41 13.38 7.69 -92.71 -0.71 12.67 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.12 8.04 -2.39 -0.02 1.10 16 37 H 0.09 1.43 8.12 -2.38 -0.02 1.41 16 38 H 0.07 1.34 8.06 -2.38 -0.02 1.32 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.09 0.92 8.10 -2.39 -0.02 0.91 16 44 H 0.04 1.52 8.04 -2.39 -0.02 1.50 16 45 H 0.06 1.64 8.02 -2.38 -0.02 1.62 16 Total: -1.00 -79.12 362.78 2.98 -76.15 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.27 Total: 32.31 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 6.08 Total: 4.18 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -5.35 Total: -127.46 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.05 Total: -29.59 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -79.12 2.98 -76.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.564 kcal (2) G-P(sol) polarization free energy of solvation -79.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds