Wall clock time and date at job start Tue Mar 31 2020 11:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86805 * 120.00123 * 2 1 4 4 H 1.48501 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46612 * 299.99478 * 3 2 1 6 6 H 1.48497 * 109.47207 * 59.99094 * 3 2 1 7 7 C 1.40031 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00379 * 180.02562 * 7 2 1 9 9 C 1.41333 * 119.99529 * 0.02562 * 7 2 1 10 10 C 1.40613 * 119.78535 * 179.97438 * 9 7 2 11 11 C 1.38318 * 119.12873 * 179.97438 * 10 9 7 12 12 C 1.38681 * 118.66870 * 359.97438 * 11 10 9 13 13 C 1.39649 * 119.50324 * 0.02562 * 12 11 10 14 14 N 1.39247 * 119.57613 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99482 * 185.38744 * 14 13 12 16 16 O 1.21574 * 120.00369 * 5.25852 * 15 14 13 17 17 N 1.34777 * 120.00032 * 185.26157 * 15 14 13 18 18 C 1.46928 * 120.62659 * 354.68266 * 17 15 14 19 19 C 1.53188 * 108.77900 * 233.58560 * 18 17 15 20 20 C 1.53114 * 109.33149 * 305.36812 * 19 18 17 21 21 C 1.53038 * 109.50200 * 61.33830 * 20 19 18 22 22 H 1.09005 * 109.50133 * 58.61889 * 21 20 19 23 23 C 1.52993 * 109.50009 * 178.68656 * 21 20 19 24 24 C 1.53000 * 117.50224 * 248.68344 * 23 21 20 25 25 C 1.53002 * 117.50299 * 180.02562 * 23 21 20 26 26 C 1.46921 * 120.63569 * 174.66171 * 17 15 14 27 27 N 1.31930 * 120.84284 * 0.25580 * 13 12 11 28 28 H 0.97003 * 120.00219 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.43320 * 359.97438 * 10 9 7 30 30 H 1.07994 * 120.65935 * 180.02562 * 11 10 9 31 31 H 1.08003 * 120.24809 * 179.97438 * 12 11 10 32 32 H 0.96995 * 120.00216 * 5.38795 * 14 13 12 33 33 H 1.09003 * 109.58901 * 353.37583 * 18 17 15 34 34 H 1.09003 * 109.58612 * 113.79993 * 18 17 15 35 35 H 1.09004 * 109.49821 * 65.31472 * 19 18 17 36 36 H 1.08995 * 109.50558 * 185.41359 * 19 18 17 37 37 H 1.08994 * 109.44822 * 301.34939 * 20 19 18 38 38 H 1.08999 * 109.50552 * 181.36150 * 20 19 18 39 39 H 1.09004 * 115.54882 * 34.34938 * 23 21 20 40 40 H 1.09002 * 117.49361 * 359.97438 * 24 23 21 41 41 H 1.09001 * 117.50388 * 145.01134 * 24 23 21 42 42 H 1.09000 * 117.49771 * 214.98242 * 25 23 21 43 43 H 1.08995 * 117.49724 * 359.97438 * 25 23 21 44 44 H 1.08998 * 109.58381 * 6.62643 * 26 17 15 45 45 H 1.08999 * 109.70159 * 246.27333 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8827 2.3963 -1.2126 6 1 1.8826 2.3966 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2127 0.0010 9 6 1.3008 -2.4366 0.0005 10 6 2.0084 -3.6518 0.0005 11 6 1.3031 -4.8416 0.0011 12 6 -0.0829 -4.7934 0.0022 13 6 -0.7280 -3.5548 0.0021 14 7 -2.1196 -3.5047 0.0026 15 6 -2.7511 -2.3191 -0.1070 16 8 -2.1102 -1.3046 -0.3022 17 7 -4.0932 -2.2581 -0.0002 18 6 -4.8912 -3.4860 0.1194 19 6 -5.9734 -3.4783 -0.9648 20 6 -6.7881 -2.1863 -0.8586 21 6 -5.8696 -0.9831 -1.0835 22 1 -5.4015 -1.0610 -2.0648 23 6 -6.6897 0.3063 -1.0098 24 6 -6.8775 1.0992 -2.3048 25 6 -5.9468 1.6287 -1.2110 26 6 -4.7862 -0.9625 -0.0006 27 7 -0.0358 -2.4317 -0.0040 28 1 -0.4850 0.8401 -0.0004 29 1 3.0884 -3.6559 0.0001 30 1 1.8214 -5.7890 0.0015 31 1 -0.6591 -5.7069 0.0022 32 1 -2.6343 -4.3229 0.0819 33 1 -4.2468 -4.3550 -0.0137 34 1 -5.3596 -3.5230 1.1029 35 1 -5.5045 -3.5327 -1.9473 36 1 -6.6320 -4.3359 -0.8276 37 1 -7.2366 -2.1205 0.1326 38 1 -7.5745 -2.1889 -1.6134 39 1 -7.5177 0.2970 -0.3009 40 1 -6.4163 0.7022 -3.2092 41 1 -7.8288 1.6117 -2.4478 42 1 -6.2862 2.4893 -0.6347 43 1 -4.8737 1.5800 -1.3955 44 1 -4.0725 -0.1665 -0.2128 45 1 -5.2457 -0.7913 0.9729 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881146454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:56 Heat of formation + Delta-G solvation = 39.154941 kcal Electronic energy + Delta-G solvation = -26813.212674 eV Core-core repulsion = 23217.595069 eV Total energy + Delta-G solvation = -3595.617605 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49967 -40.07149 -38.96109 -37.12891 -35.96312 -34.89651 -33.43367 -32.19318 -31.76087 -30.64785 -27.54681 -26.26864 -25.02020 -23.74620 -23.21882 -22.90564 -22.10415 -20.98796 -20.35391 -19.72188 -18.62164 -17.91850 -16.73945 -16.59727 -16.27597 -16.09529 -15.99568 -15.71050 -15.40299 -15.15071 -14.93836 -14.65540 -14.40832 -14.11071 -13.83021 -13.74996 -13.61087 -12.91646 -12.89350 -12.72166 -12.53989 -12.45461 -12.32187 -12.10888 -11.86603 -11.77132 -11.72669 -11.53523 -11.49762 -11.06958 -10.89001 -10.83544 -10.74298 -9.89224 -9.40338 -9.11692 -8.75844 -8.02467 -6.41109 0.96069 1.28485 1.38164 1.51044 1.53269 1.74034 2.26102 2.53501 2.88825 3.02528 3.04643 3.62737 3.88449 3.93498 4.06404 4.08320 4.09959 4.15544 4.34129 4.39845 4.42283 4.51459 4.60962 4.68646 4.73688 4.79318 4.82671 4.90120 4.96949 4.98347 5.03309 5.05447 5.06478 5.12956 5.26283 5.27098 5.29200 5.35851 5.53167 5.65089 5.77298 5.85249 5.93439 6.03099 6.26714 6.41125 6.82724 7.06333 7.15379 7.98247 8.38683 8.58414 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.004675 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.423795 B = 5988.066531 C = 8059.390718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.686 5.686 2 C 0.009 3.991 3 Si 0.973 3.027 4 H -0.252 1.252 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.466 4.466 8 H 0.086 0.914 9 C 0.238 3.762 10 C -0.330 4.330 11 C -0.033 4.033 12 C -0.346 4.346 13 C 0.363 3.637 14 N -0.663 5.663 15 C 0.661 3.339 16 O -0.519 6.519 17 N -0.633 5.633 18 C 0.105 3.895 19 C -0.129 4.129 20 C -0.102 4.102 21 C -0.063 4.063 22 H 0.047 0.953 23 C -0.139 4.139 24 C -0.170 4.170 25 C -0.196 4.196 26 C 0.143 3.857 27 N -0.508 5.508 28 H 0.267 0.733 29 H 0.105 0.895 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.414 0.586 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.320 -3.690 -0.694 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.305 5.305 2 C -0.216 4.216 3 Si 0.794 3.206 4 H -0.175 1.175 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.497 4.497 8 H 0.104 0.896 9 C 0.112 3.888 10 C -0.353 4.353 11 C -0.057 4.057 12 C -0.372 4.372 13 C 0.124 3.876 14 N -0.315 5.315 15 C 0.361 3.639 16 O -0.387 6.387 17 N -0.374 5.374 18 C -0.018 4.018 19 C -0.167 4.167 20 C -0.140 4.140 21 C -0.083 4.083 22 H 0.066 0.934 23 C -0.157 4.157 24 C -0.207 4.207 25 C -0.233 4.233 26 C 0.019 3.981 27 N -0.227 5.227 28 H 0.078 0.922 29 H 0.123 0.877 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.253 0.747 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.144 0.856 40 H 0.102 0.898 41 H 0.131 0.869 42 H 0.124 0.876 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.496 -1.961 -0.832 18.618 hybrid contribution 1.008 -0.375 -0.064 1.078 sum -17.488 -2.336 -0.896 17.666 Atomic orbital electron populations 1.70569 1.07241 1.27646 1.25066 1.27056 0.95989 1.04023 0.94532 0.85296 0.79708 0.77236 0.78311 1.17546 1.19815 1.19501 1.19923 0.94413 0.90458 1.44944 0.89599 1.18893 0.87876 0.93450 0.88596 1.21818 0.99225 0.93826 1.20453 1.21022 0.93402 0.97371 0.93897 1.20907 0.95209 0.95441 1.25622 1.18875 0.84180 0.91159 0.93400 1.42625 1.03931 1.08913 1.76054 1.16636 0.82593 0.84613 0.80104 1.91320 1.63719 1.33205 1.50426 1.47455 1.03051 1.08423 1.78468 1.21876 0.93731 0.85668 1.00506 1.21921 0.97306 0.99466 0.97998 1.21508 0.97093 0.92047 1.03306 1.21032 0.94819 0.94927 0.97517 0.93439 1.22291 1.01594 0.90696 1.01140 1.23042 1.01526 1.03635 0.92447 1.22953 0.97697 0.98316 1.04299 1.21331 0.93596 0.84197 0.98934 1.68629 1.07305 1.25411 1.21382 0.92213 0.87688 0.84332 0.85096 0.74677 0.90303 0.89790 0.93160 0.87694 0.90154 0.90201 0.85608 0.89849 0.86872 0.87635 0.91278 0.92757 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -41.28 9.08 21.84 0.20 -41.08 16 2 C 0.01 0.53 5.50 85.29 0.47 1.00 16 3 Si 0.97 42.25 29.56 68.60 2.03 44.27 16 4 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.47 -27.47 9.14 23.47 0.21 -27.26 16 8 H 0.09 4.74 7.85 -2.91 -0.02 4.71 16 9 C 0.24 14.20 6.55 40.20 0.26 14.46 16 10 C -0.33 -17.17 9.83 22.87 0.22 -16.94 16 11 C -0.03 -1.46 10.15 22.39 0.23 -1.23 16 12 C -0.35 -15.28 9.95 22.72 0.23 -15.05 16 13 C 0.36 18.46 7.42 133.24 0.99 19.45 16 14 N -0.66 -27.60 5.29 -322.13 -1.71 -29.30 16 15 C 0.66 29.32 8.25 179.05 1.48 30.80 16 16 O -0.52 -28.97 11.65 -3.95 -0.05 -29.02 16 17 N -0.63 -20.36 2.97 -836.93 -2.49 -22.85 16 18 C 0.10 2.20 6.39 86.36 0.55 2.75 16 19 C -0.13 -2.12 6.08 30.70 0.19 -1.93 16 20 C -0.10 -1.62 5.16 30.65 0.16 -1.47 16 21 C -0.06 -1.44 2.49 -10.72 -0.03 -1.46 16 22 H 0.05 1.32 7.90 -2.38 -0.02 1.30 16 23 C -0.14 -2.65 5.15 -10.79 -0.06 -2.71 16 24 C -0.17 -3.15 10.18 30.62 0.31 -2.84 16 25 C -0.20 -4.35 9.81 30.62 0.30 -4.05 16 26 C 0.14 4.26 5.48 86.36 0.47 4.73 16 27 N -0.51 -30.48 5.74 -186.36 -1.07 -31.55 16 28 H 0.27 15.22 8.29 -92.71 -0.77 14.45 16 29 H 0.10 5.07 8.06 -2.91 -0.02 5.05 16 30 H 0.14 4.91 8.06 -2.91 -0.02 4.89 16 31 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 32 H 0.41 12.98 6.19 -92.71 -0.57 12.41 16 33 H 0.08 1.54 5.65 -2.39 -0.01 1.53 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.13 1.88 8.11 -2.38 -0.02 1.86 16 40 H 0.08 1.70 8.05 -2.39 -0.02 1.68 16 41 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.07 1.97 7.69 -2.39 -0.02 1.95 16 44 H 0.05 2.08 6.37 -2.39 -0.02 2.07 16 45 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -78.20 358.54 3.33 -74.87 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.43 Total: 36.40 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 5.99 Total: -1.74 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -5.06 Total: -124.79 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.05 Total: -29.02 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -78.20 3.33 -74.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881146454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.027 kcal (2) G-P(sol) polarization free energy of solvation -78.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds