Wall clock time and date at job start Tue Mar 31 2020 11:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86800 * 120.00416 * 2 1 4 4 H 1.48503 * 109.47136 * 270.00049 * 3 2 1 5 5 H 1.48497 * 109.46775 * 30.00043 * 3 2 1 6 6 H 1.48500 * 109.47291 * 150.00273 * 3 2 1 7 7 C 1.40033 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.41328 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.40609 * 119.78918 * 180.02562 * 9 7 2 11 11 C 1.38308 * 119.12984 * 179.97438 * 10 9 7 12 12 C 1.38687 * 118.67193 * 359.74955 * 11 10 9 13 13 C 1.39640 * 119.49473 * 0.47137 * 12 11 10 14 14 N 1.39253 * 119.57337 * 179.79080 * 13 12 11 15 15 C 1.34774 * 119.99912 * 18.47402 * 14 13 12 16 16 O 1.21569 * 120.00288 * 6.03820 * 15 14 13 17 17 N 1.34780 * 119.99502 * 185.75824 * 15 14 13 18 18 C 1.46928 * 120.62350 * 174.76498 * 17 15 14 19 19 C 1.53630 * 108.53803 * 126.37140 * 18 17 15 20 20 C 1.53043 * 109.24050 * 54.85871 * 19 18 17 21 21 C 1.53040 * 109.53715 * 298.50583 * 20 19 18 22 22 H 1.08997 * 109.49950 * 301.42127 * 21 20 19 23 23 C 1.53002 * 109.49964 * 181.31545 * 21 20 19 24 24 C 1.53001 * 117.49343 * 128.78471 * 23 21 20 25 25 C 1.52999 * 117.49244 * 60.16700 * 23 21 20 26 26 C 1.46919 * 120.63644 * 355.05290 * 17 15 14 27 27 N 1.31927 * 120.85328 * 359.52210 * 13 12 11 28 28 H 0.97006 * 119.99279 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.43259 * 359.97438 * 10 9 7 30 30 H 1.08004 * 120.66565 * 179.97438 * 11 10 9 31 31 H 1.08004 * 120.25286 * 180.26810 * 12 11 10 32 32 H 0.96998 * 119.99684 * 198.47550 * 14 13 12 33 33 H 1.08998 * 109.59221 * 246.20009 * 18 17 15 34 34 H 1.08999 * 109.59177 * 6.63569 * 18 17 15 35 35 H 1.08993 * 109.63579 * 294.86694 * 19 18 17 36 36 H 1.09002 * 109.42904 * 174.72156 * 19 18 17 37 37 H 1.08997 * 109.45811 * 178.48663 * 20 19 18 38 38 H 1.09003 * 109.45261 * 58.52240 * 20 19 18 39 39 H 1.08994 * 115.54867 * 274.49706 * 23 21 20 40 40 H 1.08992 * 117.50248 * 0.02562 * 24 23 21 41 41 H 1.09003 * 117.49268 * 145.02599 * 24 23 21 42 42 H 1.09006 * 117.49553 * 214.97754 * 25 23 21 43 43 H 1.08995 * 117.50441 * 359.97438 * 25 23 21 44 44 H 1.09002 * 109.58532 * 353.36871 * 26 17 15 45 45 H 1.08991 * 109.58890 * 113.79279 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4891 2.0464 -1.4001 5 1 1.4390 2.6526 0.7000 6 1 3.5391 1.4400 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0083 -3.6518 -0.0005 11 6 1.3029 -4.8415 0.0000 12 6 -0.0831 -4.7934 0.0058 13 6 -0.7280 -3.5548 0.0010 14 7 -2.1196 -3.5046 0.0024 15 6 -2.8325 -4.5849 0.3780 16 8 -2.2643 -5.5647 0.8195 17 7 -4.1759 -4.5767 0.2694 18 6 -4.9581 -5.7846 0.5660 19 6 -6.0351 -5.4271 1.6016 20 6 -6.8663 -4.2527 1.0800 21 6 -5.9628 -3.0330 0.8846 22 1 -5.4887 -2.7760 1.8317 23 6 -6.8004 -1.8502 0.3943 24 6 -6.6657 -0.5274 1.1512 25 6 -7.9365 -1.3666 1.2978 26 6 -4.8855 -3.3618 -0.1538 27 7 -0.0359 -2.4317 0.0004 28 1 -0.4849 0.8402 -0.0004 29 1 3.0883 -3.6561 -0.0010 30 1 1.8211 -5.7891 -0.0004 31 1 -0.6593 -5.7068 0.0108 32 1 -2.5758 -2.6920 -0.2669 33 1 -5.4311 -6.1470 -0.3467 34 1 -4.3017 -6.5550 0.9706 35 1 -5.5604 -5.1474 2.5421 36 1 -6.6834 -6.2884 1.7628 37 1 -7.6487 -4.0134 1.8002 38 1 -7.3206 -4.5245 0.1272 39 1 -6.9581 -1.8004 -0.6830 40 1 -5.9801 -0.4996 1.9980 41 1 -6.7346 0.3932 0.5716 42 1 -8.8416 -0.9981 0.8147 43 1 -8.0875 -1.8913 2.2411 44 1 -4.1810 -2.5331 -0.2243 45 1 -5.3525 -3.5307 -1.1240 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881146455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:58 Heat of formation + Delta-G solvation = 25.638544 kcal Electronic energy + Delta-G solvation = -26358.678428 eV Core-core repulsion = 22762.474708 eV Total energy + Delta-G solvation = -3596.203720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92356 -40.18064 -39.23065 -37.25668 -36.09174 -35.19403 -33.58932 -32.34826 -31.82761 -30.83464 -27.50594 -26.46869 -24.92435 -23.85301 -23.50724 -23.09924 -22.08256 -21.03787 -20.60649 -19.44514 -19.24831 -18.02950 -17.29096 -16.70534 -16.51572 -16.21722 -16.14155 -15.73469 -15.59211 -15.31027 -14.83854 -14.65987 -14.56017 -14.44262 -13.94834 -13.85567 -13.59904 -13.11662 -12.90570 -12.82708 -12.65928 -12.58316 -12.42561 -12.23097 -11.85519 -11.83856 -11.78351 -11.63254 -11.52681 -11.21398 -11.05790 -10.82489 -10.65050 -9.99666 -9.72856 -9.61115 -8.92139 -8.30030 -6.50654 0.81322 1.12388 1.42611 1.47880 1.54262 1.57249 2.07093 2.24604 2.75657 2.89039 2.92295 3.63712 3.78216 3.82511 3.93366 4.04513 4.10764 4.16701 4.29913 4.32436 4.35747 4.46988 4.54469 4.64567 4.73454 4.78945 4.82969 4.85491 4.89713 4.94086 4.97343 5.03287 5.06686 5.08482 5.21816 5.23744 5.29395 5.36208 5.49192 5.50341 5.63830 5.69232 5.80221 5.98373 6.17307 6.28224 6.70527 6.83312 6.98004 7.44732 8.10651 8.45625 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012487 B = 0.004037 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.849109 B = 6934.030271 C = 9008.605144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.466 4.466 8 H 0.092 0.908 9 C 0.246 3.754 10 C -0.310 4.310 11 C -0.047 4.047 12 C -0.328 4.328 13 C 0.364 3.636 14 N -0.658 5.658 15 C 0.705 3.295 16 O -0.604 6.604 17 N -0.619 5.619 18 C 0.122 3.878 19 C -0.128 4.128 20 C -0.103 4.103 21 C -0.065 4.065 22 H 0.052 0.948 23 C -0.146 4.146 24 C -0.196 4.196 25 C -0.162 4.162 26 C 0.113 3.887 27 N -0.534 5.534 28 H 0.279 0.721 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.409 0.591 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.101 0.899 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.516 -1.881 -0.296 18.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.498 4.498 8 H 0.110 0.890 9 C 0.120 3.880 10 C -0.332 4.332 11 C -0.072 4.072 12 C -0.353 4.353 13 C 0.128 3.872 14 N -0.307 5.307 15 C 0.406 3.594 16 O -0.484 6.484 17 N -0.356 5.356 18 C 0.001 3.999 19 C -0.167 4.167 20 C -0.140 4.140 21 C -0.084 4.084 22 H 0.071 0.929 23 C -0.165 4.165 24 C -0.233 4.233 25 C -0.199 4.199 26 C -0.009 4.009 27 N -0.254 5.254 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.248 0.752 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.126 0.874 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.797 -1.688 0.010 18.873 hybrid contribution 0.979 0.336 0.054 1.036 sum -17.819 -1.352 0.064 17.870 Atomic orbital electron populations 1.70210 1.08837 1.28993 1.29564 1.26965 0.95774 1.04401 0.92379 0.85121 0.78960 0.75618 0.79458 1.18615 1.19314 1.18070 1.19950 0.94839 0.90086 1.44878 0.88973 1.18701 0.87057 0.93509 0.88753 1.21888 0.99577 0.93389 1.18378 1.21164 0.93506 0.97673 0.94833 1.21828 0.95241 0.97698 1.20502 1.18575 0.83719 0.90912 0.94038 1.42418 1.04217 1.15792 1.68279 1.15877 0.82480 0.82471 0.78527 1.90766 1.69565 1.35562 1.52517 1.47373 1.02343 1.14725 1.71113 1.21811 0.92843 0.85431 0.99863 1.21994 0.97072 1.00169 0.97435 1.21517 0.97127 0.92616 1.02770 1.21021 0.94767 0.95203 0.97437 0.92912 1.22216 1.01584 0.93856 0.98847 1.23059 1.01593 0.95491 1.03136 1.22976 0.92628 1.02851 1.01422 1.21883 0.94685 0.85444 0.98917 1.68055 1.08505 1.25473 1.23400 0.91070 0.86758 0.85140 0.84906 0.75241 0.89158 0.90927 0.93479 0.88043 0.90280 0.89839 0.86376 0.90245 0.88355 0.87372 0.88612 0.91538 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.10 11.46 21.84 0.25 -39.85 16 2 C 0.03 1.35 5.50 85.29 0.47 1.82 16 3 Si 0.99 37.94 29.56 68.60 2.03 39.97 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 6 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.47 -25.66 9.14 23.47 0.21 -25.44 16 8 H 0.09 4.72 7.85 -2.91 -0.02 4.70 16 9 C 0.25 14.21 6.55 40.20 0.26 14.48 16 10 C -0.31 -16.22 9.83 22.87 0.22 -16.00 16 11 C -0.05 -2.33 10.15 22.39 0.23 -2.10 16 12 C -0.33 -17.05 8.83 22.72 0.20 -16.84 16 13 C 0.36 19.31 7.51 133.24 1.00 20.31 16 14 N -0.66 -29.02 5.32 -322.15 -1.71 -30.73 16 15 C 0.70 28.45 8.14 179.05 1.46 29.91 16 16 O -0.60 -28.35 12.55 -3.93 -0.05 -28.40 16 17 N -0.62 -17.90 2.97 -836.08 -2.48 -20.38 16 18 C 0.12 2.79 6.47 86.51 0.56 3.35 16 19 C -0.13 -2.21 6.10 30.82 0.19 -2.03 16 20 C -0.10 -1.47 5.03 30.62 0.15 -1.32 16 21 C -0.06 -1.21 2.49 -10.71 -0.03 -1.24 16 22 H 0.05 1.25 7.90 -2.39 -0.02 1.23 16 23 C -0.15 -2.30 5.15 -10.79 -0.06 -2.36 16 24 C -0.20 -3.46 10.18 30.59 0.31 -3.15 16 25 C -0.16 -2.20 9.72 30.59 0.30 -1.90 16 26 C 0.11 2.56 5.66 86.37 0.49 3.05 16 27 N -0.53 -30.81 7.89 -186.37 -1.47 -32.28 16 28 H 0.28 13.28 8.29 -92.70 -0.77 12.51 16 29 H 0.11 5.44 8.06 -2.91 -0.02 5.42 16 30 H 0.13 5.40 8.06 -2.91 -0.02 5.38 16 31 H 0.13 6.88 5.32 -3.33 -0.02 6.86 16 32 H 0.41 16.50 6.31 -92.71 -0.58 15.91 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.07 2.01 7.00 -2.39 -0.02 1.99 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 0.97 7.25 -2.39 -0.02 0.95 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.12 1.61 8.11 -2.39 -0.02 1.59 16 40 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.10 1.26 7.61 -2.39 -0.02 1.24 16 44 H 0.07 1.73 5.64 -2.39 -0.01 1.72 16 45 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -70.72 359.94 2.96 -67.76 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: 0.42 Total: 43.38 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.97 Total: 0.53 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -5.41 Total: -123.24 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.05 Total: -28.40 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -70.72 2.96 -67.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881146455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.401 kcal (2) G-P(sol) polarization free energy of solvation -70.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds