Wall clock time and date at job start Tue Mar 31 2020 11:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86807 * 120.00032 * 2 1 4 4 H 1.48497 * 109.47121 * 240.00298 * 3 2 1 5 5 H 1.48501 * 109.46857 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47366 * 119.99920 * 3 2 1 7 7 C 1.40032 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.41332 * 119.99261 * 359.97438 * 7 2 1 10 10 C 1.40613 * 119.78317 * 179.97438 * 9 7 2 11 11 C 1.38308 * 119.12829 * 180.02562 * 10 9 7 12 12 C 1.38691 * 118.67229 * 359.73294 * 11 10 9 13 13 C 1.39646 * 119.49327 * 0.55599 * 12 11 10 14 14 N 1.39250 * 119.57419 * 179.70612 * 13 12 11 15 15 C 1.34775 * 120.00113 * 185.40406 * 14 13 12 16 16 O 1.21582 * 119.99948 * 354.86029 * 15 14 13 17 17 N 1.34772 * 120.00154 * 174.85790 * 15 14 13 18 18 C 1.46500 * 120.00094 * 180.02562 * 17 15 14 19 19 C 1.52931 * 109.41766 * 84.63371 * 18 17 15 20 20 C 1.53186 * 109.45555 * 183.08654 * 19 18 17 21 21 C 1.53142 * 108.88407 * 303.43848 * 20 19 18 22 22 C 1.52809 * 117.74829 * 199.61833 * 21 20 19 23 23 C 1.52848 * 117.68086 * 268.50125 * 21 20 19 24 24 C 1.53154 * 115.00809 * 53.93618 * 21 20 19 25 25 C 1.52942 * 109.41078 * 205.00047 * 18 17 15 26 26 N 1.31928 * 120.85063 * 359.42717 * 13 12 11 27 27 H 0.96997 * 119.99926 * 359.97438 * 1 2 3 28 28 H 1.07993 * 120.43818 * 359.97438 * 10 9 7 29 29 H 1.08003 * 120.66498 * 180.02562 * 11 10 9 30 30 H 1.07996 * 120.25509 * 180.27931 * 12 11 10 31 31 H 0.97001 * 120.00012 * 5.40898 * 14 13 12 32 32 H 0.97001 * 120.00379 * 0.02562 * 17 15 14 33 33 H 1.09007 * 109.35191 * 324.81437 * 18 17 15 34 34 H 1.08993 * 109.47822 * 303.08542 * 19 18 17 35 35 H 1.09005 * 109.47063 * 63.09509 * 19 18 17 36 36 H 1.08997 * 109.56726 * 183.61659 * 20 19 18 37 37 H 1.09000 * 109.56310 * 63.25701 * 20 19 18 38 38 H 1.09006 * 117.50224 * 215.10641 * 22 21 20 39 39 H 1.08993 * 117.50156 * 0.14754 * 22 21 20 40 40 H 1.09005 * 117.49895 * 359.72521 * 23 21 20 41 41 H 1.08996 * 117.50849 * 144.77862 * 23 21 20 42 42 H 1.09001 * 109.57251 * 186.24231 * 24 21 20 43 43 H 1.09001 * 109.57070 * 65.88020 * 24 21 20 44 44 H 1.09001 * 109.47437 * 296.89847 * 25 18 17 45 45 H 1.08996 * 109.47535 * 56.91235 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0077 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3010 -2.4366 -0.0005 10 6 2.0086 -3.6517 -0.0016 11 6 1.3034 -4.8415 -0.0022 12 6 -0.0827 -4.7934 0.0041 13 6 -0.7277 -3.5549 -0.0011 14 7 -2.1193 -3.5047 -0.0011 15 6 -2.7510 -2.3197 -0.1159 16 8 -2.1091 -1.2871 -0.1255 17 7 -4.0940 -2.2793 -0.2202 18 6 -4.7805 -0.9912 -0.3457 19 6 -4.7915 -0.5617 -1.8134 20 6 -5.4406 0.8204 -1.9357 21 6 -6.8457 0.7636 -1.3294 22 6 -7.8391 1.8525 -1.7326 23 6 -8.0086 0.4268 -2.2625 24 6 -6.9103 0.2359 0.1069 25 6 -6.2155 -1.1281 0.1655 26 7 -0.0357 -2.4317 -0.0005 27 1 -0.4850 0.8400 0.0004 28 1 3.0885 -3.6559 -0.0029 29 1 1.8217 -5.7890 -0.0026 30 1 -0.6588 -5.7069 0.0084 31 1 -2.6341 -4.3227 0.0817 32 1 -4.6062 -3.1030 -0.2122 33 1 -4.2548 -0.2424 0.2469 34 1 -3.7685 -0.5171 -2.1867 35 1 -5.3609 -1.2836 -2.3990 36 1 -5.5076 1.1005 -2.9870 37 1 -4.8404 1.5544 -1.3981 38 1 -8.5448 2.1953 -0.9759 39 1 -7.4955 2.6126 -2.4340 40 1 -7.7761 0.2491 -3.3125 41 1 -8.8255 -0.1683 -1.8543 42 1 -7.9517 0.1283 0.4099 43 1 -6.4039 0.9325 0.7749 44 1 -6.7573 -1.8390 -0.4584 45 1 -6.2019 -1.4850 1.1953 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881147517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:20 Heat of formation + Delta-G solvation = 42.488352 kcal Electronic energy + Delta-G solvation = -26481.783523 eV Core-core repulsion = 22886.310466 eV Total energy + Delta-G solvation = -3595.473057 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.90129 -39.00265 -37.62340 -35.45568 -33.91089 -32.92376 -32.02773 -30.95304 -30.22024 -28.89107 -26.53359 -25.36351 -22.92376 -22.69019 -22.16978 -21.26417 -20.71814 -19.71239 -18.79293 -17.87939 -17.00015 -16.28226 -15.49352 -15.45663 -14.88079 -14.54630 -14.44282 -14.35488 -13.74284 -13.57474 -13.46492 -13.09644 -12.85617 -12.67296 -12.30491 -12.24791 -12.04974 -11.85378 -11.78235 -11.63557 -11.11759 -11.07470 -10.91847 -10.69195 -10.60705 -10.40369 -10.23753 -10.04934 -9.89294 -9.71520 -9.61591 -9.01025 -8.95871 -8.35841 -7.89229 -7.14271 -6.87647 -6.04838 -4.33393 2.90819 3.18995 3.20214 3.22215 3.30800 3.32681 3.66987 4.11645 4.28914 4.48357 4.61256 4.73808 4.80571 4.91881 5.00851 5.06731 5.20388 5.28586 5.47590 5.48265 5.49736 5.69723 5.72835 5.77598 5.89660 5.97484 6.00349 6.06862 6.10438 6.13708 6.15701 6.24418 6.43242 6.54143 6.54504 6.69606 6.86671 6.90678 7.13108 7.30335 7.44687 7.68256 7.81866 7.87363 8.23528 8.36344 8.74705 8.87211 9.12295 9.69226 10.33762 10.55868 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.003942 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.289383 B = 7101.921607 C = 8741.867226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.647 5.647 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.426 4.426 8 H 0.081 0.919 9 C 0.271 3.729 10 C -0.308 4.308 11 C -0.036 4.036 12 C -0.360 4.360 13 C 0.388 3.612 14 N -0.675 5.675 15 C 0.663 3.337 16 O -0.462 6.462 17 N -0.757 5.757 18 C 0.172 3.828 19 C -0.125 4.125 20 C -0.078 4.078 21 C -0.119 4.119 22 C -0.179 4.179 23 C -0.176 4.176 24 C -0.076 4.076 25 C -0.121 4.121 26 N -0.471 5.471 27 H 0.272 0.728 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.394 0.606 32 H 0.382 0.618 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.489 0.287 -1.789 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.265 5.265 2 C -0.173 4.173 3 Si 0.718 3.282 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.457 4.457 8 H 0.099 0.901 9 C 0.146 3.854 10 C -0.331 4.331 11 C -0.060 4.060 12 C -0.386 4.386 13 C 0.148 3.852 14 N -0.323 5.323 15 C 0.361 3.639 16 O -0.326 6.326 17 N -0.416 5.416 18 C 0.067 3.933 19 C -0.164 4.164 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.216 4.216 23 C -0.212 4.212 24 C -0.114 4.114 25 C -0.159 4.159 26 N -0.190 5.190 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.226 0.774 32 H 0.214 0.786 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.492 2.312 -1.806 16.750 hybrid contribution 0.208 -1.082 -0.050 1.103 sum -16.284 1.231 -1.856 16.435 Atomic orbital electron populations 1.70339 1.05517 1.27336 1.23344 1.26179 0.95133 1.00415 0.95524 0.86633 0.80234 0.81778 0.79601 1.19241 1.20450 1.19240 1.19530 0.93970 0.89419 1.42750 0.90101 1.18388 0.87204 0.91904 0.87875 1.21615 0.98494 0.93572 1.19412 1.20538 0.93142 0.96484 0.95874 1.20437 0.94745 0.94822 1.28573 1.18343 0.82513 0.90842 0.93492 1.42591 1.05198 1.07997 1.76509 1.16466 0.81503 0.85442 0.80494 1.91380 1.62280 1.29776 1.49133 1.45398 1.05715 1.08419 1.82050 1.20563 0.91158 0.85697 0.95931 1.21901 1.01456 0.95946 0.97056 1.21103 0.92771 0.97805 0.99913 1.21548 0.91935 1.02683 0.95737 1.22977 1.02795 0.92120 1.03676 1.23000 1.00423 0.98467 0.99360 1.21072 1.00212 0.96229 0.93887 1.21767 0.95276 0.97551 1.01341 1.68702 1.06801 1.23122 1.20353 0.91634 0.88660 0.88703 0.89241 0.77356 0.78613 0.89571 0.90790 0.92451 0.91974 0.91096 0.89059 0.88974 0.89054 0.89132 0.91745 0.91113 0.91722 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.20 8.99 55.55 0.50 -17.70 16 2 C 0.06 1.53 5.50 -17.34 -0.10 1.43 16 3 Si 0.89 19.57 29.56 -169.99 -5.02 14.54 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.43 -11.94 9.14 -37.73 -0.34 -12.29 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 9 C 0.27 7.78 6.55 -85.00 -0.56 7.22 16 10 C -0.31 -7.91 9.83 -38.66 -0.38 -8.29 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.36 -8.25 9.96 -38.89 -0.39 -8.64 16 13 C 0.39 9.67 7.43 -154.99 -1.15 8.52 16 14 N -0.67 -13.63 5.39 -15.79 -0.09 -13.71 16 15 C 0.66 13.70 8.48 -86.92 -0.74 12.96 16 16 O -0.46 -11.80 11.77 5.29 0.06 -11.74 16 17 N -0.76 -11.32 5.08 -58.74 -0.30 -11.62 16 18 C 0.17 2.38 2.36 -68.00 -0.16 2.22 16 19 C -0.12 -1.70 5.49 -26.67 -0.15 -1.85 16 20 C -0.08 -0.92 5.67 -26.56 -0.15 -1.07 16 21 C -0.12 -1.18 1.97 -154.53 -0.31 -1.49 16 22 C -0.18 -1.57 9.99 -26.81 -0.27 -1.84 16 23 C -0.18 -1.54 9.93 -26.79 -0.27 -1.81 16 24 C -0.08 -0.73 5.67 -26.56 -0.15 -0.88 16 25 C -0.12 -1.24 5.39 -26.67 -0.14 -1.39 16 26 N -0.47 -13.49 5.74 -10.26 -0.06 -13.55 16 27 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 28 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 30 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 31 H 0.39 6.14 8.71 -40.82 -0.36 5.78 16 32 H 0.38 4.45 8.62 -40.82 -0.35 4.09 16 33 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -32.81 364.18 -12.04 -44.85 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -6.98 Total: 11.86 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -5.64 Total: -8.42 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.06 Total: -56.59 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.06 Total: -11.74 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.81 -12.04 -44.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.341 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds