Wall clock time and date at job start Tue Mar 31 2020 11:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86794 * 119.99980 * 2 1 4 4 H 1.48504 * 109.47081 * 269.99476 * 3 2 1 5 5 H 1.48504 * 109.47401 * 29.99467 * 3 2 1 6 6 H 1.48500 * 109.47541 * 149.99962 * 3 2 1 7 7 C 1.40031 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.41338 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.40619 * 119.78420 * 180.02562 * 9 7 2 11 11 C 1.38307 * 119.12435 * 179.97438 * 10 9 7 12 12 C 1.38694 * 118.66855 * 0.02562 * 11 10 9 13 13 C 1.39628 * 119.50213 * 359.97438 * 12 11 10 14 14 N 1.39267 * 119.57890 * 180.02562 * 13 12 11 15 15 C 1.34778 * 120.00000 * 174.66399 * 14 13 12 16 16 O 1.21271 * 120.00459 * 5.14771 * 15 14 13 17 17 C 1.51496 * 119.99871 * 185.15058 * 15 14 13 18 18 C 1.52478 * 108.85057 * 299.16696 * 17 15 14 19 19 C 1.52128 * 112.63441 * 188.80193 * 18 17 15 20 20 C 1.52187 * 112.85369 * 44.68667 * 19 18 17 21 21 N 1.45811 * 112.61855 * 314.07974 * 20 19 18 22 22 C 1.45876 * 113.93454 * 288.68529 * 21 20 19 23 23 C 1.52308 * 112.13892 * 70.07834 * 22 21 20 24 24 C 1.52171 * 112.43481 * 47.57728 * 23 22 21 25 25 C 1.46486 * 112.11014 * 57.12140 * 21 20 19 26 26 N 1.31929 * 120.84808 * 359.97438 * 13 12 11 27 27 H 0.97000 * 120.00038 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.43912 * 359.96722 * 10 9 7 29 29 H 1.07999 * 120.66448 * 179.97438 * 11 10 9 30 30 H 1.08004 * 120.24798 * 179.97438 * 12 11 10 31 31 H 0.96999 * 120.00019 * 354.66349 * 14 13 12 32 32 H 1.09701 * 109.05737 * 310.30515 * 18 17 15 33 33 H 1.09713 * 109.03327 * 67.38846 * 18 17 15 34 34 H 1.08745 * 110.89584 * 279.63247 * 19 18 17 35 35 H 1.10622 * 107.93742 * 163.73531 * 19 18 17 36 36 H 1.09706 * 109.04675 * 192.75045 * 20 19 18 37 37 H 1.09678 * 109.17059 * 75.59403 * 20 19 18 38 38 H 1.09635 * 109.22324 * 191.11202 * 22 21 20 39 39 H 1.09572 * 109.36501 * 308.76048 * 22 21 20 40 40 H 1.10501 * 107.98553 * 166.78399 * 23 22 21 41 41 H 1.08685 * 110.72649 * 282.91835 * 23 22 21 42 42 H 1.09683 * 109.24740 * 192.95267 * 24 23 22 43 43 H 1.09701 * 109.19760 * 75.58143 * 24 23 22 44 44 H 1.08867 * 109.94881 * 175.82172 * 25 21 20 45 45 H 1.08894 * 109.90136 * 54.78819 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4388 2.6527 0.6999 6 1 3.5389 1.4402 0.7000 7 6 2.0075 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0010 9 6 1.3008 -2.4367 0.0016 10 6 2.0085 -3.6519 0.0027 11 6 1.3032 -4.8416 0.0043 12 6 -0.0829 -4.7934 0.0043 13 6 -0.7279 -3.5550 0.0031 14 7 -2.1196 -3.5047 0.0036 15 6 -2.7511 -2.3189 0.1111 16 8 -2.1109 -1.2889 0.1134 17 6 -4.2607 -2.2726 0.2291 18 6 -4.8720 -2.8971 -1.0204 19 6 -6.3794 -2.7056 -1.0931 20 6 -6.8128 -1.2892 -0.7436 21 7 -6.1551 -0.7811 0.4544 22 6 -6.6128 -1.4054 1.6908 23 6 -6.1582 -2.8545 1.8046 24 6 -4.6801 -3.0262 1.4865 25 6 -4.6953 -0.8079 0.3354 26 7 -0.0358 -2.4318 0.0026 27 1 -0.4850 0.8400 -0.0004 28 1 3.0885 -3.6561 0.0022 29 1 1.8214 -5.7891 0.0048 30 1 -0.6591 -5.7069 0.0051 31 1 -2.6345 -4.3232 -0.0734 32 1 -4.4069 -2.4508 -1.9080 33 1 -4.6431 -3.9700 -1.0327 34 1 -6.8933 -3.4328 -0.4690 35 1 -6.6992 -2.9108 -2.1321 36 1 -7.8992 -1.2745 -0.5916 37 1 -6.5892 -0.6255 -1.5877 38 1 -6.2246 -0.8398 2.5460 39 1 -7.7070 -1.3660 1.7342 40 1 -6.3264 -3.1841 2.8458 41 1 -6.7673 -3.4992 1.1763 42 1 -4.4598 -4.0927 1.3559 43 1 -4.0844 -2.6668 2.3347 44 1 -4.2425 -0.3543 1.2155 45 1 -4.3863 -0.2688 -0.5588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922158607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:07 Heat of formation + Delta-G solvation = -0.528187 kcal Electronic energy + Delta-G solvation = -27596.511136 eV Core-core repulsion = 23999.172742 eV Total energy + Delta-G solvation = -3597.338394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10621 -40.44300 -38.94705 -35.95880 -34.98642 -34.25709 -34.01115 -32.23411 -31.72823 -30.78877 -27.53260 -27.35160 -25.48325 -24.26899 -23.45326 -22.85051 -22.39398 -20.92777 -19.66862 -19.36617 -18.09881 -17.71224 -16.66761 -16.51607 -16.28893 -16.02164 -15.90693 -15.66845 -15.53824 -15.09969 -14.79186 -14.67681 -14.26512 -13.99888 -13.84916 -13.71183 -13.47036 -13.36223 -12.89021 -12.74374 -12.58506 -12.47122 -12.43583 -12.34111 -12.31598 -11.93340 -11.81609 -11.73703 -11.62764 -11.48580 -10.87075 -10.73432 -10.44316 -9.90945 -9.12462 -8.95762 -8.82432 -8.05922 -6.43373 0.90820 1.24131 1.38280 1.49869 1.52429 2.14245 2.25112 2.29463 2.98403 3.06297 3.55606 3.64220 3.67215 3.98659 4.03877 4.08826 4.11574 4.23297 4.24896 4.38122 4.41285 4.51938 4.54094 4.66864 4.75231 4.85970 4.89114 4.94462 4.96943 5.00055 5.01685 5.03874 5.08472 5.09825 5.13326 5.19089 5.28193 5.30384 5.48142 5.66996 5.84917 5.91201 6.13862 6.16402 6.36196 6.43372 6.73235 6.83566 7.07135 7.70081 8.33994 8.55563 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.004699 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.359634 B = 5956.908805 C = 7238.973734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.689 5.689 2 C 0.012 3.988 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.466 4.466 8 H 0.085 0.915 9 C 0.236 3.764 10 C -0.330 4.330 11 C -0.034 4.034 12 C -0.348 4.348 13 C 0.348 3.652 14 N -0.653 5.653 15 C 0.471 3.529 16 O -0.459 6.459 17 C -0.087 4.087 18 C -0.097 4.097 19 C -0.142 4.142 20 C 0.063 3.937 21 N -0.553 5.553 22 C 0.062 3.938 23 C -0.143 4.143 24 C -0.096 4.096 25 C 0.102 3.898 26 N -0.507 5.507 27 H 0.270 0.730 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.415 0.585 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.039 0.961 44 H 0.055 0.945 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.327 -6.058 0.697 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.308 5.308 2 C -0.214 4.214 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.497 4.497 8 H 0.103 0.897 9 C 0.111 3.889 10 C -0.353 4.353 11 C -0.058 4.058 12 C -0.373 4.373 13 C 0.110 3.890 14 N -0.301 5.301 15 C 0.254 3.746 16 O -0.325 6.325 17 C -0.092 4.092 18 C -0.135 4.135 19 C -0.181 4.181 20 C -0.065 4.065 21 N -0.274 5.274 22 C -0.065 4.065 23 C -0.182 4.182 24 C -0.134 4.134 25 C -0.027 4.027 26 N -0.227 5.227 27 H 0.080 0.920 28 H 0.122 0.878 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.253 0.747 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.710 -3.828 0.758 18.135 hybrid contribution 1.511 -1.258 -0.134 1.970 sum -16.199 -5.086 0.623 16.990 Atomic orbital electron populations 1.70518 1.07239 1.27951 1.25094 1.27023 0.96019 1.03946 0.94418 0.85347 0.79143 0.76893 0.79171 1.19032 1.19854 1.17924 1.19902 0.94426 0.90487 1.44882 0.89678 1.18894 0.88030 0.93377 0.88623 1.21807 0.99177 0.93867 1.20462 1.21026 0.93558 0.97305 0.93953 1.20969 0.95211 0.95727 1.25439 1.19195 0.85330 0.91063 0.93459 1.43449 1.03402 1.10447 1.72849 1.21834 0.90794 0.84048 0.77882 1.91132 1.66756 1.32603 1.41986 1.21213 0.89311 1.00172 0.98498 1.21275 0.96889 1.00976 0.94372 1.21920 0.93574 0.98806 1.03802 1.21859 0.99522 0.93690 0.91416 1.60229 1.04886 1.58506 1.03734 1.21889 1.01300 0.92419 0.90907 1.21950 0.94056 0.98596 1.03561 1.21258 0.97665 1.00131 0.94351 1.21458 0.87495 0.92410 1.01357 1.68679 1.07266 1.25364 1.21354 0.91956 0.87819 0.84586 0.85238 0.74748 0.93897 0.90383 0.89458 0.90463 0.88540 0.91961 0.92128 0.88436 0.90501 0.89372 0.90440 0.94222 0.92671 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.51 8.99 21.84 0.20 -40.31 16 2 C 0.01 0.64 5.50 85.29 0.47 1.11 16 3 Si 0.97 41.66 29.56 68.60 2.03 43.69 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.47 -27.13 9.14 23.47 0.21 -26.91 16 8 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 9 C 0.24 13.96 6.55 40.21 0.26 14.22 16 10 C -0.33 -17.06 9.83 22.87 0.22 -16.83 16 11 C -0.03 -1.52 10.15 22.40 0.23 -1.30 16 12 C -0.35 -15.20 9.95 22.71 0.23 -14.97 16 13 C 0.35 17.25 7.43 133.23 0.99 18.24 16 14 N -0.65 -25.81 5.19 -307.57 -1.60 -27.41 16 15 C 0.47 19.41 6.31 87.91 0.55 19.96 16 16 O -0.46 -24.21 11.69 -3.00 -0.04 -24.24 16 17 C -0.09 -2.50 0.57 -52.97 -0.03 -2.53 16 18 C -0.10 -2.25 4.50 30.13 0.14 -2.12 16 19 C -0.14 -2.34 5.10 30.04 0.15 -2.19 16 20 C 0.06 1.15 5.76 86.24 0.50 1.65 16 21 N -0.55 -12.97 4.79 -902.26 -4.32 -17.29 16 22 C 0.06 1.17 5.77 86.27 0.50 1.67 16 23 C -0.14 -2.41 5.15 30.09 0.16 -2.25 16 24 C -0.10 -2.28 4.52 30.14 0.14 -2.14 16 25 C 0.10 3.20 4.18 86.43 0.36 3.56 16 26 N -0.51 -29.74 5.74 -186.36 -1.07 -30.80 16 27 H 0.27 15.01 8.29 -92.71 -0.77 14.24 16 28 H 0.10 5.00 8.06 -2.91 -0.02 4.97 16 29 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 30 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 31 H 0.42 12.42 7.84 -92.71 -0.73 11.70 16 32 H 0.04 1.19 8.14 -2.01 -0.02 1.17 16 33 H 0.08 1.55 7.70 -2.01 -0.02 1.53 16 34 H 0.09 1.12 5.73 -2.52 -0.01 1.11 16 35 H 0.08 1.08 8.27 -1.51 -0.01 1.07 16 36 H 0.10 1.30 8.10 -2.01 -0.02 1.29 16 37 H 0.06 1.26 8.20 -2.03 -0.02 1.24 16 38 H 0.06 1.27 8.19 -2.05 -0.02 1.25 16 39 H 0.10 1.34 8.10 -2.08 -0.02 1.32 16 40 H 0.08 1.11 8.27 -1.58 -0.01 1.10 16 41 H 0.09 1.16 5.66 -2.55 -0.01 1.15 16 42 H 0.08 1.59 7.93 -2.02 -0.02 1.58 16 43 H 0.04 1.14 8.14 -2.01 -0.02 1.13 16 44 H 0.05 2.01 8.07 -2.46 -0.02 1.99 16 45 H 0.06 2.06 8.08 -2.44 -0.02 2.04 16 Total: -1.00 -74.65 344.45 0.58 -74.07 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.31 Total: 33.15 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 5.07 Total: -10.85 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -6.79 Total: -115.81 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.04 Total: -24.24 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -74.65 0.58 -74.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922158607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.537 kcal (2) G-P(sol) polarization free energy of solvation -74.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds