Wall clock time and date at job start Tue Mar 31 2020 10:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48501 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47217 * 300.00580 * 3 2 1 6 6 H 1.48498 * 109.47064 * 60.00405 * 3 2 1 7 7 C 1.38817 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99460 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.46609 * 125.31730 * 180.02562 * 9 7 2 11 11 C 1.53393 * 108.11064 * 178.65256 * 10 9 7 12 12 H 1.08998 * 110.26451 * 225.15324 * 11 10 9 13 13 C 1.51150 * 110.93793 * 102.74195 * 11 10 9 14 14 C 1.51717 * 111.88870 * 156.74697 * 13 11 10 15 15 N 1.43507 * 114.25534 * 82.64721 * 14 13 11 16 16 C 1.34777 * 122.55198 * 122.92852 * 15 14 13 17 17 O 1.21548 * 120.00219 * 176.14908 * 16 15 14 18 18 C 1.47839 * 120.00005 * 356.14031 * 16 15 14 19 19 C 1.40029 * 120.55799 * 50.14517 * 18 16 15 20 20 C 1.38352 * 118.29210 * 179.97438 * 19 18 16 21 21 C 1.38355 * 119.29956 * 0.02562 * 20 19 18 22 22 N 1.31928 * 121.08311 * 0.02562 * 21 20 19 23 23 C 1.31695 * 121.87699 * 359.65338 * 22 21 20 24 24 C 1.49545 * 114.89865 * 302.93781 * 15 14 13 25 25 C 1.52913 * 105.32413 * 70.19663 * 24 15 14 26 26 C 1.51854 * 111.77528 * 258.91779 * 25 24 15 27 27 H 1.08996 * 110.53227 * 298.02586 * 26 25 24 28 28 C 1.46657 * 125.32083 * 359.97438 * 9 7 2 29 29 H 0.96999 * 120.00276 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.74427 * 58.97360 * 10 9 7 31 31 H 1.08999 * 109.74081 * 298.32263 * 10 9 7 32 32 H 1.09006 * 108.99408 * 36.12188 * 13 11 10 33 33 H 1.09006 * 108.93434 * 277.32832 * 13 11 10 34 34 H 1.08998 * 108.52885 * 321.40461 * 14 13 11 35 35 H 1.09004 * 108.40571 * 203.78965 * 14 13 11 36 36 H 1.08007 * 120.85217 * 0.02936 * 19 18 16 37 37 H 1.07995 * 120.35062 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.45983 * 179.97438 * 21 20 19 39 39 H 1.07995 * 119.71927 * 180.31940 * 23 22 21 40 40 H 1.08999 * 110.27011 * 311.24421 * 24 15 14 41 41 H 1.09005 * 110.38724 * 189.20673 * 24 15 14 42 42 H 1.08993 * 109.01353 * 19.49079 * 25 24 15 43 43 H 1.08999 * 109.01006 * 138.35424 * 25 24 15 44 44 H 1.08998 * 109.96958 * 317.65187 * 28 9 7 45 45 H 1.09007 * 109.96660 * 78.87219 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.9378 -3.7202 -0.0005 11 6 0.8125 -4.7621 0.0337 12 1 1.0408 -5.5406 0.7617 13 6 0.5983 -5.3710 -1.3330 14 6 -0.0568 -6.7367 -1.2474 15 7 -1.4850 -6.6981 -1.1121 16 6 -2.3126 -7.3119 -1.9808 17 8 -3.5120 -7.3085 -1.7835 18 6 -1.7617 -7.9893 -3.1738 19 6 -0.7051 -8.8999 -3.0511 20 6 -0.2262 -9.5072 -4.1983 21 6 -0.8006 -9.1979 -5.4183 22 7 -1.7948 -8.3350 -5.5039 23 6 -2.2892 -7.7359 -4.4404 24 6 -1.9850 -5.9247 0.0662 25 6 -1.6917 -4.4594 -0.2582 26 6 -0.4512 -3.9606 0.4616 27 1 -0.5898 -4.0105 1.5416 28 6 -0.1347 -2.5240 0.0005 29 1 -0.4850 0.8400 0.0004 30 1 2.5720 -3.8340 0.8786 31 1 2.5338 -3.8515 -0.9037 32 1 1.5623 -5.4704 -1.8321 33 1 -0.0380 -4.7083 -1.9197 34 1 0.3582 -7.2668 -0.3902 35 1 0.1904 -7.2943 -2.1508 36 1 -0.2756 -9.1231 -2.0856 37 1 0.5874 -10.2151 -4.1420 38 1 -0.4286 -9.6702 -6.3156 39 1 -3.1070 -7.0391 -4.5501 40 1 -1.4530 -6.2254 0.9687 41 1 -3.0571 -6.0761 0.1925 42 1 -1.5440 -4.3564 -1.3332 43 1 -2.5450 -3.8515 0.0424 44 1 -0.5750 -1.8049 0.6913 45 1 -0.5244 -2.3612 -1.0044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946449227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:38 Heat of formation + Delta-G solvation = 41.143459 kcal Electronic energy + Delta-G solvation = -26813.192520 eV Core-core repulsion = 23217.661144 eV Total energy + Delta-G solvation = -3595.531376 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07863 -39.75279 -38.41441 -36.01520 -33.56129 -32.86113 -32.21089 -31.57067 -30.64197 -27.68705 -27.42782 -25.09834 -23.99523 -23.92826 -22.97137 -22.41103 -20.16548 -19.92010 -18.38206 -17.67950 -17.33899 -16.93957 -16.73778 -16.18165 -15.30904 -15.10100 -14.78911 -14.37396 -14.18758 -13.87656 -13.83048 -13.69417 -13.50006 -13.04446 -12.90532 -12.58325 -12.44405 -12.30616 -11.75411 -11.48501 -11.23728 -11.17813 -10.94489 -10.82658 -10.69761 -10.38186 -10.17584 -10.03757 -9.98852 -9.77500 -9.67914 -9.65791 -9.50387 -9.39546 -8.72430 -8.58181 -6.81845 -5.67858 -3.06687 0.49502 0.85999 2.48231 2.83234 3.38725 3.44260 3.46794 3.47396 4.06233 4.33831 4.43566 4.48620 4.49056 4.69600 4.75175 4.95854 5.01359 5.10707 5.26548 5.30619 5.34804 5.38680 5.48272 5.55055 5.62005 5.63856 5.68391 5.73039 5.82192 5.95460 6.04519 6.12936 6.24535 6.29815 6.34995 6.41058 6.55172 6.60878 6.65932 6.76375 7.00864 7.35120 7.55123 7.58253 7.65343 7.86024 7.96057 8.34545 9.23418 9.84356 10.48103 11.38021 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.003208 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.448219 B = 8726.244774 C = 9052.476370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.142 3.858 11 C -0.092 4.092 12 H 0.066 0.934 13 C -0.128 4.128 14 C 0.099 3.901 15 N -0.599 5.599 16 C 0.570 3.430 17 O -0.533 6.533 18 C -0.174 4.174 19 C -0.046 4.046 20 C -0.177 4.177 21 C 0.115 3.885 22 N -0.484 5.484 23 C 0.151 3.849 24 C 0.115 3.885 25 C -0.127 4.127 26 C -0.108 4.108 27 H 0.068 0.932 28 C 0.170 3.830 29 H 0.251 0.749 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 -20.006 -4.624 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.016 3.984 11 C -0.111 4.111 12 H 0.084 0.916 13 C -0.166 4.166 14 C -0.026 4.026 15 N -0.331 5.331 16 C 0.357 3.643 17 O -0.410 6.410 18 C -0.179 4.179 19 C -0.073 4.073 20 C -0.197 4.197 21 C -0.042 4.042 22 N -0.192 5.192 23 C -0.007 4.007 24 C -0.006 4.006 25 C -0.165 4.165 26 C -0.128 4.128 27 H 0.086 0.914 28 C 0.045 3.955 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.177 0.823 39 H 0.181 0.819 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -1.559 -19.600 -5.359 20.379 hybrid contribution 1.066 0.726 0.804 1.519 sum -0.493 -18.875 -4.556 19.423 Atomic orbital electron populations 1.69902 1.04850 1.24703 1.57472 1.24796 0.95727 0.97704 1.02348 0.86030 0.78672 0.83734 0.77254 1.20544 1.21769 1.21747 1.19110 0.90513 0.82500 1.43243 0.90487 1.44203 1.01859 0.99907 1.86854 1.21121 0.93646 0.85932 0.97676 1.21764 0.96705 0.97053 0.95537 0.91579 1.21484 1.00955 0.95456 0.98679 1.21067 0.80317 0.98817 1.02359 1.47960 1.06940 1.51667 1.26538 1.17980 0.85976 0.78462 0.81898 1.90801 1.14479 1.60603 1.75147 1.20980 0.99495 1.01522 0.95926 1.21783 0.92657 0.93003 0.99818 1.22117 1.02262 1.01984 0.93333 1.23010 0.91063 0.92515 0.97653 1.67785 1.11193 1.07977 1.32289 1.22908 0.96370 0.95287 0.86139 1.22364 1.00727 0.90822 0.86687 1.21870 0.98703 0.94079 1.01854 1.22429 0.92473 0.98868 0.99040 0.91390 1.21443 0.84458 0.90275 0.99345 0.93827 0.96251 0.96234 0.90983 0.90476 0.91702 0.90427 0.84033 0.84010 0.82255 0.81896 0.90171 0.89218 0.90803 0.91223 0.89285 0.96785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 10.16 55.49 0.56 -26.20 16 2 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.23 -6.24 10.25 -15.06 -0.15 -6.39 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.12 3.38 -172.07 -0.58 -15.70 16 10 C 0.14 2.84 6.82 -3.78 -0.03 2.82 16 11 C -0.09 -1.44 2.78 -89.94 -0.25 -1.69 16 12 H 0.07 0.90 7.68 -51.93 -0.40 0.50 16 13 C -0.13 -1.73 4.77 -28.31 -0.14 -1.87 16 14 C 0.10 1.06 4.96 -6.28 -0.03 1.03 16 15 N -0.60 -7.43 2.61 -175.43 -0.46 -7.89 16 16 C 0.57 7.73 7.32 -12.33 -0.09 7.64 16 17 O -0.53 -8.94 16.73 5.32 0.09 -8.85 16 18 C -0.17 -1.98 5.11 -104.82 -0.54 -2.52 16 19 C -0.05 -0.40 7.59 -38.87 -0.29 -0.69 16 20 C -0.18 -1.26 10.10 -39.50 -0.40 -1.66 16 21 C 0.11 0.95 11.17 -17.47 -0.20 0.76 16 22 N -0.48 -5.46 10.35 -12.91 -0.13 -5.59 16 23 C 0.15 1.77 10.90 -17.13 -0.19 1.58 16 24 C 0.11 1.47 6.17 -2.39 -0.01 1.45 16 25 C -0.13 -1.93 4.50 -27.36 -0.12 -2.05 16 26 C -0.11 -1.89 2.93 -89.19 -0.26 -2.15 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 C 0.17 3.99 5.13 -3.35 -0.02 3.98 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.39 7.40 -51.93 -0.38 0.01 16 32 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 33 H 0.08 1.24 5.86 -51.93 -0.30 0.94 16 34 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 35 H 0.08 0.73 4.33 -51.93 -0.22 0.51 16 36 H 0.14 0.95 7.11 -52.48 -0.37 0.58 16 37 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.08 0.91 7.81 -51.93 -0.41 0.50 16 41 H 0.09 1.18 7.31 -51.93 -0.38 0.80 16 42 H 0.07 1.23 5.48 -51.93 -0.28 0.95 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.09 2.40 6.20 -51.93 -0.32 2.08 16 45 H 0.01 0.37 7.72 -51.93 -0.40 -0.04 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -32.82 346.91 -9.47 -42.30 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.35 Total: -0.13 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.81 Total: -0.15 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.61 Total: -55.38 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.82 -9.47 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946449227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.439 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds