Wall clock time and date at job start Tue Mar 31 2020 10:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48501 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47217 * 300.00580 * 3 2 1 6 6 H 1.48498 * 109.47064 * 60.00405 * 3 2 1 7 7 C 1.38817 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99460 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.46609 * 125.31730 * 180.02562 * 9 7 2 11 11 C 1.53393 * 108.11064 * 178.65256 * 10 9 7 12 12 H 1.08998 * 110.26451 * 225.15324 * 11 10 9 13 13 C 1.51150 * 110.93793 * 102.74195 * 11 10 9 14 14 C 1.51717 * 111.88870 * 156.74697 * 13 11 10 15 15 N 1.43507 * 114.25534 * 82.64721 * 14 13 11 16 16 C 1.34777 * 122.55198 * 122.92852 * 15 14 13 17 17 O 1.21548 * 120.00219 * 176.14908 * 16 15 14 18 18 C 1.47839 * 120.00005 * 356.14031 * 16 15 14 19 19 C 1.40029 * 120.55799 * 50.14517 * 18 16 15 20 20 C 1.38352 * 118.29210 * 179.97438 * 19 18 16 21 21 C 1.38355 * 119.29956 * 0.02562 * 20 19 18 22 22 N 1.31928 * 121.08311 * 0.02562 * 21 20 19 23 23 C 1.31695 * 121.87699 * 359.65338 * 22 21 20 24 24 C 1.49545 * 114.89865 * 302.93781 * 15 14 13 25 25 C 1.52913 * 105.32413 * 70.19663 * 24 15 14 26 26 C 1.51854 * 111.77528 * 258.91779 * 25 24 15 27 27 H 1.08996 * 110.53227 * 298.02586 * 26 25 24 28 28 C 1.46657 * 125.32083 * 359.97438 * 9 7 2 29 29 H 0.96999 * 120.00276 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.74427 * 58.97360 * 10 9 7 31 31 H 1.08999 * 109.74081 * 298.32263 * 10 9 7 32 32 H 1.09006 * 108.99408 * 36.12188 * 13 11 10 33 33 H 1.09006 * 108.93434 * 277.32832 * 13 11 10 34 34 H 1.08998 * 108.52885 * 321.40461 * 14 13 11 35 35 H 1.09004 * 108.40571 * 203.78965 * 14 13 11 36 36 H 1.08007 * 120.85217 * 0.02936 * 19 18 16 37 37 H 1.07995 * 120.35062 * 180.02562 * 20 19 18 38 38 H 1.08004 * 119.45983 * 179.97438 * 21 20 19 39 39 H 1.07995 * 119.71927 * 180.31940 * 23 22 21 40 40 H 1.08999 * 110.27011 * 311.24421 * 24 15 14 41 41 H 1.09005 * 110.38724 * 189.20673 * 24 15 14 42 42 H 1.08993 * 109.01353 * 19.49079 * 25 24 15 43 43 H 1.08999 * 109.01006 * 138.35424 * 25 24 15 44 44 H 1.08998 * 109.96958 * 317.65187 * 28 9 7 45 45 H 1.09007 * 109.96660 * 78.87219 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.9378 -3.7202 -0.0005 11 6 0.8125 -4.7621 0.0337 12 1 1.0408 -5.5406 0.7617 13 6 0.5983 -5.3710 -1.3330 14 6 -0.0568 -6.7367 -1.2474 15 7 -1.4850 -6.6981 -1.1121 16 6 -2.3126 -7.3119 -1.9808 17 8 -3.5120 -7.3085 -1.7835 18 6 -1.7617 -7.9893 -3.1738 19 6 -0.7051 -8.8999 -3.0511 20 6 -0.2262 -9.5072 -4.1983 21 6 -0.8006 -9.1979 -5.4183 22 7 -1.7948 -8.3350 -5.5039 23 6 -2.2892 -7.7359 -4.4404 24 6 -1.9850 -5.9247 0.0662 25 6 -1.6917 -4.4594 -0.2582 26 6 -0.4512 -3.9606 0.4616 27 1 -0.5898 -4.0105 1.5416 28 6 -0.1347 -2.5240 0.0005 29 1 -0.4850 0.8400 0.0004 30 1 2.5720 -3.8340 0.8786 31 1 2.5338 -3.8515 -0.9037 32 1 1.5623 -5.4704 -1.8321 33 1 -0.0380 -4.7083 -1.9197 34 1 0.3582 -7.2668 -0.3902 35 1 0.1904 -7.2943 -2.1508 36 1 -0.2756 -9.1231 -2.0856 37 1 0.5874 -10.2151 -4.1420 38 1 -0.4286 -9.6702 -6.3156 39 1 -3.1070 -7.0391 -4.5501 40 1 -1.4530 -6.2254 0.9687 41 1 -3.0571 -6.0761 0.1925 42 1 -1.5440 -4.3564 -1.3332 43 1 -2.5450 -3.8515 0.0424 44 1 -0.5750 -1.8049 0.6913 45 1 -0.5244 -2.3612 -1.0044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946449227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:38 Heat of formation + Delta-G solvation = 20.515266 kcal Electronic energy + Delta-G solvation = -26814.087026 eV Core-core repulsion = 23217.661144 eV Total energy + Delta-G solvation = -3596.425882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.99595 -40.76677 -39.63728 -37.37335 -35.01581 -34.08289 -33.18793 -32.51116 -32.22066 -29.15148 -28.90725 -26.45226 -25.26724 -24.81558 -24.10435 -23.48978 -21.95449 -20.87619 -19.74141 -18.95730 -18.56806 -18.04763 -17.58397 -17.16276 -16.88188 -16.39579 -16.05596 -15.53265 -15.47687 -14.98644 -14.84510 -14.75587 -14.59588 -14.35444 -14.12873 -13.84891 -13.67908 -13.37934 -13.17312 -13.04811 -12.86112 -12.73257 -12.51691 -12.35089 -12.10169 -11.83644 -11.77779 -11.46142 -11.25206 -11.17250 -11.01380 -10.74933 -10.70474 -10.46154 -10.19582 -9.72267 -8.86014 -7.80041 -5.21275 -0.23096 0.19944 1.44634 1.45401 1.48876 1.55857 1.89983 2.48807 2.75642 3.30648 3.31796 3.54710 3.68305 3.70002 3.80706 3.83616 3.90193 3.95798 4.04184 4.10680 4.17943 4.25294 4.44055 4.49161 4.63848 4.67571 4.70678 4.72128 4.74691 4.91826 4.96657 5.00194 5.05569 5.06451 5.11714 5.12322 5.21512 5.28315 5.43452 5.49197 5.62062 5.62594 5.75531 5.85410 6.29177 6.38252 6.87729 6.96340 7.12494 7.82853 8.43749 9.23828 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.003208 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.448219 B = 8726.244774 C = 9052.476370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.082 0.918 9 N -0.626 5.626 10 C 0.133 3.867 11 C -0.078 4.078 12 H 0.108 0.892 13 C -0.121 4.121 14 C 0.101 3.899 15 N -0.596 5.596 16 C 0.569 3.431 17 O -0.576 6.576 18 C -0.191 4.191 19 C -0.044 4.044 20 C -0.160 4.160 21 C 0.108 3.892 22 N -0.511 5.511 23 C 0.129 3.871 24 C 0.123 3.877 25 C -0.116 4.116 26 C -0.095 4.095 27 H 0.077 0.923 28 C 0.179 3.821 29 H 0.244 0.756 30 H 0.026 0.974 31 H 0.023 0.977 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.169 0.831 37 H 0.184 0.816 38 H 0.191 0.809 39 H 0.148 0.852 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.047 0.953 45 H -0.025 1.025 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.097 -23.357 -4.270 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.222 1.222 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.100 0.900 9 N -0.352 5.352 10 C 0.009 3.991 11 C -0.096 4.096 12 H 0.126 0.874 13 C -0.160 4.160 14 C -0.022 4.022 15 N -0.327 5.327 16 C 0.358 3.642 17 O -0.456 6.456 18 C -0.196 4.196 19 C -0.070 4.070 20 C -0.180 4.180 21 C -0.048 4.048 22 N -0.220 5.220 23 C -0.028 4.028 24 C 0.002 3.998 25 C -0.155 4.155 26 C -0.114 4.114 27 H 0.096 0.904 28 C 0.053 3.947 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.186 0.814 37 H 0.201 0.799 38 H 0.207 0.793 39 H 0.166 0.834 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.065 0.935 45 H -0.007 1.007 Dipole moment (debyes) X Y Z Total from point charges 1.103 -22.980 -5.003 23.545 hybrid contribution 0.324 1.765 0.617 1.897 sum 1.427 -21.216 -4.386 21.711 Atomic orbital electron populations 1.70177 1.06289 1.24818 1.58722 1.25651 0.96593 1.01068 1.02844 0.85011 0.78252 0.79470 0.76632 1.18834 1.22225 1.21835 1.19513 0.91063 0.83924 1.42307 0.90024 1.44545 1.02643 1.01320 1.86649 1.21405 0.95189 0.84668 0.97876 1.21766 0.93455 0.96525 0.97874 0.87442 1.21418 1.01323 0.96384 0.96834 1.21169 0.78916 0.97199 1.04962 1.47986 1.07739 1.50918 1.26034 1.18350 0.85482 0.78158 0.82241 1.90771 1.16362 1.62397 1.76089 1.20842 1.01198 1.03063 0.94481 1.22124 0.91427 0.91779 1.01686 1.22555 1.02202 1.01262 0.91932 1.23657 0.89985 0.91436 0.99741 1.67771 1.12732 1.09246 1.32263 1.22783 0.96906 0.96164 0.86986 1.22268 1.01035 0.88644 0.87893 1.21730 0.97251 0.96176 1.00308 1.22239 0.94427 0.95158 0.99587 0.90415 1.21154 0.83859 0.93464 0.96198 0.94607 0.95569 0.95887 0.89665 0.93898 0.88203 0.88494 0.81366 0.79859 0.79259 0.83433 0.87308 0.89791 0.92717 0.92410 0.93456 1.00710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.97 10.16 21.65 0.22 -57.75 16 2 C -0.07 -3.98 5.48 84.86 0.47 -3.51 16 3 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.24 -13.47 10.25 84.04 0.86 -12.60 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.63 -32.01 3.38 -698.30 -2.36 -34.36 16 10 C 0.13 5.14 6.82 86.49 0.59 5.73 16 11 C -0.08 -2.22 2.78 -10.36 -0.03 -2.25 16 12 H 0.11 2.31 7.68 -2.39 -0.02 2.29 16 13 C -0.12 -3.00 4.77 29.57 0.14 -2.86 16 14 C 0.10 1.76 4.96 86.51 0.43 2.19 16 15 N -0.60 -13.54 2.61 -827.22 -2.16 -15.71 16 16 C 0.57 15.04 7.32 86.78 0.64 15.68 16 17 O -0.58 -19.73 16.73 -3.87 -0.06 -19.80 16 18 C -0.19 -4.11 5.11 -19.99 -0.10 -4.21 16 19 C -0.04 -0.59 7.59 22.73 0.17 -0.42 16 20 C -0.16 -1.54 10.10 22.32 0.23 -1.31 16 21 C 0.11 1.48 11.17 84.71 0.95 2.43 16 22 N -0.51 -11.13 10.35 -194.75 -2.01 -13.14 16 23 C 0.13 3.08 10.90 85.02 0.93 4.00 16 24 C 0.12 2.93 6.17 85.76 0.53 3.45 16 25 C -0.12 -3.58 4.50 30.19 0.14 -3.45 16 26 C -0.09 -3.26 2.93 -9.87 -0.03 -3.29 16 27 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 28 C 0.18 8.81 5.13 86.74 0.44 9.26 16 29 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.02 0.88 7.40 -2.39 -0.02 0.86 16 32 H 0.08 1.92 7.53 -2.38 -0.02 1.90 16 33 H 0.04 1.38 5.86 -2.38 -0.01 1.36 16 34 H 0.10 1.19 7.68 -2.39 -0.02 1.17 16 35 H 0.10 1.39 4.33 -2.39 -0.01 1.38 16 36 H 0.17 1.31 7.11 -2.91 -0.02 1.29 16 37 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 38 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 40 H 0.11 2.03 7.81 -2.39 -0.02 2.01 16 41 H 0.08 2.16 7.31 -2.38 -0.02 2.14 16 42 H 0.05 1.91 5.48 -2.39 -0.01 1.90 16 43 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.05 2.72 6.20 -2.39 -0.01 2.70 16 45 H -0.03 -1.40 7.72 -2.38 -0.02 -1.42 16 Total: -1.00 -77.68 346.91 2.99 -74.69 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.00 Total: 8.98 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 6.34 Total: 8.84 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -6.31 Total: -120.96 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.06 Total: -19.80 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -77.68 2.99 -74.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946449227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.209 kcal (2) G-P(sol) polarization free energy of solvation -77.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds