Wall clock time and date at job start Tue Mar 31 2020 10:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48497 * 109.47218 * 239.99598 * 3 2 1 5 5 H 1.48500 * 109.47316 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46900 * 119.99936 * 3 2 1 7 7 C 1.38814 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99782 * 179.97438 * 9 7 2 11 11 C 1.53957 * 113.58030 * 205.00320 * 10 9 7 12 12 C 1.52917 * 86.77928 * 220.66444 * 11 10 9 13 13 C 1.52909 * 88.04253 * 24.89691 * 12 11 10 14 14 C 1.52910 * 121.13486 * 259.17796 * 12 11 10 15 15 C 1.53949 * 86.78077 * 209.38575 * 14 12 11 16 16 N 1.46510 * 113.57798 * 270.13214 * 15 14 12 17 17 C 1.34781 * 119.99912 * 252.72120 * 16 15 14 18 18 O 1.21288 * 119.99719 * 359.97438 * 17 16 15 19 19 C 1.50693 * 119.99971 * 179.97438 * 17 16 15 20 20 C 1.50704 * 109.47047 * 180.02562 * 19 17 16 21 21 C 1.38678 * 120.41455 * 269.72267 * 20 19 17 22 22 C 1.38633 * 118.41676 * 179.78212 * 21 20 19 23 23 C 1.38223 * 119.16160 * 0.46977 * 22 21 20 24 24 N 1.31855 * 120.76299 * 359.77374 * 23 22 21 25 25 C 1.31888 * 121.72573 * 359.97438 * 24 23 22 26 26 C 1.52905 * 121.13340 * 150.61497 * 12 11 10 27 27 H 0.97005 * 120.00007 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00271 * 0.02562 * 9 7 2 29 29 H 1.09001 * 112.88003 * 336.14586 * 10 9 7 30 30 H 1.08997 * 113.66354 * 106.19621 * 11 10 9 31 31 H 1.09002 * 113.65722 * 335.13352 * 11 10 9 32 32 H 1.09001 * 113.66026 * 89.57323 * 13 12 11 33 33 H 1.08998 * 113.66179 * 220.53611 * 13 12 11 34 34 H 1.09006 * 113.66074 * 323.85230 * 14 12 11 35 35 H 1.08994 * 113.66448 * 94.91195 * 14 12 11 36 36 H 1.08998 * 113.58530 * 139.33977 * 15 14 12 37 37 H 0.96994 * 119.99990 * 72.71685 * 16 15 14 38 38 H 1.08994 * 109.47195 * 300.00073 * 19 17 16 39 39 H 1.08997 * 109.47103 * 60.00140 * 19 17 16 40 40 H 1.07998 * 120.79456 * 0.02562 * 21 20 19 41 41 H 1.08005 * 120.41677 * 180.22182 * 22 21 20 42 42 H 1.07994 * 119.61893 * 179.79331 * 23 22 21 43 43 H 1.07998 * 119.61373 * 180.02562 * 25 24 23 44 44 H 1.08990 * 113.66878 * 265.09053 * 26 12 11 45 45 H 1.09000 * 113.66430 * 36.05678 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.2585 -4.8290 -0.6002 12 6 1.8333 -5.6841 0.5298 13 6 2.0030 -4.4009 1.3439 14 6 3.0117 -6.6276 0.2863 15 6 2.4295 -7.5045 1.4098 16 7 2.9331 -7.1609 2.7420 17 6 3.8077 -7.9771 3.3630 18 8 4.1774 -8.9962 2.8190 19 6 4.3261 -7.6234 4.7330 20 6 5.2818 -8.6912 5.1995 21 6 4.8185 -9.7820 5.9198 22 6 5.7332 -10.7420 6.3244 23 6 7.0683 -10.5764 6.0073 24 7 7.4737 -9.5235 5.3249 25 6 6.6313 -8.5932 4.9196 26 6 1.0599 -6.8787 1.0890 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 -0.0023 29 1 3.0653 -3.5642 -0.4088 30 1 1.5973 -5.1293 -1.5917 31 1 0.1782 -4.6962 -0.5422 32 1 1.1318 -4.1478 1.9482 33 1 2.9356 -4.3598 1.9065 34 1 2.9951 -7.1043 -0.6938 35 1 3.9799 -6.1903 0.5299 36 1 2.4807 -8.5729 1.2000 37 1 2.6372 -6.3461 3.1771 38 1 4.8451 -6.6659 4.6891 39 1 3.4913 -7.5526 5.4303 40 1 3.7697 -9.8832 6.1565 41 1 5.4071 -11.6065 6.8839 42 1 7.7876 -11.3180 6.3217 43 1 7.0006 -7.7449 4.3624 44 1 0.4691 -6.6421 1.9737 45 1 0.4936 -7.4251 0.3348 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963680574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:28 Heat of formation + Delta-G solvation = 28.930969 kcal Electronic energy + Delta-G solvation = -25158.741371 eV Core-core repulsion = 21562.680421 eV Total energy + Delta-G solvation = -3596.060949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.84053 -41.15560 -39.93253 -37.19925 -35.12018 -34.56193 -33.50590 -32.77347 -31.44960 -28.93264 -26.74269 -26.54711 -26.12793 -24.50139 -24.24726 -23.11728 -21.56827 -21.13961 -19.38827 -18.70566 -18.20556 -17.95149 -17.42246 -17.04085 -16.89425 -16.11948 -16.02810 -15.88919 -15.65469 -15.19665 -15.12300 -14.70099 -14.26423 -14.18725 -13.93466 -13.90918 -13.65312 -13.39744 -13.14341 -12.98381 -12.88968 -12.79402 -12.45680 -12.38251 -12.20441 -12.10635 -11.80865 -11.21864 -11.05150 -11.00596 -10.82106 -10.67815 -10.63343 -10.39824 -9.98485 -9.89532 -8.95247 -7.93370 -5.20941 0.16466 0.37761 1.47939 1.50181 1.56334 1.63219 2.20710 2.57431 2.92522 3.38169 3.51000 3.54243 3.59147 3.71619 3.73362 3.86879 3.94596 3.99961 4.02160 4.10191 4.13570 4.31802 4.37212 4.50142 4.58420 4.63320 4.66063 4.78618 4.86086 4.87895 4.91755 4.97308 5.02062 5.04528 5.11711 5.16747 5.19766 5.25664 5.31492 5.45575 5.56616 5.67508 5.77481 5.80493 6.29231 6.58353 7.04464 7.26996 7.35072 8.13724 8.36157 9.29613 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018769 B = 0.002366 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.429457 B =11832.463494 C =12784.794609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.970 3.030 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.074 0.926 9 N -0.728 5.728 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.090 4.090 13 C -0.129 4.129 14 C -0.125 4.125 15 C 0.127 3.873 16 N -0.701 5.701 17 C 0.517 3.483 18 O -0.581 6.581 19 C -0.095 4.095 20 C -0.123 4.123 21 C -0.073 4.073 22 C -0.170 4.170 23 C 0.078 3.922 24 N -0.517 5.517 25 C 0.090 3.910 26 C -0.120 4.120 27 H 0.250 0.750 28 H 0.373 0.627 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.413 0.587 38 H 0.128 0.872 39 H 0.136 0.864 40 H 0.154 0.846 41 H 0.163 0.837 42 H 0.175 0.825 43 H 0.156 0.844 44 H 0.079 0.921 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.838 -21.866 12.754 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.799 3.201 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.092 0.908 9 N -0.365 5.365 10 C 0.036 3.964 11 C -0.171 4.171 12 C -0.090 4.090 13 C -0.169 4.169 14 C -0.163 4.163 15 C 0.021 3.979 16 N -0.352 5.352 17 C 0.305 3.695 18 O -0.460 6.460 19 C -0.134 4.134 20 C -0.126 4.126 21 C -0.099 4.099 22 C -0.190 4.190 23 C -0.078 4.078 24 N -0.226 5.226 25 C -0.067 4.067 26 C -0.158 4.158 27 H 0.059 0.941 28 H 0.205 0.795 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.250 0.750 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.171 0.829 41 H 0.181 0.819 42 H 0.192 0.808 43 H 0.173 0.827 44 H 0.098 0.902 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.139 -22.350 12.160 26.714 hybrid contribution -1.037 1.523 0.007 1.843 sum 7.103 -20.826 12.167 25.144 Atomic orbital electron populations 1.69802 1.06526 1.26032 1.59653 1.25537 0.96368 1.01007 1.03987 0.85260 0.77223 0.79433 0.78149 1.20643 1.22290 1.20325 1.19640 0.91407 0.85506 1.40845 0.90812 1.42589 1.05323 1.01022 1.87616 1.21901 0.95026 0.83910 0.95584 1.23178 0.99767 0.96169 0.98023 1.22177 0.97418 0.92341 0.97105 1.23331 1.01071 0.94422 0.98113 1.23165 0.97075 0.96483 0.99579 1.21749 0.94960 0.98902 0.82314 1.45689 1.45463 1.26094 1.17987 1.20978 0.77965 0.82673 0.87888 1.90714 1.59241 1.27674 1.68390 1.20676 1.00303 0.99178 0.93291 1.20485 0.95149 0.97616 0.99320 1.21836 1.01363 0.92275 0.94395 1.22461 0.94089 1.00921 1.01517 1.23230 0.95775 0.94881 0.93925 1.67661 1.40192 1.03351 1.11409 1.22827 0.90003 0.97448 0.96396 1.23125 0.95256 0.95681 1.01724 0.94089 0.79458 0.91672 0.91569 0.90906 0.90980 0.91748 0.88272 0.91888 0.89056 0.75007 0.85417 0.84614 0.82867 0.81914 0.80787 0.82669 0.90214 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.63 13.06 21.65 0.28 -58.34 16 2 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 3 Si 0.97 45.60 29.55 68.60 2.03 47.62 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.24 -13.23 9.97 84.03 0.84 -12.39 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.73 -35.81 5.40 -319.92 -1.73 -37.53 16 10 C 0.15 5.44 4.48 45.63 0.20 5.65 16 11 C -0.13 -4.02 7.59 30.89 0.23 -3.78 16 12 C -0.09 -2.15 1.02 -52.31 -0.05 -2.20 16 13 C -0.13 -3.80 6.97 30.88 0.22 -3.59 16 14 C -0.12 -2.73 7.64 30.88 0.24 -2.49 16 15 C 0.13 2.52 4.32 45.63 0.20 2.72 16 16 N -0.70 -12.34 5.26 -439.49 -2.31 -14.65 16 17 C 0.52 10.21 7.82 87.65 0.69 10.89 16 18 O -0.58 -16.70 15.64 -3.05 -0.05 -16.75 16 19 C -0.09 -1.20 5.86 29.10 0.17 -1.02 16 20 C -0.12 -2.14 4.39 -19.77 -0.09 -2.22 16 21 C -0.07 -1.09 9.86 22.47 0.22 -0.87 16 22 C -0.17 -2.37 10.11 22.36 0.23 -2.14 16 23 C 0.08 1.35 11.18 84.69 0.95 2.30 16 24 N -0.52 -11.78 10.36 -195.86 -2.03 -13.81 16 25 C 0.09 1.87 10.86 84.67 0.92 2.79 16 26 C -0.12 -2.28 7.59 30.88 0.23 -2.04 16 27 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 28 H 0.37 19.76 7.92 -92.71 -0.73 19.02 16 29 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 2.32 8.12 -2.39 -0.02 2.30 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.06 1.75 8.08 -2.39 -0.02 1.73 16 34 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 2.02 7.47 -2.39 -0.02 2.00 16 37 H 0.41 5.90 8.00 -92.71 -0.74 5.16 16 38 H 0.13 1.16 8.09 -2.39 -0.02 1.14 16 39 H 0.14 0.92 8.09 -2.39 -0.02 0.90 16 40 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 41 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 44 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.11 1.79 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -73.53 376.85 1.38 -72.16 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: -0.47 Total: 33.61 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 5.66 Total: -12.31 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -5.78 Total: -124.34 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.05 Total: -16.75 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.53 1.38 -72.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963680574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.088 kcal (2) G-P(sol) polarization free energy of solvation -73.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds