Wall clock time and date at job start Tue Mar 31 2020 10:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99476 * 2 1 4 4 H 1.48492 * 109.47064 * 239.99854 * 3 2 1 5 5 H 1.48493 * 109.47464 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46783 * 119.99873 * 3 2 1 7 7 C 1.38806 * 120.00535 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00144 * 191.41209 * 7 2 1 9 9 N 1.36942 * 119.99831 * 11.40955 * 7 2 1 10 10 C 1.43526 * 119.01049 * 208.53660 * 9 7 2 11 11 C 1.53787 * 107.93420 * 273.72245 * 10 9 7 12 12 C 1.47144 * 111.77719 * 281.55960 * 11 10 9 13 13 N 1.48217 * 110.34032 * 58.33608 * 12 11 10 14 14 C 1.34778 * 119.96943 * 102.50653 * 13 12 11 15 15 O 1.21284 * 120.00068 * 356.49346 * 14 13 12 16 16 C 1.50697 * 120.00004 * 176.49572 * 14 13 12 17 17 C 1.50702 * 115.55200 * 286.21027 * 16 14 13 18 18 C 1.38671 * 120.41912 * 328.33151 * 17 16 14 19 19 C 1.38621 * 118.42629 * 180.02562 * 18 17 16 20 20 C 1.38232 * 119.15938 * 359.97438 * 19 18 17 21 21 N 1.31852 * 120.76263 * 359.97438 * 20 19 18 22 22 C 1.31895 * 121.72637 * 359.71210 * 21 20 19 23 23 C 1.52998 * 117.50321 * 140.49872 * 16 14 13 24 24 C 1.52991 * 60.00121 * 252.51265 * 23 16 14 25 25 C 1.43613 * 120.05972 * 282.48118 * 13 12 11 26 26 C 1.48859 * 118.93921 * 28.53011 * 9 7 2 27 27 H 0.96998 * 120.00061 * 4.98783 * 1 2 3 28 28 H 1.09004 * 109.83367 * 154.07753 * 10 9 7 29 29 H 1.09004 * 109.71828 * 33.29950 * 10 9 7 30 30 H 1.09003 * 109.00878 * 160.99623 * 11 10 9 31 31 H 1.08995 * 109.01390 * 42.13118 * 11 10 9 32 32 H 1.09003 * 109.32522 * 178.59822 * 12 11 10 33 33 H 1.08994 * 109.33006 * 298.07005 * 12 11 10 34 34 H 1.08004 * 120.78574 * 0.02562 * 18 17 16 35 35 H 1.07997 * 120.42610 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.61985 * 179.97438 * 20 19 18 37 37 H 1.07999 * 119.61727 * 180.30821 * 22 21 20 38 38 H 1.09004 * 117.49839 * 0.02562 * 23 16 14 39 39 H 1.08995 * 117.50063 * 145.01885 * 23 16 14 40 40 H 1.09000 * 117.49778 * 252.50810 * 24 23 16 41 41 H 1.09003 * 117.50239 * 107.49284 * 24 23 16 42 42 H 1.08990 * 108.87917 * 211.45213 * 25 13 12 43 43 H 1.08999 * 108.87206 * 329.89327 * 25 13 12 44 44 H 1.08997 * 109.47725 * 20.64517 * 26 9 7 45 45 H 1.08995 * 109.48405 * 260.60302 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6966 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0743 -1.2113 0.1845 9 7 1.3460 -2.3762 -0.2357 10 6 1.8512 -3.5894 0.3414 11 6 2.9069 -4.1658 -0.6169 12 6 2.2881 -4.8573 -1.7588 13 7 1.4071 -3.9295 -2.5071 14 6 1.8282 -3.3908 -3.6685 15 8 2.9509 -3.6146 -4.0690 16 6 0.9040 -2.5103 -4.4695 17 6 -0.2046 -3.2247 -5.1986 18 6 -0.0153 -4.5130 -5.6754 19 6 -1.0628 -5.1310 -6.3406 20 6 -2.2530 -4.4476 -6.5048 21 7 -2.3979 -3.2234 -6.0370 22 6 -1.4251 -2.6069 -5.3941 23 6 1.5094 -1.2751 -5.1394 24 6 0.6025 -1.1156 -3.9176 25 6 0.1050 -3.6045 -1.9959 26 6 0.1217 -2.3541 -1.0822 27 1 -0.4850 0.8368 -0.0730 28 1 1.0387 -4.3049 0.4682 29 1 2.3082 -3.3747 1.3074 30 1 3.5336 -4.8716 -0.0717 31 1 3.5300 -3.3527 -0.9894 32 1 3.0693 -5.2272 -2.4229 33 1 1.6992 -5.6991 -1.3948 34 1 0.9260 -5.0228 -5.5320 35 1 -0.9507 -6.1340 -6.7249 36 1 -3.0739 -4.9219 -7.0222 37 1 -1.5825 -1.6058 -5.0209 38 1 2.5762 -1.0995 -5.0010 39 1 1.1059 -0.9791 -6.1077 40 1 -0.3976 -0.7146 -4.0821 41 1 1.0726 -0.8348 -2.9750 42 1 -0.5669 -3.4198 -2.8339 43 1 -0.2716 -4.4533 -1.4250 44 1 0.1215 -1.4544 -1.6975 45 1 -0.7617 -2.3584 -0.4438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981805345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:04 Heat of formation + Delta-G solvation = 51.376370 kcal Electronic energy + Delta-G solvation = -28207.091673 eV Core-core repulsion = 24612.004029 eV Total energy + Delta-G solvation = -3595.087644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.08417 -40.69338 -38.76944 -37.70146 -35.94185 -34.18589 -33.40605 -32.70556 -31.80588 -29.34273 -27.53555 -25.93742 -25.42571 -24.63760 -24.35099 -23.15075 -22.15858 -21.46381 -19.60265 -18.78488 -18.32039 -17.84243 -17.57929 -17.02835 -16.84670 -16.34370 -15.91091 -15.79260 -15.42115 -15.28917 -14.92860 -14.70222 -14.56594 -14.21082 -14.04424 -13.81075 -13.66120 -13.40808 -13.11533 -12.97118 -12.85219 -12.54203 -12.47605 -12.38603 -12.14834 -12.02084 -11.77229 -11.65114 -11.50510 -11.32541 -10.93507 -10.68449 -10.48504 -10.31925 -9.80927 -9.56463 -8.59833 -7.78596 -5.30234 0.08855 0.27834 1.43717 1.46679 1.51327 1.52044 2.01518 2.52512 2.59423 3.00127 3.30124 3.31319 3.44045 3.62119 3.74386 3.78151 3.86464 3.96046 4.05473 4.06205 4.19926 4.28889 4.32342 4.47751 4.49762 4.57922 4.61192 4.68666 4.72023 4.82366 4.88507 4.91552 4.96956 5.02600 5.12425 5.14838 5.23501 5.28976 5.33974 5.47437 5.64445 5.72729 5.78915 5.81839 6.44516 6.49091 6.99463 7.15922 7.22777 7.97536 8.37954 9.21754 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014479 B = 0.005581 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.381797 B = 5015.876698 C = 5759.031331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.029 4.029 3 Si 0.942 3.058 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.258 4.258 8 H 0.047 0.953 9 N -0.602 5.602 10 C 0.157 3.843 11 C -0.154 4.154 12 C 0.125 3.875 13 N -0.575 5.575 14 C 0.555 3.445 15 O -0.584 6.584 16 C -0.116 4.116 17 C -0.089 4.089 18 C -0.078 4.078 19 C -0.156 4.156 20 C 0.090 3.910 21 N -0.498 5.498 22 C 0.097 3.903 23 C -0.132 4.132 24 C -0.151 4.151 25 C 0.095 3.905 26 C 0.160 3.840 27 H 0.250 0.750 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.086 0.914 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.167 0.833 36 H 0.188 0.812 37 H 0.161 0.839 38 H 0.087 0.913 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.079 -11.112 -11.131 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.225 4.225 3 Si 0.771 3.229 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.389 4.389 8 H 0.065 0.935 9 N -0.325 5.325 10 C 0.030 3.970 11 C -0.195 4.195 12 C 0.004 3.996 13 N -0.304 5.304 14 C 0.343 3.657 15 O -0.465 6.465 16 C -0.120 4.120 17 C -0.092 4.092 18 C -0.104 4.104 19 C -0.175 4.175 20 C -0.067 4.067 21 N -0.207 5.207 22 C -0.059 4.059 23 C -0.169 4.169 24 C -0.187 4.187 25 C -0.031 4.031 26 C 0.035 3.965 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.185 0.815 36 H 0.205 0.795 37 H 0.178 0.822 38 H 0.106 0.894 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -4.443 -10.707 -11.345 16.220 hybrid contribution 1.623 0.908 0.647 1.969 sum -2.820 -9.799 -10.698 14.779 Atomic orbital electron populations 1.70117 1.05631 1.25935 1.55139 1.25450 0.95881 0.99956 1.01229 0.85750 0.78018 0.81289 0.77815 1.21283 1.21420 1.20999 1.19210 0.90686 0.86131 1.42896 0.93520 1.43816 1.29539 1.03358 1.55745 1.20455 0.94722 0.88045 0.93809 1.21666 0.99983 0.99786 0.98031 1.20727 0.94243 0.91433 0.93198 1.47396 1.17490 1.44990 1.20525 1.19604 0.86239 0.78814 0.81001 1.90603 1.21583 1.62345 1.72007 1.19862 0.98828 0.89802 1.03462 1.19643 0.94223 0.95561 0.99728 1.21530 0.99754 0.93730 0.95353 1.22416 0.93258 1.02617 0.99229 1.23365 0.97675 0.89898 0.95728 1.67793 1.32023 1.11193 1.09647 1.22747 0.87806 1.00468 0.94921 1.23121 0.99552 0.95948 0.98261 1.23304 1.02431 0.94659 0.98342 1.21976 0.83349 0.99345 0.98383 1.21979 0.87364 0.95888 0.91254 0.94000 0.92782 0.94642 0.89551 0.95379 0.90758 0.88594 0.85856 0.81499 0.79515 0.82150 0.89425 0.85475 0.85825 0.89441 0.90363 0.90403 0.90786 0.96633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.58 10.95 21.65 0.24 -50.34 16 2 C -0.03 -1.53 5.00 84.86 0.42 -1.11 16 3 Si 0.94 44.27 29.57 68.60 2.03 46.29 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 7 C -0.26 -13.80 9.25 84.03 0.78 -13.02 16 8 H 0.05 2.58 7.85 -2.91 -0.02 2.56 16 9 N -0.60 -28.26 2.53 -697.93 -1.76 -30.03 16 10 C 0.16 6.14 5.64 87.19 0.49 6.63 16 11 C -0.15 -5.34 5.64 29.04 0.16 -5.18 16 12 C 0.12 3.91 5.67 84.23 0.48 4.39 16 13 N -0.58 -19.97 2.46 -831.21 -2.04 -22.01 16 14 C 0.56 20.69 5.83 87.66 0.51 21.20 16 15 O -0.58 -25.16 16.37 -3.04 -0.05 -25.21 16 16 C -0.12 -3.68 1.25 -53.68 -0.07 -3.75 16 17 C -0.09 -2.40 4.05 -19.77 -0.08 -2.48 16 18 C -0.08 -1.87 9.44 22.46 0.21 -1.66 16 19 C -0.16 -2.80 10.11 22.36 0.23 -2.58 16 20 C 0.09 1.69 11.18 84.69 0.95 2.64 16 21 N -0.50 -12.27 10.36 -195.83 -2.03 -14.30 16 22 C 0.10 2.48 10.51 84.67 0.89 3.37 16 23 C -0.13 -3.99 9.78 30.59 0.30 -3.69 16 24 C -0.15 -5.00 7.62 30.59 0.23 -4.76 16 25 C 0.09 3.22 4.87 87.56 0.43 3.65 16 26 C 0.16 6.96 4.94 86.57 0.43 7.39 16 27 H 0.25 13.46 8.32 -92.71 -0.77 12.68 16 28 H 0.05 1.88 7.58 -2.39 -0.02 1.86 16 29 H 0.04 1.44 8.02 -2.38 -0.02 1.42 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.03 1.19 7.91 -2.39 -0.02 1.18 16 32 H 0.07 2.39 7.16 -2.39 -0.02 2.37 16 33 H 0.10 2.37 8.05 -2.39 -0.02 2.35 16 34 H 0.12 3.16 7.49 -2.91 -0.02 3.14 16 35 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 37 H 0.16 3.90 5.95 -2.91 -0.02 3.88 16 38 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.12 3.53 6.11 -2.39 -0.01 3.51 16 41 H 0.09 3.73 6.38 -2.39 -0.02 3.72 16 42 H 0.08 2.50 5.51 -2.39 -0.01 2.49 16 43 H 0.08 2.34 7.73 -2.39 -0.02 2.32 16 44 H 0.07 3.45 3.27 -2.39 -0.01 3.44 16 45 H 0.02 0.75 7.96 -2.39 -0.02 0.73 16 Total: -1.00 -66.26 350.18 3.74 -62.52 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 1.00 Total: 22.04 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 6.36 Total: 11.03 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -5.60 Total: -116.68 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -66.26 3.74 -62.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981805345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.900 kcal (2) G-P(sol) polarization free energy of solvation -66.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds