Wall clock time and date at job start Tue Mar 31 2020 11:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48499 * 109.47308 * 270.00444 * 3 2 1 5 5 H 1.48501 * 109.46874 * 30.00014 * 3 2 1 6 6 H 1.48498 * 109.46970 * 150.00084 * 3 2 1 7 7 C 1.38811 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00089 * 205.63229 * 7 2 1 9 9 N 1.36945 * 119.99822 * 25.63349 * 7 2 1 10 10 C 1.43466 * 118.93909 * 217.56501 * 9 7 2 11 11 C 1.53240 * 108.26121 * 273.78027 * 10 9 7 12 12 C 1.47138 * 111.80943 * 281.67863 * 11 10 9 13 13 N 1.48212 * 110.34867 * 58.22862 * 12 11 10 14 14 C 1.34771 * 119.97013 * 102.45906 * 13 12 11 15 15 O 1.21284 * 119.99915 * 173.90335 * 14 13 12 16 16 C 1.50705 * 120.00343 * 353.90933 * 14 13 12 17 17 H 1.09000 * 110.71673 * 316.89853 * 16 14 13 18 18 C 1.54412 * 110.81060 * 193.31126 * 16 14 13 19 19 C 1.51057 * 105.14804 * 215.61637 * 18 16 14 20 20 C 1.38625 * 131.51573 * 196.98973 * 19 18 16 21 21 C 1.38209 * 119.09522 * 180.02562 * 20 19 18 22 22 N 1.31877 * 120.71261 * 0.02562 * 21 20 19 23 23 C 1.31836 * 121.78539 * 359.97438 * 22 21 20 24 24 C 1.38324 * 120.75904 * 0.02726 * 23 22 21 25 25 C 1.51191 * 131.27464 * 179.97438 * 24 23 22 26 26 C 1.43619 * 120.05836 * 282.48606 * 13 12 11 27 27 C 1.48855 * 118.93717 * 37.83065 * 9 7 2 28 28 H 0.97001 * 120.00307 * 186.45913 * 1 2 3 29 29 H 1.09002 * 109.76080 * 33.24396 * 10 9 7 30 30 H 1.08999 * 109.75962 * 154.01412 * 10 9 7 31 31 H 1.08995 * 109.07447 * 161.04386 * 11 10 9 32 32 H 1.08997 * 108.90562 * 42.20111 * 11 10 9 33 33 H 1.09004 * 109.32321 * 297.95732 * 12 11 10 34 34 H 1.09005 * 109.32450 * 178.49728 * 12 11 10 35 35 H 1.08996 * 110.31002 * 334.53286 * 18 16 14 36 36 H 1.08997 * 110.30570 * 96.69969 * 18 16 14 37 37 H 1.08003 * 120.45332 * 0.02562 * 20 19 18 38 38 H 1.08005 * 119.64371 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.62098 * 180.02562 * 23 22 21 40 40 H 1.09001 * 110.29192 * 44.03150 * 25 24 23 41 41 H 1.08992 * 110.38091 * 281.93688 * 25 24 23 42 42 H 1.09006 * 108.87259 * 329.88693 * 26 13 12 43 43 H 1.08994 * 108.79444 * 211.39269 * 26 13 12 44 44 H 1.09000 * 109.48352 * 260.60051 * 27 9 7 45 45 H 1.08998 * 109.48544 * 20.62481 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0106 -1.2483 0.4040 9 7 1.4267 -2.3295 -0.5141 10 6 1.6635 -3.5891 0.1306 11 6 2.9584 -4.1820 -0.4350 12 6 2.7479 -4.7939 -1.7564 13 7 2.2132 -3.7923 -2.7090 14 6 3.0286 -3.2300 -3.6229 15 8 2.5717 -2.4950 -4.4726 16 6 4.5082 -3.5145 -3.5892 17 1 4.8841 -3.4806 -2.5667 18 6 5.2774 -2.5275 -4.4939 19 6 6.4070 -3.3352 -5.0884 20 6 7.5830 -2.9494 -5.7129 21 6 8.4521 -3.9223 -6.1691 22 7 8.1715 -5.2017 -6.0157 23 6 7.0627 -5.6037 -5.4267 24 6 6.1454 -4.6874 -4.9448 25 6 4.8201 -4.8779 -4.2426 26 6 0.8271 -3.4199 -2.6586 27 6 0.5718 -2.2094 -1.7268 28 1 -0.4850 -0.8347 0.0945 29 1 1.7711 -3.4387 1.2048 30 1 0.8320 -4.2658 -0.0661 31 1 3.3326 -4.9408 0.2521 32 1 3.7002 -3.3885 -0.5253 33 1 2.0400 -5.6176 -1.6638 34 1 3.6967 -5.1778 -2.1314 35 1 4.6260 -2.1508 -5.2825 36 1 5.6731 -1.7019 -3.9025 37 1 7.8168 -1.9028 -5.8411 38 1 9.3706 -3.6317 -6.6574 39 1 6.8682 -6.6607 -5.3193 40 1 4.9041 -5.6522 -3.4801 41 1 4.0436 -5.1387 -4.9616 42 1 0.2465 -4.2698 -2.2996 43 1 0.4948 -3.1663 -3.6652 44 1 -0.4774 -2.1927 -1.4318 45 1 0.8159 -1.2871 -2.2538 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981962014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:37 Heat of formation + Delta-G solvation = 25.472673 kcal Electronic energy + Delta-G solvation = -27194.657189 eV Core-core repulsion = 23598.446276 eV Total energy + Delta-G solvation = -3596.210912 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11812 -39.79943 -37.41304 -36.22200 -34.58272 -32.49704 -32.11969 -31.19051 -30.09568 -28.03990 -27.54415 -25.42293 -24.60109 -23.36377 -22.43772 -21.87572 -20.99937 -19.81854 -18.59019 -17.40184 -17.04212 -16.90491 -16.26726 -15.94927 -15.50484 -14.97745 -14.52517 -14.30850 -14.10118 -13.79480 -13.75539 -13.58830 -13.45420 -13.08041 -12.86787 -12.65485 -12.48498 -12.18081 -12.03467 -11.68598 -11.53265 -11.37696 -11.17763 -11.04901 -10.68550 -10.52492 -10.36296 -10.24821 -10.04424 -9.73982 -9.54626 -9.42345 -9.32469 -9.04678 -8.31947 -8.19957 -6.82731 -6.03099 -3.37928 0.94074 1.11037 2.85962 3.34609 3.49047 3.52184 3.62190 3.66866 4.10712 4.20826 4.36477 4.58645 4.64637 4.74872 4.81166 4.93795 4.99136 5.15854 5.24637 5.28289 5.30598 5.43405 5.47948 5.54668 5.58789 5.64863 5.69047 5.72600 5.81752 5.91873 5.97901 6.02194 6.08386 6.20231 6.22553 6.25786 6.29060 6.52972 6.68477 6.69992 6.85581 7.03859 7.15453 7.73922 7.79571 8.13022 8.51715 8.59700 9.17297 9.81682 10.27239 11.16448 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.004030 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.666048 B = 6946.036183 C = 7768.709579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.010 4.010 3 Si 1.059 2.941 4 H -0.292 1.292 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.362 4.362 8 H 0.047 0.953 9 N -0.591 5.591 10 C 0.164 3.836 11 C -0.173 4.173 12 C 0.119 3.881 13 N -0.582 5.582 14 C 0.529 3.471 15 O -0.543 6.543 16 C -0.107 4.107 17 H 0.106 0.894 18 C -0.075 4.075 19 C -0.043 4.043 20 C -0.160 4.160 21 C 0.094 3.906 22 N -0.487 5.487 23 C 0.112 3.888 24 C -0.149 4.149 25 C -0.063 4.063 26 C 0.097 3.903 27 C 0.141 3.859 28 H 0.269 0.731 29 H 0.047 0.953 30 H 0.029 0.971 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.153 0.847 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.033 0.967 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.056 -12.107 -7.969 18.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.214 4.214 3 Si 0.889 3.111 4 H -0.219 1.219 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.491 4.491 8 H 0.064 0.936 9 N -0.313 5.313 10 C 0.036 3.964 11 C -0.214 4.214 12 C -0.003 4.003 13 N -0.313 5.313 14 C 0.316 3.684 15 O -0.420 6.420 16 C -0.129 4.129 17 H 0.124 0.876 18 C -0.112 4.112 19 C -0.051 4.051 20 C -0.180 4.180 21 C -0.062 4.062 22 N -0.196 5.196 23 C -0.045 4.045 24 C -0.151 4.151 25 C -0.101 4.101 26 C -0.028 4.028 27 C 0.016 3.984 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.152 0.848 38 H 0.174 0.826 39 H 0.170 0.830 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.051 0.949 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.183 -10.699 -8.794 17.800 hybrid contribution -0.279 -0.963 0.599 1.168 sum 10.904 -11.662 -8.194 17.946 Atomic orbital electron populations 1.70748 1.06850 1.30368 1.46237 1.25902 0.96408 1.01709 0.97401 0.83619 0.74712 0.76109 0.76639 1.21880 1.21546 1.21810 1.19769 0.97795 0.89131 1.42442 0.93577 1.43626 1.58005 1.03468 1.26244 1.20176 0.92628 0.87920 0.95707 1.21810 1.03238 1.00489 0.95896 1.20843 0.98978 0.90261 0.90187 1.47282 1.09851 1.41521 1.32619 1.20014 0.87787 0.79682 0.80877 1.90656 1.76749 1.37328 1.37317 1.21988 0.93421 0.95880 1.01571 0.87552 1.21023 0.93588 0.97142 0.99429 1.20953 0.94441 0.95255 0.94419 1.21665 0.94353 1.01522 1.00456 1.22682 0.98889 0.87990 0.96642 1.67712 1.18879 1.18668 1.14338 1.22189 0.88803 0.99667 0.93845 1.21501 0.97619 0.94887 1.01087 1.20929 0.93481 0.96620 0.99065 1.21761 0.81009 0.98888 1.01151 1.22037 0.94012 0.95757 0.86644 0.92057 0.93436 0.95227 0.92359 0.91376 0.91501 0.90904 0.87347 0.89485 0.84760 0.82593 0.82969 0.89544 0.89455 0.92176 0.90728 0.94937 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 12.99 55.49 0.72 -26.11 16 2 C -0.01 -0.27 4.70 -17.43 -0.08 -0.35 16 3 Si 1.06 25.50 29.99 -169.99 -5.10 20.40 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.36 -9.81 8.97 -15.06 -0.13 -9.95 16 8 H 0.05 1.28 7.95 -52.49 -0.42 0.87 16 9 N -0.59 -13.95 2.23 -172.34 -0.38 -14.33 16 10 C 0.16 3.17 5.59 -5.52 -0.03 3.14 16 11 C -0.17 -2.69 5.63 -29.42 -0.17 -2.86 16 12 C 0.12 1.58 5.30 -5.91 -0.03 1.55 16 13 N -0.58 -9.62 2.46 -176.65 -0.43 -10.06 16 14 C 0.53 9.12 6.83 -10.99 -0.08 9.04 16 15 O -0.54 -11.27 15.02 5.55 0.08 -11.18 16 16 C -0.11 -1.44 2.44 -90.31 -0.22 -1.66 16 17 H 0.11 1.41 7.39 -51.93 -0.38 1.03 16 18 C -0.07 -1.00 6.20 -26.97 -0.17 -1.17 16 19 C -0.04 -0.51 6.20 -104.22 -0.65 -1.16 16 20 C -0.16 -1.69 10.12 -39.45 -0.40 -2.09 16 21 C 0.09 0.97 11.19 -17.54 -0.20 0.78 16 22 N -0.49 -5.78 10.36 -13.23 -0.14 -5.91 16 23 C 0.11 1.21 11.19 -17.52 -0.20 1.02 16 24 C -0.15 -1.69 6.19 -104.26 -0.64 -2.34 16 25 C -0.06 -0.67 5.69 -26.93 -0.15 -0.83 16 26 C 0.10 1.75 5.31 -4.58 -0.02 1.73 16 27 C 0.14 3.22 5.30 -1.75 -0.01 3.21 16 28 H 0.27 7.99 6.92 -40.82 -0.28 7.71 16 29 H 0.05 0.98 8.02 -51.93 -0.42 0.56 16 30 H 0.03 0.53 7.58 -51.93 -0.39 0.13 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.24 7.76 -51.93 -0.40 0.83 16 33 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 34 H 0.07 0.78 4.62 -51.93 -0.24 0.54 16 35 H 0.11 1.63 6.86 -51.93 -0.36 1.27 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.15 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.09 0.74 6.84 -51.93 -0.36 0.38 16 41 H 0.09 0.96 7.88 -51.93 -0.41 0.55 16 42 H 0.06 0.95 7.73 -51.93 -0.40 0.55 16 43 H 0.07 1.38 7.28 -51.93 -0.38 1.00 16 44 H 0.03 0.77 7.30 -51.93 -0.38 0.39 16 45 H 0.06 1.66 7.58 -51.93 -0.39 1.27 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -32.87 351.42 -9.67 -42.54 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.54 Total: 1.29 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -3.18 Total: -1.93 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.23 Total: -56.40 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.10 Total: 20.40 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.87 -9.67 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981962014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.010 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds