Wall clock time and date at job start Tue Mar 31 2020 11:14:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86804 * 120.00077 * 2 1
4 4 H 1.48499 * 109.47308 * 270.00444 * 3 2 1
5 5 H 1.48501 * 109.46874 * 30.00014 * 3 2 1
6 6 H 1.48498 * 109.46970 * 150.00084 * 3 2 1
7 7 C 1.38811 * 120.00272 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00089 * 205.63229 * 7 2 1
9 9 N 1.36945 * 119.99822 * 25.63349 * 7 2 1
10 10 C 1.43466 * 118.93909 * 217.56501 * 9 7 2
11 11 C 1.53240 * 108.26121 * 273.78027 * 10 9 7
12 12 C 1.47138 * 111.80943 * 281.67863 * 11 10 9
13 13 N 1.48212 * 110.34867 * 58.22862 * 12 11 10
14 14 C 1.34771 * 119.97013 * 102.45906 * 13 12 11
15 15 O 1.21284 * 119.99915 * 173.90335 * 14 13 12
16 16 C 1.50705 * 120.00343 * 353.90933 * 14 13 12
17 17 H 1.09000 * 110.71673 * 316.89853 * 16 14 13
18 18 C 1.54412 * 110.81060 * 193.31126 * 16 14 13
19 19 C 1.51057 * 105.14804 * 215.61637 * 18 16 14
20 20 C 1.38625 * 131.51573 * 196.98973 * 19 18 16
21 21 C 1.38209 * 119.09522 * 180.02562 * 20 19 18
22 22 N 1.31877 * 120.71261 * 0.02562 * 21 20 19
23 23 C 1.31836 * 121.78539 * 359.97438 * 22 21 20
24 24 C 1.38324 * 120.75904 * 0.02726 * 23 22 21
25 25 C 1.51191 * 131.27464 * 179.97438 * 24 23 22
26 26 C 1.43619 * 120.05836 * 282.48606 * 13 12 11
27 27 C 1.48855 * 118.93717 * 37.83065 * 9 7 2
28 28 H 0.97001 * 120.00307 * 186.45913 * 1 2 3
29 29 H 1.09002 * 109.76080 * 33.24396 * 10 9 7
30 30 H 1.08999 * 109.75962 * 154.01412 * 10 9 7
31 31 H 1.08995 * 109.07447 * 161.04386 * 11 10 9
32 32 H 1.08997 * 108.90562 * 42.20111 * 11 10 9
33 33 H 1.09004 * 109.32321 * 297.95732 * 12 11 10
34 34 H 1.09005 * 109.32450 * 178.49728 * 12 11 10
35 35 H 1.08996 * 110.31002 * 334.53286 * 18 16 14
36 36 H 1.08997 * 110.30570 * 96.69969 * 18 16 14
37 37 H 1.08003 * 120.45332 * 0.02562 * 20 19 18
38 38 H 1.08005 * 119.64371 * 179.97438 * 21 20 19
39 39 H 1.08004 * 119.62098 * 180.02562 * 23 22 21
40 40 H 1.09001 * 110.29192 * 44.03150 * 25 24 23
41 41 H 1.08992 * 110.38091 * 281.93688 * 25 24 23
42 42 H 1.09006 * 108.87259 * 329.88693 * 26 13 12
43 43 H 1.08994 * 108.79444 * 211.39269 * 26 13 12
44 44 H 1.09000 * 109.48352 * 260.60051 * 27 9 7
45 45 H 1.08998 * 109.48544 * 20.62481 * 27 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4976 2.0465 -1.4000
5 1 1.4476 2.6527 0.7001
6 1 3.5477 1.4401 0.7000
7 6 2.0103 -1.2021 -0.0005
8 1 3.0106 -1.2483 0.4040
9 7 1.4267 -2.3295 -0.5141
10 6 1.6635 -3.5891 0.1306
11 6 2.9584 -4.1820 -0.4350
12 6 2.7479 -4.7939 -1.7564
13 7 2.2132 -3.7923 -2.7090
14 6 3.0286 -3.2300 -3.6229
15 8 2.5717 -2.4950 -4.4726
16 6 4.5082 -3.5145 -3.5892
17 1 4.8841 -3.4806 -2.5667
18 6 5.2774 -2.5275 -4.4939
19 6 6.4070 -3.3352 -5.0884
20 6 7.5830 -2.9494 -5.7129
21 6 8.4521 -3.9223 -6.1691
22 7 8.1715 -5.2017 -6.0157
23 6 7.0627 -5.6037 -5.4267
24 6 6.1454 -4.6874 -4.9448
25 6 4.8201 -4.8779 -4.2426
26 6 0.8271 -3.4199 -2.6586
27 6 0.5718 -2.2094 -1.7268
28 1 -0.4850 -0.8347 0.0945
29 1 1.7711 -3.4387 1.2048
30 1 0.8320 -4.2658 -0.0661
31 1 3.3326 -4.9408 0.2521
32 1 3.7002 -3.3885 -0.5253
33 1 2.0400 -5.6176 -1.6638
34 1 3.6967 -5.1778 -2.1314
35 1 4.6260 -2.1508 -5.2825
36 1 5.6731 -1.7019 -3.9025
37 1 7.8168 -1.9028 -5.8411
38 1 9.3706 -3.6317 -6.6574
39 1 6.8682 -6.6607 -5.3193
40 1 4.9041 -5.6522 -3.4801
41 1 4.0436 -5.1387 -4.9616
42 1 0.2465 -4.2698 -2.2996
43 1 0.4948 -3.1663 -3.6652
44 1 -0.4774 -2.1927 -1.4318
45 1 0.8159 -1.2871 -2.2538
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000981962014.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:14:37
Heat of formation + Delta-G solvation = 25.472673 kcal
Electronic energy + Delta-G solvation = -27194.657189 eV
Core-core repulsion = 23598.446276 eV
Total energy + Delta-G solvation = -3596.210912 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.11812 -39.79943 -37.41304 -36.22200 -34.58272 -32.49704 -32.11969 -31.19051
-30.09568 -28.03990 -27.54415 -25.42293 -24.60109 -23.36377 -22.43772 -21.87572
-20.99937 -19.81854 -18.59019 -17.40184 -17.04212 -16.90491 -16.26726 -15.94927
-15.50484 -14.97745 -14.52517 -14.30850 -14.10118 -13.79480 -13.75539 -13.58830
-13.45420 -13.08041 -12.86787 -12.65485 -12.48498 -12.18081 -12.03467 -11.68598
-11.53265 -11.37696 -11.17763 -11.04901 -10.68550 -10.52492 -10.36296 -10.24821
-10.04424 -9.73982 -9.54626 -9.42345 -9.32469 -9.04678 -8.31947 -8.19957
-6.82731 -6.03099 -3.37928 0.94074 1.11037 2.85962 3.34609 3.49047
3.52184 3.62190 3.66866 4.10712 4.20826 4.36477 4.58645 4.64637
4.74872 4.81166 4.93795 4.99136 5.15854 5.24637 5.28289 5.30598
5.43405 5.47948 5.54668 5.58789 5.64863 5.69047 5.72600 5.81752
5.91873 5.97901 6.02194 6.08386 6.20231 6.22553 6.25786 6.29060
6.52972 6.68477 6.69992 6.85581 7.03859 7.15453 7.73922 7.79571
8.13022 8.51715 8.59700 9.17297 9.81682 10.27239 11.16448
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.016686 B = 0.004030 C = 0.003603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1677.666048 B = 6946.036183 C = 7768.709579
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C -0.010 4.010
3 Si 1.059 2.941
4 H -0.292 1.292
5 H -0.289 1.289
6 H -0.292 1.292
7 C -0.362 4.362
8 H 0.047 0.953
9 N -0.591 5.591
10 C 0.164 3.836
11 C -0.173 4.173
12 C 0.119 3.881
13 N -0.582 5.582
14 C 0.529 3.471
15 O -0.543 6.543
16 C -0.107 4.107
17 H 0.106 0.894
18 C -0.075 4.075
19 C -0.043 4.043
20 C -0.160 4.160
21 C 0.094 3.906
22 N -0.487 5.487
23 C 0.112 3.888
24 C -0.149 4.149
25 C -0.063 4.063
26 C 0.097 3.903
27 C 0.141 3.859
28 H 0.269 0.731
29 H 0.047 0.953
30 H 0.029 0.971
31 H 0.058 0.942
32 H 0.068 0.932
33 H 0.067 0.933
34 H 0.073 0.927
35 H 0.109 0.891
36 H 0.087 0.913
37 H 0.134 0.866
38 H 0.157 0.843
39 H 0.153 0.847
40 H 0.086 0.914
41 H 0.087 0.913
42 H 0.060 0.940
43 H 0.074 0.926
44 H 0.033 0.967
45 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.056 -12.107 -7.969 18.230
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.542 5.542
2 C -0.214 4.214
3 Si 0.889 3.111
4 H -0.219 1.219
5 H -0.215 1.215
6 H -0.218 1.218
7 C -0.491 4.491
8 H 0.064 0.936
9 N -0.313 5.313
10 C 0.036 3.964
11 C -0.214 4.214
12 C -0.003 4.003
13 N -0.313 5.313
14 C 0.316 3.684
15 O -0.420 6.420
16 C -0.129 4.129
17 H 0.124 0.876
18 C -0.112 4.112
19 C -0.051 4.051
20 C -0.180 4.180
21 C -0.062 4.062
22 N -0.196 5.196
23 C -0.045 4.045
24 C -0.151 4.151
25 C -0.101 4.101
26 C -0.028 4.028
27 C 0.016 3.984
28 H 0.079 0.921
29 H 0.066 0.934
30 H 0.048 0.952
31 H 0.076 0.924
32 H 0.086 0.914
33 H 0.085 0.915
34 H 0.091 0.909
35 H 0.127 0.873
36 H 0.105 0.895
37 H 0.152 0.848
38 H 0.174 0.826
39 H 0.170 0.830
40 H 0.105 0.895
41 H 0.105 0.895
42 H 0.078 0.922
43 H 0.093 0.907
44 H 0.051 0.949
45 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 11.183 -10.699 -8.794 17.800
hybrid contribution -0.279 -0.963 0.599 1.168
sum 10.904 -11.662 -8.194 17.946
Atomic orbital electron populations
1.70748 1.06850 1.30368 1.46237 1.25902 0.96408 1.01709 0.97401
0.83619 0.74712 0.76109 0.76639 1.21880 1.21546 1.21810 1.19769
0.97795 0.89131 1.42442 0.93577 1.43626 1.58005 1.03468 1.26244
1.20176 0.92628 0.87920 0.95707 1.21810 1.03238 1.00489 0.95896
1.20843 0.98978 0.90261 0.90187 1.47282 1.09851 1.41521 1.32619
1.20014 0.87787 0.79682 0.80877 1.90656 1.76749 1.37328 1.37317
1.21988 0.93421 0.95880 1.01571 0.87552 1.21023 0.93588 0.97142
0.99429 1.20953 0.94441 0.95255 0.94419 1.21665 0.94353 1.01522
1.00456 1.22682 0.98889 0.87990 0.96642 1.67712 1.18879 1.18668
1.14338 1.22189 0.88803 0.99667 0.93845 1.21501 0.97619 0.94887
1.01087 1.20929 0.93481 0.96620 0.99065 1.21761 0.81009 0.98888
1.01151 1.22037 0.94012 0.95757 0.86644 0.92057 0.93436 0.95227
0.92359 0.91376 0.91501 0.90904 0.87347 0.89485 0.84760 0.82593
0.82969 0.89544 0.89455 0.92176 0.90728 0.94937 0.91925
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.83 12.99 55.49 0.72 -26.11 16
2 C -0.01 -0.27 4.70 -17.43 -0.08 -0.35 16
3 Si 1.06 25.50 29.99 -169.99 -5.10 20.40 16
4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
7 C -0.36 -9.81 8.97 -15.06 -0.13 -9.95 16
8 H 0.05 1.28 7.95 -52.49 -0.42 0.87 16
9 N -0.59 -13.95 2.23 -172.34 -0.38 -14.33 16
10 C 0.16 3.17 5.59 -5.52 -0.03 3.14 16
11 C -0.17 -2.69 5.63 -29.42 -0.17 -2.86 16
12 C 0.12 1.58 5.30 -5.91 -0.03 1.55 16
13 N -0.58 -9.62 2.46 -176.65 -0.43 -10.06 16
14 C 0.53 9.12 6.83 -10.99 -0.08 9.04 16
15 O -0.54 -11.27 15.02 5.55 0.08 -11.18 16
16 C -0.11 -1.44 2.44 -90.31 -0.22 -1.66 16
17 H 0.11 1.41 7.39 -51.93 -0.38 1.03 16
18 C -0.07 -1.00 6.20 -26.97 -0.17 -1.17 16
19 C -0.04 -0.51 6.20 -104.22 -0.65 -1.16 16
20 C -0.16 -1.69 10.12 -39.45 -0.40 -2.09 16
21 C 0.09 0.97 11.19 -17.54 -0.20 0.78 16
22 N -0.49 -5.78 10.36 -13.23 -0.14 -5.91 16
23 C 0.11 1.21 11.19 -17.52 -0.20 1.02 16
24 C -0.15 -1.69 6.19 -104.26 -0.64 -2.34 16
25 C -0.06 -0.67 5.69 -26.93 -0.15 -0.83 16
26 C 0.10 1.75 5.31 -4.58 -0.02 1.73 16
27 C 0.14 3.22 5.30 -1.75 -0.01 3.21 16
28 H 0.27 7.99 6.92 -40.82 -0.28 7.71 16
29 H 0.05 0.98 8.02 -51.93 -0.42 0.56 16
30 H 0.03 0.53 7.58 -51.93 -0.39 0.13 16
31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
32 H 0.07 1.24 7.76 -51.93 -0.40 0.83 16
33 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16
34 H 0.07 0.78 4.62 -51.93 -0.24 0.54 16
35 H 0.11 1.63 6.86 -51.93 -0.36 1.27 16
36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16
37 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16
38 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16
39 H 0.15 1.26 8.06 -52.48 -0.42 0.83 16
40 H 0.09 0.74 6.84 -51.93 -0.36 0.38 16
41 H 0.09 0.96 7.88 -51.93 -0.41 0.55 16
42 H 0.06 0.95 7.73 -51.93 -0.40 0.55 16
43 H 0.07 1.38 7.28 -51.93 -0.38 1.00 16
44 H 0.03 0.77 7.30 -51.93 -0.38 0.39 16
45 H 0.06 1.66 7.58 -51.93 -0.39 1.27 16
LS Contribution 351.42 15.07 5.30 5.30
Total: -1.00 -32.87 351.42 -9.67 -42.54
By element:
Atomic # 1 Polarization: 7.83 SS G_CDS: -6.54 Total: 1.29 kcal
Atomic # 6 Polarization: 1.24 SS G_CDS: -3.18 Total: -1.93 kcal
Atomic # 7 Polarization: -56.17 SS G_CDS: -0.23 Total: -56.40 kcal
Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.18 kcal
Atomic # 14 Polarization: 25.50 SS G_CDS: -5.10 Total: 20.40 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -32.87 -9.67 -42.54 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981962014.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.010 kcal
(2) G-P(sol) polarization free energy of solvation -32.871 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.139 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.473 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds