Wall clock time and date at job start Tue Mar 31 2020 11:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48499 * 109.47308 * 270.00444 * 3 2 1 5 5 H 1.48501 * 109.46874 * 30.00014 * 3 2 1 6 6 H 1.48498 * 109.46970 * 150.00084 * 3 2 1 7 7 C 1.38811 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00089 * 205.63229 * 7 2 1 9 9 N 1.36945 * 119.99822 * 25.63349 * 7 2 1 10 10 C 1.43466 * 118.93909 * 217.56501 * 9 7 2 11 11 C 1.53240 * 108.26121 * 273.78027 * 10 9 7 12 12 C 1.47138 * 111.80943 * 281.67863 * 11 10 9 13 13 N 1.48212 * 110.34867 * 58.22862 * 12 11 10 14 14 C 1.34771 * 119.97013 * 102.45906 * 13 12 11 15 15 O 1.21284 * 119.99915 * 173.90335 * 14 13 12 16 16 C 1.50705 * 120.00343 * 353.90933 * 14 13 12 17 17 H 1.09000 * 110.71673 * 316.89853 * 16 14 13 18 18 C 1.54412 * 110.81060 * 193.31126 * 16 14 13 19 19 C 1.51057 * 105.14804 * 215.61637 * 18 16 14 20 20 C 1.38625 * 131.51573 * 196.98973 * 19 18 16 21 21 C 1.38209 * 119.09522 * 180.02562 * 20 19 18 22 22 N 1.31877 * 120.71261 * 0.02562 * 21 20 19 23 23 C 1.31836 * 121.78539 * 359.97438 * 22 21 20 24 24 C 1.38324 * 120.75904 * 0.02726 * 23 22 21 25 25 C 1.51191 * 131.27464 * 179.97438 * 24 23 22 26 26 C 1.43619 * 120.05836 * 282.48606 * 13 12 11 27 27 C 1.48855 * 118.93717 * 37.83065 * 9 7 2 28 28 H 0.97001 * 120.00307 * 186.45913 * 1 2 3 29 29 H 1.09002 * 109.76080 * 33.24396 * 10 9 7 30 30 H 1.08999 * 109.75962 * 154.01412 * 10 9 7 31 31 H 1.08995 * 109.07447 * 161.04386 * 11 10 9 32 32 H 1.08997 * 108.90562 * 42.20111 * 11 10 9 33 33 H 1.09004 * 109.32321 * 297.95732 * 12 11 10 34 34 H 1.09005 * 109.32450 * 178.49728 * 12 11 10 35 35 H 1.08996 * 110.31002 * 334.53286 * 18 16 14 36 36 H 1.08997 * 110.30570 * 96.69969 * 18 16 14 37 37 H 1.08003 * 120.45332 * 0.02562 * 20 19 18 38 38 H 1.08005 * 119.64371 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.62098 * 180.02562 * 23 22 21 40 40 H 1.09001 * 110.29192 * 44.03150 * 25 24 23 41 41 H 1.08992 * 110.38091 * 281.93688 * 25 24 23 42 42 H 1.09006 * 108.87259 * 329.88693 * 26 13 12 43 43 H 1.08994 * 108.79444 * 211.39269 * 26 13 12 44 44 H 1.09000 * 109.48352 * 260.60051 * 27 9 7 45 45 H 1.08998 * 109.48544 * 20.62481 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0106 -1.2483 0.4040 9 7 1.4267 -2.3295 -0.5141 10 6 1.6635 -3.5891 0.1306 11 6 2.9584 -4.1820 -0.4350 12 6 2.7479 -4.7939 -1.7564 13 7 2.2132 -3.7923 -2.7090 14 6 3.0286 -3.2300 -3.6229 15 8 2.5717 -2.4950 -4.4726 16 6 4.5082 -3.5145 -3.5892 17 1 4.8841 -3.4806 -2.5667 18 6 5.2774 -2.5275 -4.4939 19 6 6.4070 -3.3352 -5.0884 20 6 7.5830 -2.9494 -5.7129 21 6 8.4521 -3.9223 -6.1691 22 7 8.1715 -5.2017 -6.0157 23 6 7.0627 -5.6037 -5.4267 24 6 6.1454 -4.6874 -4.9448 25 6 4.8201 -4.8779 -4.2426 26 6 0.8271 -3.4199 -2.6586 27 6 0.5718 -2.2094 -1.7268 28 1 -0.4850 -0.8347 0.0945 29 1 1.7711 -3.4387 1.2048 30 1 0.8320 -4.2658 -0.0661 31 1 3.3326 -4.9408 0.2521 32 1 3.7002 -3.3885 -0.5253 33 1 2.0400 -5.6176 -1.6638 34 1 3.6967 -5.1778 -2.1314 35 1 4.6260 -2.1508 -5.2825 36 1 5.6731 -1.7019 -3.9025 37 1 7.8168 -1.9028 -5.8411 38 1 9.3706 -3.6317 -6.6574 39 1 6.8682 -6.6607 -5.3193 40 1 4.9041 -5.6522 -3.4801 41 1 4.0436 -5.1387 -4.9616 42 1 0.2465 -4.2698 -2.2996 43 1 0.4948 -3.1663 -3.6652 44 1 -0.4774 -2.1927 -1.4318 45 1 0.8159 -1.2871 -2.2538 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981962014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:37 Heat of formation + Delta-G solvation = 5.975192 kcal Electronic energy + Delta-G solvation = -27195.502663 eV Core-core repulsion = 23598.446276 eV Total energy + Delta-G solvation = -3597.056387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.11411 -40.97886 -38.87837 -37.29055 -36.26991 -34.00851 -33.15733 -32.76634 -31.19353 -29.34388 -28.72529 -27.00005 -25.99329 -24.91960 -23.57942 -22.71568 -22.10211 -21.53884 -19.87306 -19.22509 -18.38744 -17.84913 -17.32871 -17.04525 -16.76976 -16.14689 -15.97943 -15.76559 -15.63878 -15.27692 -14.98678 -14.76663 -14.56248 -14.23071 -14.13062 -14.04354 -13.80154 -13.61680 -13.29440 -13.06690 -12.75201 -12.64907 -12.41227 -12.33720 -12.23954 -12.04996 -12.02735 -11.92668 -11.78520 -11.28388 -10.87242 -10.50301 -10.43218 -10.36720 -9.85179 -9.61717 -8.86330 -8.14891 -5.52710 0.15384 0.25457 1.50509 1.54100 1.57510 1.73815 2.09789 2.60460 2.81279 3.16076 3.16606 3.24934 3.56653 3.59196 3.66362 3.84126 3.94020 3.95527 4.08730 4.14337 4.19012 4.28772 4.39080 4.45484 4.50204 4.52157 4.62209 4.67106 4.69795 4.74543 4.85069 4.86964 4.89977 4.99767 5.00482 5.03595 5.06620 5.11530 5.21335 5.38843 5.49130 5.73243 5.75323 5.94015 6.40345 6.45168 7.00404 7.16485 7.19683 7.77925 8.24391 8.96336 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.004030 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.666048 B = 6946.036183 C = 7768.709579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.063 4.063 3 Si 1.101 2.899 4 H -0.294 1.294 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.356 4.356 8 H 0.038 0.962 9 N -0.604 5.604 10 C 0.154 3.846 11 C -0.158 4.158 12 C 0.115 3.885 13 N -0.585 5.585 14 C 0.521 3.479 15 O -0.589 6.589 16 C -0.101 4.101 17 H 0.113 0.887 18 C -0.074 4.074 19 C -0.061 4.061 20 C -0.164 4.164 21 C 0.092 3.908 22 N -0.506 5.506 23 C 0.109 3.891 24 C -0.152 4.152 25 C -0.052 4.052 26 C 0.110 3.890 27 C 0.152 3.848 28 H 0.255 0.745 29 H 0.030 0.970 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.039 0.961 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.150 0.850 38 H 0.184 0.816 39 H 0.179 0.821 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.016 0.984 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.251 -15.025 -7.998 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.262 4.262 3 Si 0.927 3.073 4 H -0.222 1.222 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.487 4.487 8 H 0.056 0.944 9 N -0.327 5.327 10 C 0.028 3.972 11 C -0.199 4.199 12 C -0.006 4.006 13 N -0.314 5.314 14 C 0.310 3.690 15 O -0.470 6.470 16 C -0.123 4.123 17 H 0.131 0.869 18 C -0.112 4.112 19 C -0.069 4.069 20 C -0.184 4.184 21 C -0.064 4.064 22 N -0.215 5.215 23 C -0.047 4.047 24 C -0.154 4.154 25 C -0.090 4.090 26 C -0.016 4.016 27 C 0.026 3.974 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.058 0.942 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.168 0.832 38 H 0.201 0.799 39 H 0.196 0.804 40 H 0.138 0.862 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.084 0.916 44 H 0.034 0.966 45 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 13.414 -13.678 -8.795 21.080 hybrid contribution -0.941 -0.085 0.621 1.130 sum 12.473 -13.762 -8.174 20.293 Atomic orbital electron populations 1.70860 1.07704 1.29529 1.49388 1.27039 0.96559 1.04832 0.97752 0.83051 0.74654 0.73080 0.76551 1.22151 1.21664 1.19422 1.19941 0.97262 0.90506 1.40948 0.94414 1.43793 1.57874 1.04178 1.26903 1.20416 0.95505 0.86550 0.94729 1.21592 0.99757 1.00541 0.97996 1.21162 1.01594 0.89768 0.88026 1.47476 1.09108 1.41823 1.33014 1.20741 0.89351 0.78715 0.80209 1.90636 1.77838 1.39242 1.39250 1.21945 0.90362 0.97835 1.02130 0.86897 1.20915 0.93940 0.97463 0.98844 1.20950 0.94738 0.95592 0.95615 1.21910 0.93890 1.02668 0.99912 1.23142 0.99644 0.87509 0.96107 1.67777 1.19466 1.19379 1.14875 1.22592 0.88192 1.00854 0.93062 1.21574 0.97947 0.94568 1.01336 1.20890 0.93024 0.95388 0.99662 1.21468 0.82927 0.97806 0.99370 1.21785 0.92853 0.95866 0.86945 0.93486 0.95155 0.93124 0.88444 0.94222 0.88281 0.87412 0.89770 0.90030 0.83195 0.79924 0.80359 0.86233 0.89602 0.88768 0.91561 0.96622 0.97100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.69 12.99 21.65 0.28 -57.40 16 2 C -0.06 -3.65 4.70 84.86 0.40 -3.25 16 3 Si 1.10 52.81 29.99 68.60 2.06 54.87 16 4 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.36 -19.73 8.97 84.03 0.75 -18.98 16 8 H 0.04 2.13 7.95 -2.91 -0.02 2.11 16 9 N -0.60 -28.83 2.23 -699.17 -1.56 -30.39 16 10 C 0.15 5.73 5.59 87.02 0.49 6.22 16 11 C -0.16 -4.39 5.63 28.85 0.16 -4.22 16 12 C 0.11 2.54 5.30 84.23 0.45 2.98 16 13 N -0.58 -18.27 2.46 -831.20 -2.04 -20.32 16 14 C 0.52 17.67 6.83 87.66 0.60 18.27 16 15 O -0.59 -25.24 15.02 -3.04 -0.05 -25.29 16 16 C -0.10 -2.58 2.44 -10.59 -0.03 -2.60 16 17 H 0.11 2.74 7.39 -2.39 -0.02 2.72 16 18 C -0.07 -1.99 6.20 30.44 0.19 -1.80 16 19 C -0.06 -1.39 6.20 -19.60 -0.12 -1.51 16 20 C -0.16 -3.20 10.12 22.36 0.23 -2.97 16 21 C 0.09 1.68 11.19 84.68 0.95 2.63 16 22 N -0.51 -10.66 10.36 -195.76 -2.03 -12.69 16 23 C 0.11 2.04 11.19 84.71 0.95 2.99 16 24 C -0.15 -3.07 6.19 -19.63 -0.12 -3.19 16 25 C -0.05 -0.95 5.69 30.47 0.17 -0.77 16 26 C 0.11 3.91 5.31 87.55 0.46 4.37 16 27 C 0.15 7.14 5.30 86.57 0.46 7.60 16 28 H 0.26 15.91 6.92 -92.71 -0.64 15.27 16 29 H 0.03 1.21 8.02 -2.39 -0.02 1.20 16 30 H 0.05 1.67 7.58 -2.39 -0.02 1.65 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.34 7.76 -2.39 -0.02 1.32 16 33 H 0.10 1.68 8.06 -2.39 -0.02 1.66 16 34 H 0.11 1.69 4.62 -2.38 -0.01 1.68 16 35 H 0.08 2.66 6.86 -2.39 -0.02 2.64 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.12 1.38 6.84 -2.39 -0.02 1.37 16 41 H 0.09 1.65 7.88 -2.39 -0.02 1.63 16 42 H 0.09 2.72 7.73 -2.38 -0.02 2.70 16 43 H 0.07 2.48 7.28 -2.39 -0.02 2.46 16 44 H 0.02 0.79 7.30 -2.39 -0.02 0.77 16 45 H 0.01 0.59 7.58 -2.39 -0.02 0.57 16 Total: -1.00 -76.37 351.42 3.77 -72.60 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.12 Total: 12.85 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 5.98 Total: 5.78 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -5.34 Total: -120.80 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 52.81 SS G_CDS: 2.06 Total: 54.87 kcal Total: -76.37 3.77 -72.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981962014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.573 kcal (2) G-P(sol) polarization free energy of solvation -76.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds