Wall clock time and date at job start Tue Mar 31 2020 11:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53758 * 112.06704 * 2 1 4 4 N 1.47200 * 106.40454 * 217.89814 * 3 2 1 5 5 C 1.36941 * 126.70413 * 211.29345 * 4 3 2 6 6 H 1.07998 * 119.99951 * 165.83048 * 5 4 3 7 7 C 1.38810 * 119.99655 * 345.82493 * 5 4 3 8 8 N 1.31618 * 120.00179 * 350.76934 * 7 5 4 9 9 Si 1.86806 * 119.99763 * 170.76524 * 7 5 4 10 10 H 1.48498 * 109.47001 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47042 * 120.00177 * 9 7 5 12 12 H 1.48507 * 109.47083 * 240.00292 * 9 7 5 13 13 C 1.47209 * 106.59375 * 31.55589 * 4 3 2 14 14 C 1.54038 * 106.26480 * 328.37286 * 13 4 3 15 15 C 1.52997 * 112.76973 * 141.67509 * 14 13 4 16 16 C 1.54314 * 109.25303 * 267.01103 * 14 13 4 17 17 N 1.48114 * 104.71036 * 88.38209 * 16 14 13 18 18 C 1.34775 * 127.84591 * 219.78028 * 17 16 14 19 19 O 1.21548 * 120.00501 * 183.18832 * 18 17 16 20 20 C 1.47846 * 119.99948 * 3.18950 * 18 17 16 21 21 C 1.40025 * 120.55529 * 330.76273 * 20 18 17 22 22 C 1.38363 * 118.28763 * 180.02562 * 21 20 18 23 23 C 1.38357 * 119.29927 * 359.97438 * 22 21 20 24 24 N 1.31930 * 121.07943 * 0.02562 * 23 22 21 25 25 C 1.31696 * 121.87902 * 359.65909 * 24 23 22 26 26 C 1.48112 * 104.31225 * 39.78412 * 17 16 14 27 27 H 1.08997 * 109.46720 * 58.98960 * 1 2 3 28 28 H 1.09005 * 109.46883 * 178.98316 * 1 2 3 29 29 H 1.09000 * 109.47082 * 298.99103 * 1 2 3 30 30 H 1.09006 * 110.07124 * 98.66075 * 3 2 1 31 31 H 1.09003 * 110.06584 * 337.13538 * 3 2 1 32 32 H 0.97006 * 119.99874 * 179.97438 * 8 7 5 33 33 H 1.08998 * 110.06594 * 87.68980 * 13 4 3 34 34 H 1.09001 * 110.06416 * 209.21327 * 13 4 3 35 35 H 1.09000 * 109.46918 * 301.38138 * 15 14 13 36 36 H 1.09001 * 109.47178 * 61.38364 * 15 14 13 37 37 H 1.09004 * 109.47100 * 181.38003 * 15 14 13 38 38 H 1.08999 * 110.39033 * 329.57718 * 16 14 13 39 39 H 1.09001 * 110.48973 * 207.23869 * 16 14 13 40 40 H 1.08002 * 120.86001 * 359.97438 * 21 20 18 41 41 H 1.07993 * 120.34689 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.45506 * 180.02562 * 23 22 21 43 43 H 1.07999 * 119.71285 * 180.31251 * 25 24 23 44 44 H 1.08997 * 110.38595 * 201.41385 * 26 17 16 45 45 H 1.08999 * 110.39071 * 79.02917 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1077 1.4249 0.0000 4 7 3.2965 1.3916 -0.8674 5 6 4.4265 2.1540 -0.7369 6 1 5.3208 1.8918 -1.2826 7 6 4.4224 3.2640 0.0967 8 7 3.2920 3.6909 0.6185 9 14 6.0212 4.1516 0.4779 10 1 7.1414 3.4786 -0.2274 11 1 5.9255 5.5616 0.0218 12 1 6.2677 4.1206 1.9421 13 6 3.0308 0.3830 -1.9063 14 6 2.1378 -0.6871 -1.2503 15 6 1.0610 -1.2211 -2.1969 16 6 3.0265 -1.8159 -0.6871 17 7 3.3640 -1.3786 0.6873 18 6 4.5441 -1.4988 1.3269 19 8 4.6481 -1.1395 2.4834 20 6 5.7125 -2.0676 0.6218 21 6 5.5381 -3.0060 -0.4028 22 6 6.6642 -3.5082 -1.0306 23 6 7.9143 -3.0710 -0.6303 24 7 8.0482 -2.1855 0.3385 25 6 7.0070 -1.6740 0.9620 26 6 2.1099 -0.7794 1.1991 27 1 -0.3633 0.5294 -0.8808 28 1 -0.3633 -1.0276 -0.0182 29 1 -0.3633 0.4981 0.8989 30 1 2.3911 1.7137 1.0122 31 1 1.3739 2.1260 -0.3978 32 1 3.2892 4.4664 1.2013 33 1 2.5124 0.8413 -2.7485 34 1 3.9666 -0.0645 -2.2410 35 1 0.4332 -0.3967 -2.5351 36 1 1.5352 -1.6933 -3.0573 37 1 0.4473 -1.9538 -1.6728 38 1 3.9317 -1.9208 -1.2851 39 1 2.4775 -2.7572 -0.6620 40 1 4.5502 -3.3301 -0.6949 41 1 6.5682 -4.2338 -1.8247 42 1 8.7949 -3.4610 -1.1189 43 1 7.1569 -0.9475 1.7469 44 1 2.3228 -0.1014 2.0256 45 1 1.4177 -1.5596 1.5155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982188092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:21 Heat of formation + Delta-G solvation = 46.946695 kcal Electronic energy + Delta-G solvation = -28180.375567 eV Core-core repulsion = 24585.095838 eV Total energy + Delta-G solvation = -3595.279729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79568 -39.79140 -37.98195 -34.81195 -33.29891 -32.49444 -31.70382 -31.20121 -30.71997 -26.97497 -26.05358 -25.92729 -25.00489 -23.97497 -23.33578 -22.17711 -20.04713 -19.77161 -17.97079 -17.23350 -16.88838 -16.58754 -16.14284 -15.72756 -15.17583 -14.65858 -14.24984 -14.19585 -13.98071 -13.52044 -13.45762 -13.40223 -13.18669 -13.03385 -12.81542 -12.32625 -12.16034 -11.96138 -11.70959 -11.56640 -11.43812 -11.39621 -10.82817 -10.80951 -10.69567 -10.13769 -10.01712 -9.93969 -9.86168 -9.82289 -9.69455 -9.55802 -9.33163 -9.11974 -8.65508 -8.27444 -6.78452 -5.75627 -3.08190 0.80788 1.20376 3.01598 3.27687 3.41720 3.49018 3.50064 3.93087 4.37798 4.50540 4.63817 4.68467 4.74902 4.84507 4.98313 5.03528 5.13127 5.40096 5.40631 5.41949 5.53225 5.56939 5.58899 5.68342 5.69404 5.83440 5.90004 5.94861 6.02638 6.04736 6.07536 6.10393 6.23831 6.27455 6.40564 6.42528 6.52255 6.62600 6.63530 6.80078 6.89605 7.39154 7.57704 7.76754 7.84970 7.95105 8.27086 8.46971 9.18320 9.80793 10.51987 11.38296 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.007460 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.636164 B = 3752.306537 C = 5436.504726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.098 4.098 3 C 0.181 3.819 4 N -0.588 5.588 5 C -0.225 4.225 6 H 0.071 0.929 7 C -0.001 4.001 8 N -0.913 5.913 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.288 1.288 13 C 0.147 3.853 14 C -0.087 4.087 15 C -0.124 4.124 16 C 0.105 3.895 17 N -0.597 5.597 18 C 0.590 3.410 19 O -0.536 6.536 20 C -0.164 4.164 21 C -0.056 4.056 22 C -0.182 4.182 23 C 0.112 3.888 24 N -0.487 5.487 25 C 0.160 3.840 26 C 0.126 3.874 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.022 0.978 32 H 0.252 0.748 33 H 0.018 0.982 34 H 0.037 0.963 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.157 0.843 43 H 0.166 0.834 44 H 0.084 0.916 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 -16.147 -5.336 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 C 0.055 3.945 4 N -0.311 5.311 5 C -0.353 4.353 6 H 0.089 0.911 7 C -0.198 4.198 8 N -0.560 5.560 9 Si 0.735 3.265 10 H -0.204 1.204 11 H -0.218 1.218 12 H -0.215 1.215 13 C 0.020 3.980 14 C -0.089 4.089 15 C -0.182 4.182 16 C -0.018 4.018 17 N -0.328 5.328 18 C 0.378 3.622 19 O -0.414 6.414 20 C -0.169 4.169 21 C -0.082 4.082 22 C -0.202 4.202 23 C -0.045 4.045 24 N -0.196 5.196 25 C 0.002 3.998 26 C 0.004 3.996 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.163 0.837 41 H 0.156 0.844 42 H 0.174 0.826 43 H 0.183 0.817 44 H 0.103 0.897 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.412 -15.480 -4.283 16.124 hybrid contribution -0.052 0.345 -0.213 0.409 sum -1.464 -15.135 -4.495 15.856 Atomic orbital electron populations 1.21587 0.93498 1.00739 1.02077 1.22584 0.94814 0.99744 0.92905 1.21209 0.87843 0.87985 0.97447 1.44293 1.16459 1.42952 1.27403 1.18906 0.88139 1.03954 1.24329 0.91106 1.24798 0.96900 0.97086 1.01019 1.69921 1.23737 1.26218 1.36105 0.86165 0.82936 0.79299 0.78136 1.20417 1.21752 1.21476 1.21364 0.95176 0.89664 0.91820 1.22387 0.95402 0.95321 0.95799 1.21626 0.97603 1.00774 0.98161 1.22815 0.98999 0.96605 0.83416 1.48430 1.10325 1.58774 1.15277 1.17443 0.80911 0.78262 0.85584 1.90779 1.83347 1.50462 1.16782 1.20962 0.95767 1.00807 0.99383 1.22124 1.00113 0.93715 0.92226 1.22067 0.93407 1.02526 1.02215 1.22958 0.97135 0.92018 0.92410 1.67794 1.33886 1.09833 1.08045 1.22974 0.86245 0.94873 0.95665 1.22392 0.83607 0.96176 0.97471 0.92122 0.93116 0.92509 0.90580 0.95964 0.93734 0.96393 0.94511 0.91863 0.92897 0.92599 0.89958 0.91506 0.83701 0.84357 0.82554 0.81651 0.89744 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 7.55 37.16 0.28 -1.38 16 2 C -0.10 -1.67 1.08 -152.32 -0.16 -1.84 16 3 C 0.18 4.20 4.69 -3.27 -0.02 4.18 16 4 N -0.59 -14.51 3.38 -171.00 -0.58 -15.09 16 5 C -0.23 -6.28 10.28 -15.06 -0.15 -6.44 16 6 H 0.07 1.97 7.85 -52.49 -0.41 1.56 16 7 C 0.00 -0.02 5.38 -17.43 -0.09 -0.12 16 8 N -0.91 -27.06 10.86 55.49 0.60 -26.46 16 9 Si 0.90 22.93 29.56 -169.99 -5.03 17.91 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 13 C 0.15 2.88 6.34 -3.11 -0.02 2.86 16 14 C -0.09 -1.33 1.08 -152.18 -0.16 -1.49 16 15 C -0.12 -1.43 7.59 37.16 0.28 -1.14 16 16 C 0.10 1.46 4.32 -2.47 -0.01 1.45 16 17 N -0.60 -10.44 3.31 -170.56 -0.57 -11.00 16 18 C 0.59 11.47 7.69 -12.33 -0.09 11.38 16 19 O -0.54 -12.29 17.01 5.32 0.09 -12.20 16 20 C -0.16 -2.73 5.72 -104.82 -0.60 -3.33 16 21 C -0.06 -0.71 8.01 -38.87 -0.31 -1.02 16 22 C -0.18 -1.94 10.10 -39.49 -0.40 -2.34 16 23 C 0.11 1.34 11.17 -17.47 -0.20 1.14 16 24 N -0.49 -7.58 10.35 -12.91 -0.13 -7.72 16 25 C 0.16 2.74 10.77 -17.14 -0.18 2.55 16 26 C 0.13 2.18 6.04 -2.46 -0.01 2.17 16 27 H 0.06 0.82 7.20 -51.93 -0.37 0.45 16 28 H 0.05 0.57 7.21 -51.93 -0.37 0.19 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 2.06 6.02 -51.93 -0.31 1.74 16 31 H 0.02 0.56 7.89 -51.93 -0.41 0.15 16 32 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.02 0.37 7.93 -51.93 -0.41 -0.05 16 34 H 0.04 0.72 7.40 -51.93 -0.38 0.33 16 35 H 0.06 0.76 7.18 -51.93 -0.37 0.39 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.55 7.21 -51.93 -0.37 0.17 16 38 H 0.08 1.12 4.60 -51.93 -0.24 0.88 16 39 H 0.07 0.73 7.91 -51.93 -0.41 0.32 16 40 H 0.15 1.52 5.31 -52.49 -0.28 1.24 16 41 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 43 H 0.17 2.92 7.93 -52.49 -0.42 2.50 16 44 H 0.08 1.73 7.19 -51.93 -0.37 1.35 16 45 H 0.06 0.87 7.97 -51.93 -0.41 0.46 16 LS Contribution 351.10 15.07 5.29 5.29 Total: -1.00 -33.98 351.10 -8.56 -42.54 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.38 Total: 0.09 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -1.86 Total: 6.64 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -0.67 Total: -60.27 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.03 Total: 17.91 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.98 -8.56 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982188092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.491 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds