Wall clock time and date at job start Tue Mar 31 2020 11:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53758 * 112.06704 * 2 1 4 4 N 1.47200 * 106.40454 * 217.89814 * 3 2 1 5 5 C 1.36941 * 126.70413 * 211.29345 * 4 3 2 6 6 H 1.07998 * 119.99951 * 165.83048 * 5 4 3 7 7 C 1.38810 * 119.99655 * 345.82493 * 5 4 3 8 8 N 1.31618 * 120.00179 * 350.76934 * 7 5 4 9 9 Si 1.86806 * 119.99763 * 170.76524 * 7 5 4 10 10 H 1.48498 * 109.47001 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47042 * 120.00177 * 9 7 5 12 12 H 1.48507 * 109.47083 * 240.00292 * 9 7 5 13 13 C 1.47209 * 106.59375 * 31.55589 * 4 3 2 14 14 C 1.54038 * 106.26480 * 328.37286 * 13 4 3 15 15 C 1.52997 * 112.76973 * 141.67509 * 14 13 4 16 16 C 1.54314 * 109.25303 * 267.01103 * 14 13 4 17 17 N 1.48114 * 104.71036 * 88.38209 * 16 14 13 18 18 C 1.34775 * 127.84591 * 219.78028 * 17 16 14 19 19 O 1.21548 * 120.00501 * 183.18832 * 18 17 16 20 20 C 1.47846 * 119.99948 * 3.18950 * 18 17 16 21 21 C 1.40025 * 120.55529 * 330.76273 * 20 18 17 22 22 C 1.38363 * 118.28763 * 180.02562 * 21 20 18 23 23 C 1.38357 * 119.29927 * 359.97438 * 22 21 20 24 24 N 1.31930 * 121.07943 * 0.02562 * 23 22 21 25 25 C 1.31696 * 121.87902 * 359.65909 * 24 23 22 26 26 C 1.48112 * 104.31225 * 39.78412 * 17 16 14 27 27 H 1.08997 * 109.46720 * 58.98960 * 1 2 3 28 28 H 1.09005 * 109.46883 * 178.98316 * 1 2 3 29 29 H 1.09000 * 109.47082 * 298.99103 * 1 2 3 30 30 H 1.09006 * 110.07124 * 98.66075 * 3 2 1 31 31 H 1.09003 * 110.06584 * 337.13538 * 3 2 1 32 32 H 0.97006 * 119.99874 * 179.97438 * 8 7 5 33 33 H 1.08998 * 110.06594 * 87.68980 * 13 4 3 34 34 H 1.09001 * 110.06416 * 209.21327 * 13 4 3 35 35 H 1.09000 * 109.46918 * 301.38138 * 15 14 13 36 36 H 1.09001 * 109.47178 * 61.38364 * 15 14 13 37 37 H 1.09004 * 109.47100 * 181.38003 * 15 14 13 38 38 H 1.08999 * 110.39033 * 329.57718 * 16 14 13 39 39 H 1.09001 * 110.48973 * 207.23869 * 16 14 13 40 40 H 1.08002 * 120.86001 * 359.97438 * 21 20 18 41 41 H 1.07993 * 120.34689 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.45506 * 180.02562 * 23 22 21 43 43 H 1.07999 * 119.71285 * 180.31251 * 25 24 23 44 44 H 1.08997 * 110.38595 * 201.41385 * 26 17 16 45 45 H 1.08999 * 110.39071 * 79.02917 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1077 1.4249 0.0000 4 7 3.2965 1.3916 -0.8674 5 6 4.4265 2.1540 -0.7369 6 1 5.3208 1.8918 -1.2826 7 6 4.4224 3.2640 0.0967 8 7 3.2920 3.6909 0.6185 9 14 6.0212 4.1516 0.4779 10 1 7.1414 3.4786 -0.2274 11 1 5.9255 5.5616 0.0218 12 1 6.2677 4.1206 1.9421 13 6 3.0308 0.3830 -1.9063 14 6 2.1378 -0.6871 -1.2503 15 6 1.0610 -1.2211 -2.1969 16 6 3.0265 -1.8159 -0.6871 17 7 3.3640 -1.3786 0.6873 18 6 4.5441 -1.4988 1.3269 19 8 4.6481 -1.1395 2.4834 20 6 5.7125 -2.0676 0.6218 21 6 5.5381 -3.0060 -0.4028 22 6 6.6642 -3.5082 -1.0306 23 6 7.9143 -3.0710 -0.6303 24 7 8.0482 -2.1855 0.3385 25 6 7.0070 -1.6740 0.9620 26 6 2.1099 -0.7794 1.1991 27 1 -0.3633 0.5294 -0.8808 28 1 -0.3633 -1.0276 -0.0182 29 1 -0.3633 0.4981 0.8989 30 1 2.3911 1.7137 1.0122 31 1 1.3739 2.1260 -0.3978 32 1 3.2892 4.4664 1.2013 33 1 2.5124 0.8413 -2.7485 34 1 3.9666 -0.0645 -2.2410 35 1 0.4332 -0.3967 -2.5351 36 1 1.5352 -1.6933 -3.0573 37 1 0.4473 -1.9538 -1.6728 38 1 3.9317 -1.9208 -1.2851 39 1 2.4775 -2.7572 -0.6620 40 1 4.5502 -3.3301 -0.6949 41 1 6.5682 -4.2338 -1.8247 42 1 8.7949 -3.4610 -1.1189 43 1 7.1569 -0.9475 1.7469 44 1 2.3228 -0.1014 2.0256 45 1 1.4177 -1.5596 1.5155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982188092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:20 Heat of formation + Delta-G solvation = 23.226400 kcal Electronic energy + Delta-G solvation = -28181.404156 eV Core-core repulsion = 24585.095838 eV Total energy + Delta-G solvation = -3596.308318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.09967 -40.99661 -39.43176 -36.53019 -34.84450 -33.78976 -32.94086 -32.53689 -32.30596 -28.33045 -27.85697 -27.05002 -26.55906 -25.16164 -24.43720 -23.84239 -21.61985 -21.07308 -19.32736 -18.99526 -18.09793 -17.93806 -17.42456 -17.12549 -16.74535 -16.38831 -15.68759 -15.47177 -15.30519 -15.01473 -14.80683 -14.66446 -14.43222 -14.31093 -14.05673 -13.72781 -13.66327 -13.37691 -13.16004 -12.90134 -12.87500 -12.80404 -12.52694 -12.44949 -12.15354 -11.94562 -11.82632 -11.49930 -11.28858 -11.16389 -11.09997 -10.86193 -10.75964 -10.48281 -10.23662 -9.68402 -8.83452 -7.96194 -5.27522 -0.29253 0.18979 1.31434 1.35893 1.42747 1.63680 2.01462 2.40110 2.80865 3.23677 3.26141 3.44032 3.52721 3.66987 3.71963 3.85496 3.88022 3.88886 4.06167 4.18925 4.34662 4.41288 4.46431 4.51132 4.62590 4.69771 4.74068 4.80322 4.83146 4.87909 4.97256 4.98950 5.03192 5.10203 5.13496 5.25157 5.29782 5.34668 5.42828 5.44879 5.52020 5.62397 5.64844 5.80577 6.18258 6.52298 6.86238 7.03124 7.05003 7.72956 8.43079 9.16544 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.007460 C = 0.005149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.636164 B = 3752.306537 C = 5436.504726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C 0.189 3.811 4 N -0.610 5.610 5 C -0.225 4.225 6 H 0.067 0.933 7 C -0.059 4.059 8 N -0.942 5.942 9 Si 0.957 3.043 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.300 1.300 13 C 0.139 3.861 14 C -0.073 4.073 15 C -0.117 4.117 16 C 0.102 3.898 17 N -0.600 5.600 18 C 0.577 3.423 19 O -0.594 6.594 20 C -0.187 4.187 21 C -0.050 4.050 22 C -0.159 4.159 23 C 0.109 3.891 24 N -0.512 5.512 25 C 0.130 3.870 26 C 0.124 3.876 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.047 0.953 30 H 0.022 0.978 31 H -0.009 1.009 32 H 0.245 0.755 33 H 0.018 0.982 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.122 0.878 40 H 0.176 0.824 41 H 0.192 0.808 42 H 0.197 0.803 43 H 0.134 0.866 44 H 0.034 0.966 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.466 -20.727 -8.893 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C 0.064 3.936 4 N -0.334 5.334 5 C -0.354 4.354 6 H 0.085 0.915 7 C -0.253 4.253 8 N -0.591 5.591 9 Si 0.787 3.213 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.227 1.227 13 C 0.014 3.986 14 C -0.075 4.075 15 C -0.175 4.175 16 C -0.019 4.019 17 N -0.330 5.330 18 C 0.367 3.633 19 O -0.477 6.477 20 C -0.192 4.192 21 C -0.076 4.076 22 C -0.178 4.178 23 C -0.048 4.048 24 N -0.221 5.221 25 C -0.027 4.027 26 C 0.002 3.998 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.009 0.991 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.193 0.807 41 H 0.210 0.790 42 H 0.213 0.787 43 H 0.152 0.848 44 H 0.053 0.947 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.375 -20.089 -7.908 21.720 hybrid contribution 0.300 1.736 0.794 1.932 sum -2.075 -18.354 -7.114 19.793 Atomic orbital electron populations 1.21587 0.90295 1.03461 1.01895 1.22465 0.97073 0.95252 0.94167 1.20979 0.86917 0.91755 0.93984 1.44533 1.15850 1.43534 1.29441 1.19150 0.89313 1.03787 1.23191 0.91472 1.25492 0.99387 0.98539 1.01902 1.70104 1.25277 1.26593 1.37097 0.85318 0.80332 0.78605 0.77078 1.19360 1.21073 1.22746 1.21651 0.96434 0.89653 0.90887 1.22372 0.95824 0.94242 0.95070 1.21643 0.96372 1.01324 0.98157 1.23193 0.99747 0.97940 0.81068 1.48599 1.09679 1.57938 1.16790 1.18057 0.82124 0.77866 0.85285 1.90727 1.84338 1.53171 1.19436 1.20813 0.93958 1.03027 1.01439 1.22477 1.02486 0.92066 0.90537 1.22623 0.91653 1.01624 1.01851 1.23759 0.99683 0.90429 0.90951 1.67760 1.33434 1.11350 1.09524 1.22647 0.87533 0.96020 0.96497 1.22422 0.84623 0.96633 0.96160 0.91889 0.88712 0.93360 0.95915 0.99122 0.94543 0.96436 0.94229 0.92502 0.90441 0.89295 0.89112 0.86052 0.80674 0.79037 0.78651 0.84824 0.94704 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.82 7.55 71.98 0.54 -2.28 16 2 C -0.09 -2.89 1.08 -50.77 -0.05 -2.95 16 3 C 0.19 9.28 4.69 86.50 0.41 9.69 16 4 N -0.61 -31.17 3.38 -694.91 -2.35 -33.52 16 5 C -0.22 -13.13 10.28 84.03 0.86 -12.26 16 6 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 7 C -0.06 -3.59 5.38 84.86 0.46 -3.14 16 8 N -0.94 -59.75 10.86 21.65 0.24 -59.52 16 9 Si 0.96 49.73 29.56 68.60 2.03 51.76 16 10 H -0.27 -13.35 7.11 99.48 0.71 -12.65 16 11 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.30 -16.01 7.11 99.48 0.71 -15.31 16 13 C 0.14 5.30 6.34 86.59 0.55 5.84 16 14 C -0.07 -1.98 1.08 -50.68 -0.05 -2.03 16 15 C -0.12 -1.98 7.59 71.98 0.55 -1.43 16 16 C 0.10 2.37 4.32 86.51 0.37 2.74 16 17 N -0.60 -20.46 3.31 -811.81 -2.69 -23.15 16 18 C 0.58 23.26 7.69 86.79 0.67 23.93 16 19 O -0.59 -29.68 17.01 -3.87 -0.07 -29.75 16 20 C -0.19 -6.23 5.72 -19.99 -0.11 -6.34 16 21 C -0.05 -1.08 8.01 22.73 0.18 -0.89 16 22 C -0.16 -2.52 10.10 22.33 0.23 -2.30 16 23 C 0.11 2.22 11.17 84.71 0.95 3.17 16 24 N -0.51 -15.80 10.35 -194.76 -2.01 -17.81 16 25 C 0.13 4.70 10.77 85.02 0.92 5.62 16 26 C 0.12 4.27 6.04 86.52 0.52 4.79 16 27 H 0.06 1.55 7.20 -2.39 -0.02 1.53 16 28 H 0.09 1.56 7.21 -2.38 -0.02 1.54 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.02 1.33 6.02 -2.38 -0.01 1.32 16 31 H -0.01 -0.49 7.89 -2.39 -0.02 -0.51 16 32 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 33 H 0.02 0.68 7.93 -2.39 -0.02 0.67 16 34 H 0.04 1.47 7.40 -2.39 -0.02 1.45 16 35 H 0.06 1.08 7.18 -2.39 -0.02 1.06 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.00 7.21 -2.39 -0.02 0.99 16 38 H 0.09 2.01 4.60 -2.39 -0.01 2.00 16 39 H 0.12 1.67 7.91 -2.39 -0.02 1.65 16 40 H 0.18 2.61 5.31 -2.91 -0.02 2.59 16 41 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.20 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.13 5.41 7.93 -2.91 -0.02 5.39 16 44 H 0.03 1.54 7.19 -2.39 -0.02 1.52 16 45 H 0.10 2.67 7.97 -2.39 -0.02 2.65 16 Total: -1.00 -86.76 351.10 3.11 -83.64 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 1.00 Total: 6.20 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: 6.97 Total: 22.16 kcal Atomic # 7 Polarization: -127.19 SS G_CDS: -6.82 Total: -134.01 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.07 Total: -29.75 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.03 Total: 51.76 kcal Total: -86.76 3.11 -83.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982188092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.871 kcal (2) G-P(sol) polarization free energy of solvation -86.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds