Wall clock time and date at job start Tue Mar 31 2020 11:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.54316 * 112.07383 * 2 1 4 4 N 1.50802 * 103.41950 * 213.42449 * 3 2 1 5 5 C 1.36936 * 127.62475 * 219.61936 * 4 3 2 6 6 H 1.08009 * 119.99568 * 163.79558 * 5 4 3 7 7 C 1.38811 * 120.00373 * 343.79413 * 5 4 3 8 8 N 1.31614 * 119.99958 * 351.60326 * 7 5 4 9 9 Si 1.86800 * 120.00054 * 171.60511 * 7 5 4 10 10 H 1.48507 * 109.46977 * 94.98171 * 9 7 5 11 11 H 1.48497 * 109.47045 * 214.97877 * 9 7 5 12 12 H 1.48499 * 109.47355 * 334.98191 * 9 7 5 13 13 C 1.48104 * 104.52849 * 39.78920 * 4 3 2 14 14 C 1.54310 * 104.71603 * 320.06941 * 13 4 3 15 15 C 1.53003 * 112.07894 * 145.86003 * 14 13 4 16 16 C 1.54076 * 108.90370 * 271.75496 * 14 13 4 17 17 N 1.47203 * 106.24160 * 131.02448 * 16 14 13 18 18 C 1.34776 * 126.70388 * 148.58587 * 17 16 14 19 19 O 1.21515 * 120.00148 * 179.68850 * 18 17 16 20 20 C 1.48167 * 120.00103 * 359.69134 * 18 17 16 21 21 C 1.39308 * 119.72501 * 179.97438 * 20 18 17 22 22 C 1.38597 * 119.05947 * 179.97438 * 21 20 18 23 23 C 1.38627 * 118.48477 * 0.02562 * 22 21 20 24 24 C 1.38554 * 119.35599 * 0.02562 * 23 22 21 25 25 N 1.31526 * 120.90044 * 359.97438 * 24 23 22 26 26 C 1.47208 * 106.59469 * 328.32296 * 17 16 14 27 27 H 1.09003 * 109.47426 * 297.98601 * 1 2 3 28 28 H 1.08997 * 109.47127 * 57.99313 * 1 2 3 29 29 H 1.08999 * 109.47053 * 177.99221 * 1 2 3 30 30 H 1.08993 * 110.39280 * 331.84275 * 3 2 1 31 31 H 1.09000 * 110.38786 * 94.22743 * 3 2 1 32 32 H 0.96998 * 119.99984 * 179.97438 * 8 7 5 33 33 H 1.09001 * 110.38963 * 201.25916 * 13 4 3 34 34 H 1.09002 * 110.38970 * 78.88143 * 13 4 3 35 35 H 1.09004 * 109.47059 * 302.41762 * 15 14 13 36 36 H 1.08996 * 109.46812 * 62.41375 * 15 14 13 37 37 H 1.08997 * 109.47596 * 182.41541 * 15 14 13 38 38 H 1.09004 * 110.22419 * 11.80749 * 16 14 13 39 39 H 1.09000 * 110.08215 * 250.16657 * 16 14 13 40 40 H 1.07995 * 120.47146 * 0.02562 * 21 20 18 41 41 H 1.08001 * 120.75563 * 179.72299 * 22 21 20 42 42 H 1.08003 * 120.31844 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.54921 * 179.97438 * 24 23 22 44 44 H 1.09002 * 110.06617 * 150.82772 * 26 17 16 45 45 H 1.08991 * 110.07004 * 272.30536 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1099 1.4300 0.0000 4 7 3.3759 1.2943 -0.8080 5 6 4.5862 1.8898 -0.5719 6 1 5.4754 1.5176 -1.0593 7 6 4.6705 2.9716 0.2938 8 7 3.5728 3.5297 0.7584 9 14 6.3418 3.6355 0.7993 10 1 6.7131 4.7681 -0.0866 11 1 6.2823 4.1065 2.2063 12 1 7.3585 2.5597 0.6799 13 6 3.0146 0.3776 -1.9137 14 6 2.1157 -0.6918 -1.2583 15 6 1.0222 -1.1848 -2.2082 16 6 3.0047 -1.8285 -0.7184 17 7 2.5673 -2.0712 0.6660 18 6 2.5888 -3.2478 1.3231 19 8 2.2012 -3.3086 2.4732 20 6 3.0852 -4.4671 0.6432 21 6 3.1054 -5.6801 1.3279 22 6 3.5720 -6.8121 0.6785 23 6 4.0027 -6.6912 -0.6336 24 6 3.9554 -5.4526 -1.2527 25 7 3.5078 -4.3943 -0.6128 26 6 2.1077 -0.7765 1.1948 27 1 -0.3634 0.4822 0.9075 28 1 -0.3633 0.5447 -0.8714 29 1 -0.3633 -1.0270 -0.0360 30 1 1.4179 2.1205 -0.4821 31 1 2.3224 1.7536 1.0189 32 1 3.6316 4.2854 1.3636 33 1 3.9091 -0.0832 -2.3327 34 1 2.4647 0.9137 -2.6872 35 1 0.4183 -0.3391 -2.5371 36 1 1.4812 -1.6619 -3.0740 37 1 0.3882 -1.9044 -1.6903 38 1 4.0520 -1.5267 -0.7322 39 1 2.8664 -2.7286 -1.3175 40 1 2.7616 -5.7377 2.3501 41 1 3.6038 -7.7656 1.1847 42 1 4.3724 -7.5540 -1.1678 43 1 4.2905 -5.3548 -2.2747 44 1 1.3353 -0.9331 1.9478 45 1 2.9459 -0.2302 1.6270 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982188272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:17 Heat of formation + Delta-G solvation = 47.709316 kcal Electronic energy + Delta-G solvation = -27507.656683 eV Core-core repulsion = 23912.410024 eV Total energy + Delta-G solvation = -3595.246659 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80474 -39.78639 -38.08937 -34.72828 -33.12920 -32.54170 -31.75413 -31.31503 -30.53712 -27.11010 -26.03518 -25.60581 -24.82341 -24.11257 -23.51140 -21.96466 -20.05703 -19.91415 -17.87420 -17.28849 -16.82142 -16.49599 -15.98504 -15.63391 -15.19752 -14.73169 -14.53057 -14.23961 -14.14010 -13.51359 -13.46812 -13.32874 -13.18788 -13.12074 -12.81197 -12.27718 -11.91587 -11.85268 -11.67260 -11.37693 -11.36114 -11.24667 -10.83542 -10.71730 -10.49885 -10.20920 -10.16033 -10.00723 -9.98351 -9.81865 -9.63014 -9.48429 -9.37390 -9.18436 -8.62006 -8.18672 -6.80601 -5.75813 -3.09231 0.54216 1.02297 2.84069 3.20357 3.40022 3.46438 3.47892 3.81575 4.08179 4.49101 4.58323 4.61840 4.78075 4.87572 4.97270 5.10718 5.21628 5.25386 5.49004 5.52574 5.62622 5.67749 5.76861 5.81161 5.85248 5.88201 5.93427 6.05530 6.18845 6.25742 6.30560 6.36222 6.37215 6.38643 6.51283 6.58125 6.62555 6.67624 6.83577 6.91180 7.02202 7.30747 7.56943 7.59486 7.73440 7.91046 8.19547 8.36387 9.11119 9.77027 10.54732 11.38708 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.004338 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.005835 B = 6453.442737 C = 6931.146132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.094 4.094 3 C 0.174 3.826 4 N -0.597 5.597 5 C -0.222 4.222 6 H 0.074 0.926 7 C -0.004 4.004 8 N -0.915 5.915 9 Si 0.907 3.093 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.142 3.858 14 C -0.088 4.088 15 C -0.122 4.122 16 C 0.114 3.886 17 N -0.584 5.584 18 C 0.576 3.424 19 O -0.548 6.548 20 C 0.092 3.908 21 C -0.116 4.116 22 C -0.083 4.083 23 C -0.157 4.157 24 C 0.095 3.905 25 N -0.449 5.449 26 C 0.123 3.877 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.253 0.747 33 H 0.048 0.952 34 H 0.023 0.977 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.162 0.838 44 H 0.069 0.931 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 -18.977 -4.718 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.096 4.096 3 C 0.049 3.951 4 N -0.321 5.321 5 C -0.350 4.350 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.562 5.562 9 Si 0.738 3.262 10 H -0.216 1.216 11 H -0.217 1.217 12 H -0.206 1.206 13 C 0.015 3.985 14 C -0.091 4.091 15 C -0.179 4.179 16 C -0.009 4.009 17 N -0.314 5.314 18 C 0.363 3.637 19 O -0.426 6.426 20 C -0.046 4.046 21 C -0.137 4.137 22 C -0.109 4.109 23 C -0.177 4.177 24 C -0.064 4.064 25 N -0.161 5.161 26 C 0.001 3.999 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.165 0.835 41 H 0.158 0.842 42 H 0.156 0.844 43 H 0.180 0.820 44 H 0.087 0.913 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.524 -18.032 -4.325 18.875 hybrid contribution 1.000 -0.373 0.644 1.246 sum -2.524 -18.405 -3.681 18.938 Atomic orbital electron populations 1.21679 0.94270 1.00639 1.01593 1.22509 0.94539 0.99459 0.93133 1.22020 0.86265 0.88228 0.98596 1.45492 1.08244 1.53189 1.25166 1.18963 0.83886 1.08280 1.23887 0.90831 1.24841 0.96990 0.96855 1.01464 1.69877 1.25491 1.24553 1.36254 0.86181 0.83455 0.78810 0.77787 1.21617 1.21657 1.20640 1.21647 0.95374 0.90474 0.90999 1.22435 0.95531 0.95589 0.95496 1.21634 0.97661 1.00541 0.98093 1.22669 0.98004 0.98927 0.81254 1.48383 1.60228 1.07362 1.15380 1.17464 0.79300 0.81679 0.85236 1.90761 1.49884 1.85207 1.16790 1.21252 0.98397 0.94052 0.90906 1.22127 0.97764 0.91958 1.01801 1.21614 0.95809 0.98808 0.94622 1.22354 1.00014 0.99452 0.95863 1.22938 0.95244 0.87983 1.00257 1.67877 1.08433 1.31761 1.08004 1.22229 0.99419 0.81906 0.96354 0.92825 0.92341 0.93386 0.95463 0.89437 0.93677 0.93393 0.95912 0.92295 0.93023 0.93153 0.91179 0.87671 0.83516 0.84228 0.84416 0.82047 0.91276 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 7.47 37.16 0.28 -1.68 16 2 C -0.09 -1.74 1.06 -152.33 -0.16 -1.91 16 3 C 0.17 4.02 4.87 -0.93 0.00 4.02 16 4 N -0.60 -14.68 3.43 -166.74 -0.57 -15.25 16 5 C -0.22 -6.04 10.36 -15.06 -0.16 -6.20 16 6 H 0.07 1.96 7.84 -52.48 -0.41 1.55 16 7 C 0.00 -0.12 5.42 -17.43 -0.09 -0.22 16 8 N -0.92 -26.44 10.87 55.49 0.60 -25.83 16 9 Si 0.91 22.02 29.56 -169.99 -5.03 16.99 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 C 0.14 2.85 6.09 -2.47 -0.02 2.84 16 14 C -0.09 -1.51 1.09 -152.16 -0.17 -1.68 16 15 C -0.12 -1.71 7.55 37.16 0.28 -1.43 16 16 C 0.11 1.95 5.45 -3.10 -0.02 1.93 16 17 N -0.58 -10.71 3.32 -172.41 -0.57 -11.28 16 18 C 0.58 10.43 7.87 -12.18 -0.10 10.33 16 19 O -0.55 -11.12 16.55 5.35 0.09 -11.03 16 20 C 0.09 1.36 6.73 -83.01 -0.56 0.80 16 21 C -0.12 -1.38 9.63 -39.05 -0.38 -1.75 16 22 C -0.08 -0.71 10.17 -39.31 -0.40 -1.11 16 23 C -0.16 -1.22 10.11 -39.32 -0.40 -1.62 16 24 C 0.09 0.92 11.18 -17.57 -0.20 0.72 16 25 N -0.45 -6.02 6.58 -9.80 -0.06 -6.08 16 26 C 0.12 2.40 6.11 -3.26 -0.02 2.38 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.88 7.16 -51.93 -0.37 0.50 16 29 H 0.05 0.71 7.10 -51.93 -0.37 0.34 16 30 H 0.03 0.66 7.97 -51.93 -0.41 0.25 16 31 H 0.09 2.28 6.17 -51.93 -0.32 1.96 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 33 H 0.05 0.93 7.66 -51.93 -0.40 0.53 16 34 H 0.02 0.46 7.96 -51.93 -0.41 0.05 16 35 H 0.06 0.81 7.17 -51.93 -0.37 0.44 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.69 7.09 -51.93 -0.37 0.32 16 38 H 0.07 1.35 7.47 -51.93 -0.39 0.96 16 39 H 0.11 1.63 5.16 -51.93 -0.27 1.36 16 40 H 0.15 1.70 7.64 -52.49 -0.40 1.29 16 41 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.07 1.32 7.61 -51.93 -0.40 0.92 16 45 H 0.08 1.78 7.48 -51.93 -0.39 1.39 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -32.02 353.02 -8.85 -40.86 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.53 Total: 0.88 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -2.10 Total: 5.43 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.60 Total: -58.45 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.02 -8.85 -40.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982188272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.573 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds