Wall clock time and date at job start Tue Mar 31 2020 11:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.54316 * 112.07383 * 2 1 4 4 N 1.50802 * 103.41950 * 213.42449 * 3 2 1 5 5 C 1.36936 * 127.62475 * 219.61936 * 4 3 2 6 6 H 1.08009 * 119.99568 * 163.79558 * 5 4 3 7 7 C 1.38811 * 120.00373 * 343.79413 * 5 4 3 8 8 N 1.31614 * 119.99958 * 351.60326 * 7 5 4 9 9 Si 1.86800 * 120.00054 * 171.60511 * 7 5 4 10 10 H 1.48507 * 109.46977 * 94.98171 * 9 7 5 11 11 H 1.48497 * 109.47045 * 214.97877 * 9 7 5 12 12 H 1.48499 * 109.47355 * 334.98191 * 9 7 5 13 13 C 1.48104 * 104.52849 * 39.78920 * 4 3 2 14 14 C 1.54310 * 104.71603 * 320.06941 * 13 4 3 15 15 C 1.53003 * 112.07894 * 145.86003 * 14 13 4 16 16 C 1.54076 * 108.90370 * 271.75496 * 14 13 4 17 17 N 1.47203 * 106.24160 * 131.02448 * 16 14 13 18 18 C 1.34776 * 126.70388 * 148.58587 * 17 16 14 19 19 O 1.21515 * 120.00148 * 179.68850 * 18 17 16 20 20 C 1.48167 * 120.00103 * 359.69134 * 18 17 16 21 21 C 1.39308 * 119.72501 * 179.97438 * 20 18 17 22 22 C 1.38597 * 119.05947 * 179.97438 * 21 20 18 23 23 C 1.38627 * 118.48477 * 0.02562 * 22 21 20 24 24 C 1.38554 * 119.35599 * 0.02562 * 23 22 21 25 25 N 1.31526 * 120.90044 * 359.97438 * 24 23 22 26 26 C 1.47208 * 106.59469 * 328.32296 * 17 16 14 27 27 H 1.09003 * 109.47426 * 297.98601 * 1 2 3 28 28 H 1.08997 * 109.47127 * 57.99313 * 1 2 3 29 29 H 1.08999 * 109.47053 * 177.99221 * 1 2 3 30 30 H 1.08993 * 110.39280 * 331.84275 * 3 2 1 31 31 H 1.09000 * 110.38786 * 94.22743 * 3 2 1 32 32 H 0.96998 * 119.99984 * 179.97438 * 8 7 5 33 33 H 1.09001 * 110.38963 * 201.25916 * 13 4 3 34 34 H 1.09002 * 110.38970 * 78.88143 * 13 4 3 35 35 H 1.09004 * 109.47059 * 302.41762 * 15 14 13 36 36 H 1.08996 * 109.46812 * 62.41375 * 15 14 13 37 37 H 1.08997 * 109.47596 * 182.41541 * 15 14 13 38 38 H 1.09004 * 110.22419 * 11.80749 * 16 14 13 39 39 H 1.09000 * 110.08215 * 250.16657 * 16 14 13 40 40 H 1.07995 * 120.47146 * 0.02562 * 21 20 18 41 41 H 1.08001 * 120.75563 * 179.72299 * 22 21 20 42 42 H 1.08003 * 120.31844 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.54921 * 179.97438 * 24 23 22 44 44 H 1.09002 * 110.06617 * 150.82772 * 26 17 16 45 45 H 1.08991 * 110.07004 * 272.30536 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1099 1.4300 0.0000 4 7 3.3759 1.2943 -0.8080 5 6 4.5862 1.8898 -0.5719 6 1 5.4754 1.5176 -1.0593 7 6 4.6705 2.9716 0.2938 8 7 3.5728 3.5297 0.7584 9 14 6.3418 3.6355 0.7993 10 1 6.7131 4.7681 -0.0866 11 1 6.2823 4.1065 2.2063 12 1 7.3585 2.5597 0.6799 13 6 3.0146 0.3776 -1.9137 14 6 2.1157 -0.6918 -1.2583 15 6 1.0222 -1.1848 -2.2082 16 6 3.0047 -1.8285 -0.7184 17 7 2.5673 -2.0712 0.6660 18 6 2.5888 -3.2478 1.3231 19 8 2.2012 -3.3086 2.4732 20 6 3.0852 -4.4671 0.6432 21 6 3.1054 -5.6801 1.3279 22 6 3.5720 -6.8121 0.6785 23 6 4.0027 -6.6912 -0.6336 24 6 3.9554 -5.4526 -1.2527 25 7 3.5078 -4.3943 -0.6128 26 6 2.1077 -0.7765 1.1948 27 1 -0.3634 0.4822 0.9075 28 1 -0.3633 0.5447 -0.8714 29 1 -0.3633 -1.0270 -0.0360 30 1 1.4179 2.1205 -0.4821 31 1 2.3224 1.7536 1.0189 32 1 3.6316 4.2854 1.3636 33 1 3.9091 -0.0832 -2.3327 34 1 2.4647 0.9137 -2.6872 35 1 0.4183 -0.3391 -2.5371 36 1 1.4812 -1.6619 -3.0740 37 1 0.3882 -1.9044 -1.6903 38 1 4.0520 -1.5267 -0.7322 39 1 2.8664 -2.7286 -1.3175 40 1 2.7616 -5.7377 2.3501 41 1 3.6038 -7.7656 1.1847 42 1 4.3724 -7.5540 -1.1678 43 1 4.2905 -5.3548 -2.2747 44 1 1.3353 -0.9331 1.9478 45 1 2.9459 -0.2302 1.6270 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982188272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:16 Heat of formation + Delta-G solvation = 28.034336 kcal Electronic energy + Delta-G solvation = -27508.509854 eV Core-core repulsion = 23912.410024 eV Total energy + Delta-G solvation = -3596.099830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.03341 -40.97250 -39.46539 -36.41656 -34.70182 -33.63054 -33.06331 -32.36613 -32.28216 -28.54494 -27.78444 -26.99952 -26.45122 -25.19765 -24.34588 -23.64280 -21.67632 -21.18091 -19.30507 -18.90393 -18.17565 -17.73909 -17.09512 -16.83090 -16.59292 -16.42090 -15.69985 -15.64849 -15.54527 -15.13571 -14.77097 -14.61052 -14.49385 -14.35310 -14.11120 -13.52083 -13.45291 -13.26453 -13.04725 -12.95317 -12.76114 -12.74715 -12.59867 -12.47151 -12.08246 -11.91569 -11.74080 -11.51299 -11.43349 -11.19139 -11.10411 -10.92764 -10.71594 -10.26066 -10.18828 -9.65942 -8.82667 -7.88297 -5.22007 -0.35130 0.28820 1.43479 1.45092 1.53619 1.66541 1.88491 2.48411 2.87936 3.05605 3.31296 3.46981 3.61199 3.68286 3.80290 3.97428 3.99443 4.07481 4.11271 4.25093 4.29295 4.40389 4.43649 4.53434 4.67249 4.76259 4.87276 4.87452 4.88374 4.95136 4.97833 5.02634 5.05659 5.16867 5.18113 5.20606 5.24934 5.33718 5.39779 5.44862 5.51059 5.62907 5.71894 5.76804 6.19028 6.48911 6.70537 7.01213 7.03580 7.70828 8.51431 9.25611 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.004338 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.005835 B = 6453.442737 C = 6931.146132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.085 4.085 3 C 0.182 3.818 4 N -0.620 5.620 5 C -0.229 4.229 6 H 0.075 0.925 7 C -0.060 4.060 8 N -0.945 5.945 9 Si 0.968 3.032 10 H -0.284 1.284 11 H -0.297 1.297 12 H -0.273 1.273 13 C 0.140 3.860 14 C -0.078 4.078 15 C -0.114 4.114 16 C 0.125 3.875 17 N -0.590 5.590 18 C 0.570 3.430 19 O -0.582 6.582 20 C 0.057 3.943 21 C -0.122 4.122 22 C -0.076 4.076 23 C -0.132 4.132 24 C 0.088 3.912 25 N -0.475 5.475 26 C 0.128 3.872 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.011 0.989 31 H 0.048 0.952 32 H 0.247 0.753 33 H 0.053 0.947 34 H 0.029 0.971 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.130 0.870 40 H 0.140 0.860 41 H 0.177 0.823 42 H 0.183 0.817 43 H 0.193 0.807 44 H 0.068 0.932 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 -22.729 -7.055 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.087 4.087 3 C 0.057 3.943 4 N -0.344 5.344 5 C -0.358 4.358 6 H 0.093 0.907 7 C -0.254 4.254 8 N -0.593 5.593 9 Si 0.797 3.203 10 H -0.211 1.211 11 H -0.224 1.224 12 H -0.198 1.198 13 C 0.014 3.986 14 C -0.080 4.080 15 C -0.172 4.172 16 C 0.003 3.997 17 N -0.319 5.319 18 C 0.360 3.640 19 O -0.463 6.463 20 C -0.080 4.080 21 C -0.144 4.144 22 C -0.101 4.101 23 C -0.151 4.151 24 C -0.072 4.072 25 N -0.187 5.187 26 C 0.005 3.995 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.148 0.852 40 H 0.158 0.842 41 H 0.194 0.806 42 H 0.200 0.800 43 H 0.210 0.790 44 H 0.086 0.914 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.308 -21.813 -6.693 23.055 hybrid contribution 1.017 0.645 1.325 1.791 sum -2.291 -21.168 -5.368 21.957 Atomic orbital electron populations 1.21635 0.91597 1.01951 1.02249 1.22371 0.96439 0.96269 0.93612 1.21778 0.85827 0.90698 0.96019 1.45738 1.07935 1.53683 1.27083 1.19287 0.85198 1.08012 1.23340 0.90685 1.25573 1.00066 0.97636 1.02083 1.70060 1.27238 1.24965 1.37033 0.85219 0.79964 0.78272 0.76835 1.21070 1.22352 1.19770 1.21826 0.96305 0.90344 0.90099 1.22430 0.95941 0.94527 0.95116 1.21601 0.96536 1.01085 0.97937 1.22614 0.96305 0.99763 0.80988 1.48441 1.60629 1.06996 1.15802 1.18191 0.78298 0.82539 0.85000 1.90715 1.51345 1.85949 1.18318 1.20761 1.01871 0.93106 0.92219 1.22219 0.98156 0.92274 1.01723 1.22055 0.94154 0.98888 0.95047 1.22866 0.97009 1.00005 0.95267 1.23570 0.94324 0.87891 1.01391 1.67648 1.09508 1.33927 1.07604 1.21957 0.97794 0.82848 0.96871 0.92916 0.91029 0.91620 0.97112 0.93336 0.94379 0.92847 0.95303 0.91661 0.90715 0.92135 0.93955 0.85228 0.84235 0.80561 0.79960 0.78995 0.91384 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.60 7.47 71.98 0.54 -3.07 16 2 C -0.08 -3.21 1.06 -50.77 -0.05 -3.27 16 3 C 0.18 8.85 4.87 85.98 0.42 9.27 16 4 N -0.62 -31.61 3.43 -681.43 -2.33 -33.95 16 5 C -0.23 -12.91 10.36 84.03 0.87 -12.04 16 6 H 0.08 4.09 7.84 -2.91 -0.02 4.07 16 7 C -0.06 -3.44 5.42 84.86 0.46 -2.98 16 8 N -0.94 -57.29 10.87 21.65 0.24 -57.05 16 9 Si 0.97 46.75 29.56 68.60 2.03 48.77 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.14 5.61 6.09 86.52 0.53 6.13 16 14 C -0.08 -2.62 1.09 -50.66 -0.06 -2.67 16 15 C -0.11 -2.86 7.55 71.98 0.54 -2.32 16 16 C 0.13 4.27 5.45 86.61 0.47 4.75 16 17 N -0.59 -22.28 3.32 -817.69 -2.71 -24.99 16 18 C 0.57 21.25 7.87 86.88 0.68 21.94 16 19 O -0.58 -24.75 16.55 -3.76 -0.06 -24.81 16 20 C 0.06 1.64 6.73 41.91 0.28 1.92 16 21 C -0.12 -2.74 9.63 22.61 0.22 -2.53 16 22 C -0.08 -0.99 10.17 22.45 0.23 -0.76 16 23 C -0.13 -1.35 10.11 22.44 0.23 -1.13 16 24 C 0.09 1.35 11.18 84.81 0.95 2.30 16 25 N -0.47 -11.78 6.58 -184.92 -1.22 -13.00 16 26 C 0.13 5.31 6.11 86.50 0.53 5.83 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 2.03 7.16 -2.39 -0.02 2.01 16 29 H 0.06 1.82 7.10 -2.39 -0.02 1.80 16 30 H 0.01 0.55 7.97 -2.39 -0.02 0.53 16 31 H 0.05 2.72 6.17 -2.39 -0.01 2.71 16 32 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 33 H 0.05 2.06 7.66 -2.39 -0.02 2.04 16 34 H 0.03 1.14 7.96 -2.39 -0.02 1.12 16 35 H 0.06 1.58 7.17 -2.39 -0.02 1.57 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.06 1.43 7.09 -2.39 -0.02 1.42 16 38 H 0.04 1.66 7.47 -2.38 -0.02 1.65 16 39 H 0.13 3.80 5.16 -2.39 -0.01 3.79 16 40 H 0.14 3.21 7.64 -2.91 -0.02 3.19 16 41 H 0.18 0.99 8.06 -2.91 -0.02 0.96 16 42 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 43 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 44 H 0.07 2.77 7.61 -2.39 -0.02 2.75 16 45 H 0.04 1.82 7.48 -2.39 -0.02 1.80 16 Total: -1.00 -75.50 353.02 3.77 -71.73 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.99 Total: 11.92 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 6.84 Total: 21.38 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -6.03 Total: -128.99 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.06 Total: -24.81 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -75.50 3.77 -71.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982188272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.765 kcal (2) G-P(sol) polarization free energy of solvation -75.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds