Wall clock time and date at job start Tue Mar 31 2020 10:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00165 * 2 1 4 4 H 1.48508 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47095 * 300.00003 * 3 2 1 6 6 H 1.48499 * 109.46968 * 60.00330 * 3 2 1 7 7 C 1.38813 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00156 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.47369 * 125.57930 * 359.96217 * 9 7 2 11 11 C 1.54866 * 104.81977 * 204.72845 * 10 9 7 12 12 C 1.54916 * 101.76864 * 322.92886 * 11 10 9 13 13 N 1.46499 * 112.77791 * 273.54677 * 12 11 10 14 14 C 1.34777 * 119.99987 * 295.93856 * 13 12 11 15 15 O 1.21277 * 120.00395 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.00117 * 180.02562 * 14 13 12 17 17 C 1.50694 * 109.47381 * 179.97438 * 16 14 13 18 18 C 1.38678 * 120.41560 * 89.99704 * 17 16 14 19 19 C 1.38632 * 118.41646 * 180.02562 * 18 17 16 20 20 C 1.38230 * 119.16354 * 359.97438 * 19 18 17 21 21 N 1.31854 * 120.76309 * 359.97438 * 20 19 18 22 22 C 1.31885 * 121.72447 * 359.70842 * 21 20 19 23 23 C 1.53580 * 109.09370 * 148.11293 * 12 11 10 24 24 C 1.54218 * 106.67428 * 246.90757 * 23 12 11 25 25 C 1.54752 * 104.15751 * 24.94994 * 24 23 12 26 26 C 1.46982 * 125.58067 * 180.02562 * 9 7 2 27 27 H 1.09004 * 112.53385 * 301.34732 * 26 9 7 28 28 H 0.97003 * 119.99275 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.36997 * 85.89618 * 10 9 7 30 30 H 1.08995 * 110.36973 * 323.56245 * 10 9 7 31 31 H 1.09006 * 110.97362 * 204.80680 * 11 10 9 32 32 H 1.09004 * 111.00023 * 81.06082 * 11 10 9 33 33 H 0.97004 * 120.00209 * 115.93394 * 13 12 11 34 34 H 1.09003 * 109.46763 * 299.99760 * 16 14 13 35 35 H 1.09001 * 109.47020 * 59.99420 * 16 14 13 36 36 H 1.07999 * 120.79236 * 359.97438 * 18 17 16 37 37 H 1.08001 * 120.41847 * 179.97438 * 19 18 17 38 38 H 1.07996 * 119.61816 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.62100 * 180.30667 * 22 21 20 40 40 H 1.09002 * 110.01924 * 127.60702 * 23 12 11 41 41 H 1.09004 * 110.05863 * 6.23368 * 23 12 11 42 42 H 1.09001 * 110.49274 * 266.27851 * 24 23 12 43 43 H 1.09003 * 110.49693 * 143.61975 * 24 23 12 44 44 H 1.09001 * 110.66813 * 203.75923 * 25 24 23 45 45 H 1.08994 * 110.81726 * 80.68821 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1412 -2.5312 0.0008 11 6 -0.4027 -3.9235 0.6266 12 6 0.7721 -4.7539 0.0518 13 7 0.4722 -5.3262 -1.2630 14 6 -0.5122 -6.2376 -1.3926 15 8 -1.1495 -6.5844 -0.4208 16 6 -0.8203 -6.8268 -2.7451 17 6 -1.9531 -7.8124 -2.6174 18 6 -3.2674 -7.3939 -2.7611 19 6 -4.2771 -8.3354 -2.6351 20 6 -3.9427 -9.6507 -2.3727 21 7 -2.6815 -10.0130 -2.2432 22 6 -1.6951 -9.1458 -2.3629 23 6 1.1766 -5.8263 1.0741 24 6 2.5909 -5.4575 1.5660 25 6 2.6853 -3.9301 1.3362 26 6 1.9331 -3.7264 -0.0005 27 1 2.5827 -3.8902 -0.8604 28 1 -0.4849 0.8401 0.0004 29 1 -0.5269 -2.4947 -1.0181 30 1 -0.5981 -1.7503 0.6085 31 1 -1.3615 -4.3249 0.2983 32 1 -0.3529 -3.8784 1.7145 33 1 0.9821 -5.0492 -2.0403 34 1 -1.1069 -6.0302 -3.4316 35 1 0.0632 -7.3369 -3.1289 36 1 -3.4988 -6.3590 -2.9655 37 1 -5.3119 -8.0448 -2.7405 38 1 -4.7234 -10.3902 -2.2727 39 1 -0.6740 -9.4807 -2.2552 40 1 1.1907 -6.8076 0.5997 41 1 0.4786 -5.8269 1.9113 42 1 3.3471 -5.9792 0.9794 43 1 2.6997 -5.6915 2.6251 44 1 3.7257 -3.6185 1.2438 45 1 2.1923 -3.3860 2.1417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990254377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:19 Heat of formation + Delta-G solvation = 24.895496 kcal Electronic energy + Delta-G solvation = -26734.638801 eV Core-core repulsion = 23138.402861 eV Total energy + Delta-G solvation = -3596.235941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57168 -39.88070 -38.08691 -34.29316 -33.62350 -33.39789 -32.01281 -31.44699 -29.89050 -28.07785 -26.74219 -25.79307 -23.86472 -23.66442 -22.75039 -21.08622 -19.99796 -19.50419 -18.81743 -17.24482 -17.04812 -16.80340 -16.54785 -15.90051 -15.14847 -15.01144 -14.73189 -14.27199 -14.03394 -13.74778 -13.55314 -13.33020 -13.13883 -13.09019 -12.89619 -12.36854 -12.20471 -11.84290 -11.63634 -11.60926 -11.18413 -11.00691 -10.87389 -10.68499 -10.53966 -10.15815 -10.08176 -9.97628 -9.92145 -9.77265 -9.65276 -9.57235 -9.43266 -9.00874 -8.69043 -8.55571 -6.88559 -5.67812 -3.10972 0.99433 1.20525 2.84276 3.34879 3.37005 3.42512 3.44744 3.81095 4.30122 4.44576 4.55756 4.68116 4.81569 4.88190 4.89882 5.09875 5.14826 5.21443 5.31145 5.32030 5.49406 5.54352 5.63159 5.65763 5.82023 5.85229 5.98690 6.00217 6.06997 6.13760 6.14500 6.25722 6.35166 6.40903 6.52982 6.57952 6.59419 6.75813 6.77452 6.97875 7.11572 7.50950 7.62302 7.78793 7.85616 7.86944 8.33584 8.48812 9.18481 9.79512 10.43501 11.34775 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.003336 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.343200 B = 8391.105277 C = 9225.244106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.153 3.847 11 C -0.141 4.141 12 C 0.161 3.839 13 N -0.705 5.705 14 C 0.513 3.487 15 O -0.531 6.531 16 C -0.102 4.102 17 C -0.110 4.110 18 C -0.061 4.061 19 C -0.171 4.171 20 C 0.092 3.908 21 N -0.486 5.486 22 C 0.111 3.889 23 C -0.109 4.109 24 C -0.125 4.125 25 C -0.130 4.130 26 C 0.162 3.838 27 H 0.046 0.954 28 H 0.251 0.749 29 H 0.008 0.992 30 H 0.107 0.893 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.571 -15.430 -5.918 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.028 3.972 11 C -0.180 4.180 12 C 0.075 3.925 13 N -0.355 5.355 14 C 0.299 3.701 15 O -0.407 6.407 16 C -0.143 4.143 17 C -0.112 4.112 18 C -0.087 4.087 19 C -0.191 4.191 20 C -0.065 4.065 21 N -0.194 5.194 22 C -0.046 4.046 23 C -0.148 4.148 24 C -0.163 4.163 25 C -0.170 4.170 26 C 0.054 3.946 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.026 0.974 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.234 0.766 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.170 0.830 39 H 0.169 0.831 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.891 -16.301 -5.045 17.307 hybrid contribution 0.459 1.988 -0.631 2.135 sum -2.431 -14.314 -5.676 15.589 Atomic orbital electron populations 1.69817 1.04876 1.24592 1.57562 1.24784 0.95681 0.97687 1.02463 0.86028 0.78653 0.83748 0.77231 1.20549 1.21844 1.21776 1.19081 0.90475 0.82294 1.42944 0.90457 1.44522 1.01798 0.99191 1.86416 1.21962 0.84356 0.92978 0.97857 1.23311 0.96664 0.98037 1.00001 1.21622 0.96785 0.92255 0.81834 1.45903 1.36227 1.42388 1.10995 1.20306 0.80006 0.79436 0.90378 1.90717 1.49517 1.60482 1.40019 1.20641 0.98156 0.98744 0.96722 1.20303 0.94667 0.95340 1.00898 1.21485 0.92048 1.00013 0.95177 1.22107 1.00441 0.94570 1.01987 1.22719 0.93497 0.94825 0.95467 1.67665 1.00581 1.38281 1.12896 1.22563 0.98525 0.88998 0.94499 1.22252 0.96613 0.97650 0.98310 1.22365 0.96407 0.97316 1.00203 1.22941 1.00370 0.93949 0.99729 1.21774 0.91636 0.85874 0.95357 0.93666 0.93816 0.97366 0.87494 0.91719 0.91453 0.76642 0.87716 0.87780 0.84887 0.84841 0.82983 0.83139 0.92355 0.91293 0.92370 0.92280 0.92390 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.21 10.07 55.49 0.56 -25.65 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.22 -5.81 10.01 -15.06 -0.15 -5.96 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.30 3.03 -161.16 -0.49 -14.79 16 10 C 0.15 3.66 5.90 -2.58 -0.02 3.65 16 11 C -0.14 -2.84 5.77 -24.74 -0.14 -2.98 16 12 C 0.16 2.81 0.74 -129.38 -0.10 2.71 16 13 N -0.70 -10.32 5.25 -45.36 -0.24 -10.56 16 14 C 0.51 7.32 6.99 -10.98 -0.08 7.24 16 15 O -0.53 -9.52 13.91 5.56 0.08 -9.44 16 16 C -0.10 -1.03 5.86 -29.04 -0.17 -1.20 16 17 C -0.11 -1.26 4.39 -104.48 -0.46 -1.72 16 18 C -0.06 -0.68 9.86 -39.27 -0.39 -1.06 16 19 C -0.17 -1.71 10.11 -39.44 -0.40 -2.11 16 20 C 0.09 0.98 11.18 -17.55 -0.20 0.78 16 21 N -0.49 -6.19 10.36 -13.25 -0.14 -6.33 16 22 C 0.11 1.33 10.86 -17.55 -0.19 1.14 16 23 C -0.11 -1.76 5.22 -25.79 -0.13 -1.90 16 24 C -0.12 -1.85 6.84 -25.17 -0.17 -2.02 16 25 C -0.13 -2.31 6.21 -24.90 -0.15 -2.46 16 26 C 0.16 3.13 3.65 -65.63 -0.24 2.89 16 27 H 0.05 0.85 7.99 -51.93 -0.41 0.44 16 28 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.11 2.92 5.83 -51.93 -0.30 2.62 16 31 H 0.06 1.32 6.84 -51.93 -0.36 0.97 16 32 H 0.07 1.38 7.62 -51.93 -0.40 0.98 16 33 H 0.40 5.04 8.50 -40.82 -0.35 4.69 16 34 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 36 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.06 0.92 7.40 -51.93 -0.38 0.54 16 41 H 0.07 1.17 7.37 -51.93 -0.38 0.79 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -32.18 359.34 -9.69 -41.86 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.77 Total: 6.36 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -3.08 Total: -3.39 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.30 Total: -57.33 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.18 -9.69 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990254377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.760 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds