Wall clock time and date at job start Tue Mar 31 2020 10:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00165 * 2 1 4 4 H 1.48508 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47095 * 300.00003 * 3 2 1 6 6 H 1.48499 * 109.46968 * 60.00330 * 3 2 1 7 7 C 1.38813 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00156 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.47369 * 125.57930 * 359.96217 * 9 7 2 11 11 C 1.54866 * 104.81977 * 204.72845 * 10 9 7 12 12 C 1.54916 * 101.76864 * 322.92886 * 11 10 9 13 13 N 1.46499 * 112.77791 * 273.54677 * 12 11 10 14 14 C 1.34777 * 119.99987 * 295.93856 * 13 12 11 15 15 O 1.21277 * 120.00395 * 359.97438 * 14 13 12 16 16 C 1.50705 * 120.00117 * 180.02562 * 14 13 12 17 17 C 1.50694 * 109.47381 * 179.97438 * 16 14 13 18 18 C 1.38678 * 120.41560 * 89.99704 * 17 16 14 19 19 C 1.38632 * 118.41646 * 180.02562 * 18 17 16 20 20 C 1.38230 * 119.16354 * 359.97438 * 19 18 17 21 21 N 1.31854 * 120.76309 * 359.97438 * 20 19 18 22 22 C 1.31885 * 121.72447 * 359.70842 * 21 20 19 23 23 C 1.53580 * 109.09370 * 148.11293 * 12 11 10 24 24 C 1.54218 * 106.67428 * 246.90757 * 23 12 11 25 25 C 1.54752 * 104.15751 * 24.94994 * 24 23 12 26 26 C 1.46982 * 125.58067 * 180.02562 * 9 7 2 27 27 H 1.09004 * 112.53385 * 301.34732 * 26 9 7 28 28 H 0.97003 * 119.99275 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.36997 * 85.89618 * 10 9 7 30 30 H 1.08995 * 110.36973 * 323.56245 * 10 9 7 31 31 H 1.09006 * 110.97362 * 204.80680 * 11 10 9 32 32 H 1.09004 * 111.00023 * 81.06082 * 11 10 9 33 33 H 0.97004 * 120.00209 * 115.93394 * 13 12 11 34 34 H 1.09003 * 109.46763 * 299.99760 * 16 14 13 35 35 H 1.09001 * 109.47020 * 59.99420 * 16 14 13 36 36 H 1.07999 * 120.79236 * 359.97438 * 18 17 16 37 37 H 1.08001 * 120.41847 * 179.97438 * 19 18 17 38 38 H 1.07996 * 119.61816 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.62100 * 180.30667 * 22 21 20 40 40 H 1.09002 * 110.01924 * 127.60702 * 23 12 11 41 41 H 1.09004 * 110.05863 * 6.23368 * 23 12 11 42 42 H 1.09001 * 110.49274 * 266.27851 * 24 23 12 43 43 H 1.09003 * 110.49693 * 143.61975 * 24 23 12 44 44 H 1.09001 * 110.66813 * 203.75923 * 25 24 23 45 45 H 1.08994 * 110.81726 * 80.68821 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1412 -2.5312 0.0008 11 6 -0.4027 -3.9235 0.6266 12 6 0.7721 -4.7539 0.0518 13 7 0.4722 -5.3262 -1.2630 14 6 -0.5122 -6.2376 -1.3926 15 8 -1.1495 -6.5844 -0.4208 16 6 -0.8203 -6.8268 -2.7451 17 6 -1.9531 -7.8124 -2.6174 18 6 -3.2674 -7.3939 -2.7611 19 6 -4.2771 -8.3354 -2.6351 20 6 -3.9427 -9.6507 -2.3727 21 7 -2.6815 -10.0130 -2.2432 22 6 -1.6951 -9.1458 -2.3629 23 6 1.1766 -5.8263 1.0741 24 6 2.5909 -5.4575 1.5660 25 6 2.6853 -3.9301 1.3362 26 6 1.9331 -3.7264 -0.0005 27 1 2.5827 -3.8902 -0.8604 28 1 -0.4849 0.8401 0.0004 29 1 -0.5269 -2.4947 -1.0181 30 1 -0.5981 -1.7503 0.6085 31 1 -1.3615 -4.3249 0.2983 32 1 -0.3529 -3.8784 1.7145 33 1 0.9821 -5.0492 -2.0403 34 1 -1.1069 -6.0302 -3.4316 35 1 0.0632 -7.3369 -3.1289 36 1 -3.4988 -6.3590 -2.9655 37 1 -5.3119 -8.0448 -2.7405 38 1 -4.7234 -10.3902 -2.2727 39 1 -0.6740 -9.4807 -2.2552 40 1 1.1907 -6.8076 0.5997 41 1 0.4786 -5.8269 1.9113 42 1 3.3471 -5.9792 0.9794 43 1 2.6997 -5.6915 2.6251 44 1 3.7257 -3.6185 1.2438 45 1 2.1923 -3.3860 2.1417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990254377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:18 Heat of formation + Delta-G solvation = 4.864144 kcal Electronic energy + Delta-G solvation = -26735.507426 eV Core-core repulsion = 23138.402861 eV Total energy + Delta-G solvation = -3597.104565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.70397 -40.96133 -39.40332 -36.03940 -34.72233 -34.45871 -33.31555 -32.79737 -31.52110 -29.08937 -28.41537 -27.18217 -25.72468 -24.47901 -23.71333 -22.47202 -21.55603 -20.86815 -20.18141 -18.89704 -18.17811 -17.84949 -17.39037 -17.22309 -16.85410 -16.08076 -16.07787 -15.66311 -15.31434 -15.07995 -14.81825 -14.55274 -14.38616 -14.15836 -13.92928 -13.87256 -13.55595 -13.29727 -12.99412 -12.91485 -12.77264 -12.66523 -12.43858 -12.27989 -11.98071 -11.88501 -11.68967 -11.56070 -11.46560 -11.24882 -10.88146 -10.72590 -10.60468 -10.39062 -9.90194 -9.86467 -8.85398 -7.73248 -5.17694 0.18440 0.38341 1.48382 1.49118 1.58887 1.73653 2.24569 2.51722 2.94466 3.36286 3.39912 3.53374 3.65458 3.76257 3.93956 3.97613 3.98004 4.05967 4.11791 4.14377 4.37241 4.43097 4.47805 4.51493 4.59965 4.60758 4.67856 4.77683 4.81684 4.89831 4.93827 4.98602 5.09282 5.18273 5.21286 5.22964 5.33069 5.34823 5.49108 5.52393 5.66045 5.73341 5.81386 5.86061 6.31969 6.67405 7.05205 7.13093 7.36744 7.81527 8.45326 9.28199 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020808 B = 0.003336 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.343200 B = 8391.105277 C = 9225.244106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.221 4.221 8 H 0.085 0.915 9 N -0.611 5.611 10 C 0.164 3.836 11 C -0.129 4.129 12 C 0.173 3.827 13 N -0.702 5.702 14 C 0.513 3.487 15 O -0.570 6.570 16 C -0.091 4.091 17 C -0.121 4.121 18 C -0.078 4.078 19 C -0.172 4.172 20 C 0.081 3.919 21 N -0.513 5.513 22 C 0.096 3.904 23 C -0.103 4.103 24 C -0.110 4.110 25 C -0.126 4.126 26 C 0.154 3.846 27 H 0.061 0.939 28 H 0.244 0.756 29 H -0.014 1.014 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.411 0.589 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.159 0.841 38 H 0.177 0.823 39 H 0.164 0.836 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 -16.955 -6.804 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.225 1.225 7 C -0.350 4.350 8 H 0.103 0.897 9 N -0.335 5.335 10 C 0.039 3.961 11 C -0.168 4.168 12 C 0.085 3.915 13 N -0.353 5.353 14 C 0.301 3.699 15 O -0.448 6.448 16 C -0.131 4.131 17 C -0.123 4.123 18 C -0.104 4.104 19 C -0.192 4.192 20 C -0.075 4.075 21 N -0.222 5.222 22 C -0.060 4.060 23 C -0.142 4.142 24 C -0.148 4.148 25 C -0.166 4.166 26 C 0.048 3.952 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.004 0.996 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.248 0.752 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.177 0.823 38 H 0.194 0.806 39 H 0.181 0.819 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.426 -17.861 -5.955 18.882 hybrid contribution -0.041 2.429 -0.353 2.455 sum -1.467 -15.432 -6.308 16.736 Atomic orbital electron populations 1.70071 1.06258 1.24597 1.59225 1.25572 0.96462 1.00841 1.03310 0.85040 0.78303 0.79809 0.76385 1.18841 1.22294 1.22471 1.19438 0.91006 0.83306 1.41296 0.89686 1.44704 1.01901 1.00556 1.86344 1.21603 0.84618 0.93921 0.95985 1.23101 0.97874 0.96503 0.99340 1.21376 0.94338 0.92164 0.83594 1.45845 1.36806 1.42366 1.10316 1.21000 0.78813 0.78525 0.91556 1.90706 1.50662 1.61677 1.41797 1.20652 0.99188 0.99080 0.94188 1.20463 0.95256 0.95479 1.01121 1.21798 0.92457 1.00792 0.95321 1.22425 1.01623 0.94178 1.00944 1.23202 0.93542 0.95864 0.94935 1.67674 1.01534 1.39108 1.13860 1.22854 0.99148 0.89325 0.94701 1.22175 0.97210 0.97408 0.97401 1.22305 0.96002 0.94789 1.01714 1.22810 1.00081 0.96131 0.97624 1.22033 0.92540 0.83965 0.96705 0.92126 0.94665 0.99600 0.91335 0.92232 0.92231 0.75243 0.85828 0.84462 0.84035 0.82326 0.80600 0.81866 0.91421 0.92596 0.89811 0.90717 0.91563 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.13 10.07 21.65 0.22 -55.91 16 2 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 3 Si 0.98 44.77 29.55 68.60 2.03 46.80 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.22 -11.75 10.01 84.03 0.84 -10.91 16 8 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.61 -29.58 3.03 -663.79 -2.01 -31.59 16 10 C 0.16 8.12 5.90 86.85 0.51 8.64 16 11 C -0.13 -5.29 5.77 31.89 0.18 -5.11 16 12 C 0.17 5.81 0.74 5.18 0.00 5.81 16 13 N -0.70 -19.25 5.25 -415.81 -2.18 -21.44 16 14 C 0.51 13.73 6.99 87.66 0.61 14.34 16 15 O -0.57 -19.90 13.91 -3.02 -0.04 -19.94 16 16 C -0.09 -1.60 5.86 29.10 0.17 -1.43 16 17 C -0.12 -2.57 4.39 -19.77 -0.09 -2.66 16 18 C -0.08 -1.61 9.86 22.47 0.22 -1.39 16 19 C -0.17 -3.18 10.11 22.36 0.23 -2.95 16 20 C 0.08 1.62 11.18 84.69 0.95 2.57 16 21 N -0.51 -12.54 10.36 -195.84 -2.03 -14.57 16 22 C 0.10 2.17 10.86 84.67 0.92 3.09 16 23 C -0.10 -3.11 5.22 31.20 0.16 -2.95 16 24 C -0.11 -2.92 6.84 31.60 0.22 -2.71 16 25 C -0.13 -4.29 6.21 31.78 0.20 -4.09 16 26 C 0.15 5.77 3.65 46.22 0.17 5.93 16 27 H 0.06 2.12 7.99 -2.38 -0.02 2.10 16 28 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 29 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H 0.07 3.96 5.83 -2.39 -0.01 3.94 16 31 H 0.06 2.50 6.84 -2.38 -0.02 2.48 16 32 H 0.06 2.51 7.62 -2.38 -0.02 2.49 16 33 H 0.41 9.36 8.50 -92.71 -0.79 8.57 16 34 H 0.12 1.74 8.10 -2.39 -0.02 1.72 16 35 H 0.14 1.51 8.09 -2.39 -0.02 1.49 16 36 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 37 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.18 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.07 1.95 7.40 -2.39 -0.02 1.93 16 41 H 0.06 1.84 7.37 -2.39 -0.02 1.82 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.05 1.83 8.09 -2.39 -0.02 1.81 16 Total: -1.00 -71.69 359.34 1.95 -69.74 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.21 Total: 24.11 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 5.76 Total: 2.80 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -6.00 Total: -123.51 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.04 Total: -19.94 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -71.69 1.95 -69.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990254377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.600 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds