Wall clock time and date at job start Tue Mar 31 2020 11:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99761 * 2 1 4 4 H 1.48504 * 109.47042 * 270.00148 * 3 2 1 5 5 H 1.48503 * 109.46918 * 29.99756 * 3 2 1 6 6 H 1.48498 * 109.47145 * 150.00112 * 3 2 1 7 7 C 1.38813 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99612 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00034 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00153 * 180.02562 * 9 7 2 11 11 H 1.09001 * 108.04514 * 37.88951 * 10 9 7 12 12 C 1.51498 * 108.30392 * 280.78664 * 10 9 7 13 13 C 1.52647 * 110.89698 * 191.44954 * 12 10 9 14 14 C 1.52855 * 108.65898 * 59.79091 * 13 12 10 15 15 C 1.52902 * 109.62384 * 295.05457 * 14 13 12 16 16 H 1.09000 * 111.42258 * 290.30459 * 15 14 13 17 17 C 1.55255 * 107.58046 * 166.76798 * 15 14 13 18 18 N 1.47060 * 105.75920 * 274.51043 * 17 15 14 19 19 C 1.34780 * 125.44433 * 160.31749 * 18 17 15 20 20 O 1.21513 * 120.00147 * 185.56719 * 19 18 17 21 21 C 1.48147 * 119.99736 * 5.56723 * 19 18 17 22 22 C 1.39820 * 120.92200 * 203.90947 * 21 19 18 23 23 C 1.38145 * 119.00076 * 179.97438 * 22 21 19 24 24 N 1.31814 * 120.89831 * 0.26271 * 23 22 21 25 25 C 1.31818 * 122.04474 * 359.47154 * 24 23 22 26 26 C 1.38143 * 120.89550 * 0.52142 * 25 24 23 27 27 C 1.47136 * 109.11523 * 340.05464 * 18 17 15 28 28 C 1.49678 * 108.30600 * 154.99798 * 10 9 7 29 29 H 1.08992 * 107.66946 * 280.49062 * 28 10 9 30 30 H 0.97001 * 120.00330 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99816 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.18945 * 311.81290 * 12 10 9 33 33 H 1.08997 * 109.19116 * 71.12554 * 12 10 9 34 34 H 1.09003 * 109.60490 * 179.54563 * 13 12 10 35 35 H 1.08998 * 109.60180 * 300.03593 * 13 12 10 36 36 H 1.08998 * 109.44552 * 55.09871 * 14 13 12 37 37 H 1.09002 * 109.44603 * 175.03654 * 14 13 12 38 38 H 1.09003 * 110.30984 * 155.39498 * 17 15 14 39 39 H 1.08997 * 110.12474 * 33.53182 * 17 15 14 40 40 H 1.08004 * 120.49731 * 359.96222 * 22 21 19 41 41 H 1.07997 * 119.54992 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.55001 * 180.27517 * 25 24 23 43 43 H 1.08008 * 120.49583 * 179.72570 * 26 25 24 44 44 H 1.09004 * 109.98093 * 119.09284 * 27 18 17 45 45 H 1.08994 * 109.98224 * 240.37771 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4707 0.0000 11 1 3.5726 -3.1722 -0.6361 12 6 4.1176 -3.0170 1.4130 13 6 5.0949 -4.1824 1.5425 14 6 6.4964 -3.6874 1.1858 15 6 6.5363 -3.2757 -0.2863 16 1 6.4588 -4.1414 -0.9440 17 6 7.8480 -2.4771 -0.5144 18 7 7.5378 -1.0867 -0.1491 19 6 8.4446 -0.1398 0.1633 20 8 8.0750 0.9517 0.5489 21 6 9.8919 -0.4296 0.0365 22 6 10.8355 0.2838 0.7819 23 6 12.1749 -0.0196 0.6330 24 7 12.5668 -0.9624 -0.2007 25 6 11.7102 -1.6618 -0.9182 26 6 10.3521 -1.4244 -0.8314 27 6 6.0797 -0.8929 -0.1854 28 6 5.4624 -2.2339 -0.6012 29 1 5.3435 -2.2153 -1.6844 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3620 -0.0011 32 1 4.4110 -2.2251 2.1022 33 1 3.1152 -3.3607 1.6681 34 1 5.0879 -4.5535 2.5674 35 1 4.8043 -4.9810 0.8599 36 1 6.7479 -2.8295 1.8094 37 1 7.2182 -4.4857 1.3586 38 1 8.1478 -2.5329 -1.5609 39 1 8.6401 -2.8661 0.1254 40 1 10.5218 1.0606 1.4636 41 1 12.9114 0.5262 1.2041 42 1 12.0755 -2.4282 -1.5857 43 1 9.6563 -1.9984 -1.4255 44 1 5.7174 -0.6063 0.8020 45 1 5.8242 -0.1235 -0.9138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992596488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:11 Heat of formation + Delta-G solvation = 26.429911 kcal Electronic energy + Delta-G solvation = -26903.164350 eV Core-core repulsion = 23306.994946 eV Total energy + Delta-G solvation = -3596.169403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.20749 -40.12132 -38.55128 -35.87822 -34.16433 -33.11655 -31.82081 -31.62332 -30.79295 -29.34917 -27.19935 -25.85728 -23.93962 -23.74736 -23.16751 -21.77633 -20.89061 -20.23180 -18.67868 -18.14188 -17.25545 -16.84978 -16.35448 -16.18533 -15.76290 -15.13140 -14.89981 -14.79088 -14.32009 -14.05971 -13.98909 -13.86001 -13.67106 -13.26477 -13.13862 -12.80215 -12.51740 -12.39405 -12.17163 -11.93773 -11.47809 -11.22633 -11.18739 -11.02386 -10.90153 -10.47048 -10.38902 -10.21815 -10.07081 -10.01172 -9.79919 -9.73547 -9.57503 -9.55357 -8.91704 -8.75512 -7.30193 -5.79043 -3.15305 0.43662 0.72243 2.61120 2.72340 3.38109 3.43082 3.47221 3.49759 4.02699 4.06246 4.26926 4.39969 4.56533 4.58360 4.59152 4.66750 4.70949 5.00073 5.14514 5.15921 5.21951 5.27325 5.37169 5.41042 5.43688 5.49447 5.56403 5.58381 5.63954 5.71253 5.75031 5.82135 5.95519 5.99316 6.12446 6.20083 6.22882 6.25524 6.34772 6.37475 6.59715 6.80647 7.02191 7.29650 7.53226 7.90633 7.96535 8.39542 9.17320 9.90214 10.08222 11.39104 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.003939 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.706068 B = 7106.579528 C = 8259.367452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.008 3.992 3 Si 0.876 3.124 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.754 5.754 10 C 0.196 3.804 11 H 0.054 0.946 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.112 4.112 15 C -0.088 4.088 16 H 0.100 0.900 17 C 0.096 3.904 18 N -0.605 5.605 19 C 0.566 3.434 20 O -0.525 6.525 21 C -0.077 4.077 22 C -0.119 4.119 23 C 0.095 3.905 24 N -0.473 5.473 25 C 0.095 3.905 26 C -0.154 4.154 27 C 0.113 3.887 28 C -0.092 4.092 29 H 0.075 0.925 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.152 0.848 44 H 0.078 0.922 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.504 -8.605 -0.846 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.188 4.188 3 Si 0.706 3.294 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.398 5.398 10 C 0.087 3.913 11 H 0.072 0.928 12 C -0.171 4.171 13 C -0.155 4.155 14 C -0.149 4.149 15 C -0.107 4.107 16 H 0.118 0.882 17 C -0.027 4.027 18 N -0.338 5.338 19 C 0.354 3.646 20 O -0.401 6.401 21 C -0.088 4.088 22 C -0.139 4.139 23 C -0.061 4.061 24 N -0.183 5.183 25 C -0.062 4.062 26 C -0.174 4.174 27 C -0.009 4.009 28 C -0.112 4.112 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.164 0.836 41 H 0.180 0.820 42 H 0.179 0.821 43 H 0.169 0.831 44 H 0.096 0.904 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 23.947 -8.158 -0.724 25.309 hybrid contribution -0.458 1.523 0.056 1.592 sum 23.489 -6.635 -0.668 24.417 Atomic orbital electron populations 1.69690 1.05077 1.25848 1.57440 1.24639 0.95165 0.97079 1.01928 0.86689 0.79473 0.85277 0.77957 1.21013 1.21583 1.20153 1.19045 0.80523 0.94661 1.43145 0.89089 1.43050 1.04182 1.01853 1.90700 1.19039 0.88621 0.89435 0.94222 0.92765 1.21836 0.99069 0.96742 0.99428 1.21430 0.94637 0.98639 1.00765 1.21546 0.97817 1.00655 0.94896 1.22047 0.92757 0.97641 0.98282 0.88220 1.22784 0.98697 0.81375 0.99847 1.48286 1.07444 1.10755 1.67299 1.17886 0.84741 0.83835 0.78126 1.90829 1.80671 1.23048 1.45599 1.20354 0.93758 0.96798 0.97926 1.22332 0.93517 0.99158 0.98942 1.22799 0.94036 0.94135 0.95153 1.67560 1.39823 1.05641 1.05242 1.22788 0.89091 0.97632 0.96693 1.22915 0.98208 0.97431 0.98877 1.21958 0.77486 0.98447 1.02962 1.21161 0.95354 0.92829 1.01819 0.90644 0.93031 0.80480 0.92564 0.91528 0.92433 0.92054 0.91971 0.92210 0.90979 0.90196 0.83606 0.81996 0.82098 0.83095 0.90354 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.49 27.73 -169.99 -4.71 17.78 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 7 C -0.24 -6.69 10.28 -15.06 -0.15 -6.84 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 N -0.75 -17.08 4.71 -55.79 -0.26 -17.34 16 10 C 0.20 3.43 2.51 -70.33 -0.18 3.25 16 11 H 0.05 0.99 8.06 -51.93 -0.42 0.57 16 12 C -0.13 -2.13 5.30 -27.67 -0.15 -2.28 16 13 C -0.12 -1.41 5.94 -26.99 -0.16 -1.57 16 14 C -0.11 -1.18 4.90 -26.86 -0.13 -1.31 16 15 C -0.09 -0.89 3.39 -89.53 -0.30 -1.19 16 16 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 17 C 0.10 0.88 4.38 -2.54 -0.01 0.86 16 18 N -0.60 -7.96 3.30 -172.09 -0.57 -8.53 16 19 C 0.57 8.25 7.68 -12.19 -0.09 8.16 16 20 O -0.53 -9.80 17.01 5.35 0.09 -9.71 16 21 C -0.08 -0.87 5.71 -104.65 -0.60 -1.47 16 22 C -0.12 -1.22 9.69 -39.02 -0.38 -1.60 16 23 C 0.10 0.85 11.17 -17.59 -0.20 0.65 16 24 N -0.47 -4.61 10.34 -13.31 -0.14 -4.74 16 25 C 0.09 0.77 11.17 -17.59 -0.20 0.57 16 26 C -0.15 -1.33 8.27 -39.03 -0.32 -1.65 16 27 C 0.11 1.79 4.83 -3.50 -0.02 1.77 16 28 C -0.09 -1.28 2.34 -92.12 -0.22 -1.50 16 29 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 30 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 31 H 0.36 8.26 3.56 -40.82 -0.15 8.11 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.77 7.93 -51.93 -0.41 0.36 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.51 6.54 -51.93 -0.34 0.17 16 39 H 0.08 0.63 6.83 -51.93 -0.35 0.27 16 40 H 0.15 1.45 7.91 -52.48 -0.42 1.03 16 41 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.15 1.00 4.55 -52.48 -0.24 0.77 16 44 H 0.08 1.43 7.44 -51.93 -0.39 1.05 16 45 H 0.07 1.24 8.01 -51.93 -0.42 0.83 16 LS Contribution 351.16 15.07 5.29 5.29 Total: -1.00 -34.18 351.16 -9.25 -43.43 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.52 Total: 6.22 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.20 Total: -4.01 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.19 Total: -59.00 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.18 -9.25 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992596488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.857 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds