Wall clock time and date at job start Tue Mar 31 2020 11:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99761 * 2 1 4 4 H 1.48504 * 109.47042 * 270.00148 * 3 2 1 5 5 H 1.48503 * 109.46918 * 29.99756 * 3 2 1 6 6 H 1.48498 * 109.47145 * 150.00112 * 3 2 1 7 7 C 1.38813 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99612 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00034 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00153 * 180.02562 * 9 7 2 11 11 H 1.09001 * 108.04514 * 37.88951 * 10 9 7 12 12 C 1.51498 * 108.30392 * 280.78664 * 10 9 7 13 13 C 1.52647 * 110.89698 * 191.44954 * 12 10 9 14 14 C 1.52855 * 108.65898 * 59.79091 * 13 12 10 15 15 C 1.52902 * 109.62384 * 295.05457 * 14 13 12 16 16 H 1.09000 * 111.42258 * 290.30459 * 15 14 13 17 17 C 1.55255 * 107.58046 * 166.76798 * 15 14 13 18 18 N 1.47060 * 105.75920 * 274.51043 * 17 15 14 19 19 C 1.34780 * 125.44433 * 160.31749 * 18 17 15 20 20 O 1.21513 * 120.00147 * 185.56719 * 19 18 17 21 21 C 1.48147 * 119.99736 * 5.56723 * 19 18 17 22 22 C 1.39820 * 120.92200 * 203.90947 * 21 19 18 23 23 C 1.38145 * 119.00076 * 179.97438 * 22 21 19 24 24 N 1.31814 * 120.89831 * 0.26271 * 23 22 21 25 25 C 1.31818 * 122.04474 * 359.47154 * 24 23 22 26 26 C 1.38143 * 120.89550 * 0.52142 * 25 24 23 27 27 C 1.47136 * 109.11523 * 340.05464 * 18 17 15 28 28 C 1.49678 * 108.30600 * 154.99798 * 10 9 7 29 29 H 1.08992 * 107.66946 * 280.49062 * 28 10 9 30 30 H 0.97001 * 120.00330 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99816 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.18945 * 311.81290 * 12 10 9 33 33 H 1.08997 * 109.19116 * 71.12554 * 12 10 9 34 34 H 1.09003 * 109.60490 * 179.54563 * 13 12 10 35 35 H 1.08998 * 109.60180 * 300.03593 * 13 12 10 36 36 H 1.08998 * 109.44552 * 55.09871 * 14 13 12 37 37 H 1.09002 * 109.44603 * 175.03654 * 14 13 12 38 38 H 1.09003 * 110.30984 * 155.39498 * 17 15 14 39 39 H 1.08997 * 110.12474 * 33.53182 * 17 15 14 40 40 H 1.08004 * 120.49731 * 359.96222 * 22 21 19 41 41 H 1.07997 * 119.54992 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.55001 * 180.27517 * 25 24 23 43 43 H 1.08008 * 120.49583 * 179.72570 * 26 25 24 44 44 H 1.09004 * 109.98093 * 119.09284 * 27 18 17 45 45 H 1.08994 * 109.98224 * 240.37771 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4707 0.0000 11 1 3.5726 -3.1722 -0.6361 12 6 4.1176 -3.0170 1.4130 13 6 5.0949 -4.1824 1.5425 14 6 6.4964 -3.6874 1.1858 15 6 6.5363 -3.2757 -0.2863 16 1 6.4588 -4.1414 -0.9440 17 6 7.8480 -2.4771 -0.5144 18 7 7.5378 -1.0867 -0.1491 19 6 8.4446 -0.1398 0.1633 20 8 8.0750 0.9517 0.5489 21 6 9.8919 -0.4296 0.0365 22 6 10.8355 0.2838 0.7819 23 6 12.1749 -0.0196 0.6330 24 7 12.5668 -0.9624 -0.2007 25 6 11.7102 -1.6618 -0.9182 26 6 10.3521 -1.4244 -0.8314 27 6 6.0797 -0.8929 -0.1854 28 6 5.4624 -2.2339 -0.6012 29 1 5.3435 -2.2153 -1.6844 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3620 -0.0011 32 1 4.4110 -2.2251 2.1022 33 1 3.1152 -3.3607 1.6681 34 1 5.0879 -4.5535 2.5674 35 1 4.8043 -4.9810 0.8599 36 1 6.7479 -2.8295 1.8094 37 1 7.2182 -4.4857 1.3586 38 1 8.1478 -2.5329 -1.5609 39 1 8.6401 -2.8661 0.1254 40 1 10.5218 1.0606 1.4636 41 1 12.9114 0.5262 1.2041 42 1 12.0755 -2.4282 -1.5857 43 1 9.6563 -1.9984 -1.4255 44 1 5.7174 -0.6063 0.8020 45 1 5.8242 -0.1235 -0.9138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992596488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:10 Heat of formation + Delta-G solvation = 3.094056 kcal Electronic energy + Delta-G solvation = -26904.176268 eV Core-core repulsion = 23306.994946 eV Total energy + Delta-G solvation = -3597.181322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.17227 -40.99016 -39.66090 -37.25411 -35.63214 -33.98438 -33.62338 -32.38766 -31.80661 -30.88731 -28.38843 -26.84466 -25.43881 -24.46865 -24.42642 -22.86216 -22.12061 -21.22596 -20.15812 -19.52511 -18.50109 -17.71171 -17.41923 -17.02422 -16.75462 -16.61489 -16.29106 -15.73767 -15.67050 -15.14991 -14.89512 -14.86768 -14.72090 -14.57327 -14.42390 -14.20210 -13.80652 -13.76599 -13.34811 -13.01902 -12.78998 -12.76423 -12.44703 -12.42357 -12.13305 -12.10751 -11.86463 -11.53000 -11.35782 -11.28537 -11.04955 -10.98857 -10.80961 -10.50422 -10.19222 -9.82427 -9.32921 -8.07112 -5.38161 -0.35277 0.08556 1.28737 1.31893 1.36118 1.60332 1.71386 2.40364 2.79684 3.13177 3.24543 3.32812 3.39990 3.53127 3.66624 3.81019 3.89646 3.94931 4.02399 4.11066 4.19643 4.22442 4.34677 4.38228 4.51114 4.53712 4.58391 4.68225 4.73481 4.78014 4.80086 4.84086 4.89628 4.96849 5.02490 5.13915 5.18364 5.24521 5.32994 5.39664 5.53883 5.60127 5.66224 5.77717 6.18057 6.29149 6.83583 6.89208 7.04201 7.81608 7.96846 9.14749 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.003939 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.706068 B = 7106.579528 C = 8259.367452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.057 4.057 3 Si 0.935 3.065 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.219 4.219 8 H 0.066 0.934 9 N -0.760 5.760 10 C 0.192 3.808 11 H 0.052 0.948 12 C -0.126 4.126 13 C -0.108 4.108 14 C -0.109 4.109 15 C -0.077 4.077 16 H 0.140 0.860 17 C 0.091 3.909 18 N -0.601 5.601 19 C 0.560 3.440 20 O -0.583 6.583 21 C -0.095 4.095 22 C -0.133 4.133 23 C 0.098 3.902 24 N -0.489 5.489 25 C 0.100 3.900 26 C -0.142 4.142 27 C 0.116 3.884 28 C -0.087 4.087 29 H 0.086 0.914 30 H 0.257 0.743 31 H 0.360 0.640 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.186 0.814 42 H 0.198 0.802 43 H 0.176 0.824 44 H 0.042 0.958 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.529 -11.341 -2.239 29.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.248 4.248 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.350 4.350 8 H 0.084 0.916 9 N -0.404 5.404 10 C 0.085 3.915 11 H 0.070 0.930 12 C -0.166 4.166 13 C -0.146 4.146 14 C -0.146 4.146 15 C -0.096 4.096 16 H 0.158 0.842 17 C -0.029 4.029 18 N -0.332 5.332 19 C 0.350 3.650 20 O -0.464 6.464 21 C -0.106 4.106 22 C -0.154 4.154 23 C -0.058 4.058 24 N -0.199 5.199 25 C -0.056 4.056 26 C -0.162 4.162 27 C -0.007 4.007 28 C -0.107 4.107 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.194 0.806 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.155 0.845 41 H 0.203 0.797 42 H 0.215 0.785 43 H 0.193 0.807 44 H 0.060 0.940 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 28.040 -10.965 -2.123 30.182 hybrid contribution -1.699 2.261 0.515 2.875 sum 26.340 -8.704 -1.608 27.788 Atomic orbital electron populations 1.69833 1.06660 1.26344 1.60332 1.25277 0.95854 1.00234 1.03457 0.85719 0.78255 0.81493 0.78109 1.20310 1.22088 1.19580 1.19068 0.82601 0.93412 1.39887 0.91562 1.43197 1.02693 1.04061 1.90480 1.19316 0.90278 0.86946 0.94966 0.93043 1.21702 0.99063 0.97995 0.97838 1.21379 0.94320 0.96862 1.02042 1.21558 0.97318 1.00925 0.94820 1.22164 0.91056 0.97665 0.98701 0.84244 1.23162 0.98785 0.78459 1.02514 1.48332 1.05925 1.12442 1.66518 1.18507 0.86270 0.83188 0.77030 1.90788 1.81789 1.25476 1.48328 1.20205 0.91507 0.98850 1.00029 1.22391 0.94269 0.99372 0.99336 1.23115 0.93695 0.93982 0.95010 1.67651 1.40528 1.06019 1.05664 1.23399 0.88587 0.97520 0.96136 1.23124 0.98999 0.96277 0.97773 1.21702 0.79734 0.99023 1.00267 1.21040 0.94318 0.93488 1.01829 0.89600 0.93403 0.80603 0.94985 0.94325 0.91579 0.90080 0.94341 0.88396 0.87390 0.87753 0.84511 0.79707 0.78493 0.80655 0.93952 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.64 13.97 21.65 0.30 -63.33 16 2 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 3 Si 0.94 48.32 27.73 68.60 1.90 50.22 16 4 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 5 H -0.29 -15.33 7.11 99.48 0.71 -14.63 16 6 H -0.27 -13.50 6.52 99.48 0.65 -12.85 16 7 C -0.22 -12.40 10.28 84.03 0.86 -11.54 16 8 H 0.07 4.04 8.06 -2.92 -0.02 4.02 16 9 N -0.76 -35.38 4.71 -330.41 -1.56 -36.94 16 10 C 0.19 6.70 2.51 43.44 0.11 6.81 16 11 H 0.05 1.84 8.06 -2.39 -0.02 1.82 16 12 C -0.13 -4.16 5.30 29.98 0.16 -4.00 16 13 C -0.11 -2.33 5.94 30.43 0.18 -2.14 16 14 C -0.11 -1.87 4.90 30.51 0.15 -1.72 16 15 C -0.08 -1.19 3.39 -10.09 -0.03 -1.23 16 16 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 17 C 0.09 1.23 4.38 87.05 0.38 1.61 16 18 N -0.60 -14.90 3.30 -816.66 -2.70 -17.59 16 19 C 0.56 16.17 7.68 86.88 0.67 16.84 16 20 O -0.58 -22.82 17.01 -3.76 -0.06 -22.88 16 21 C -0.09 -1.98 5.71 -19.88 -0.11 -2.09 16 22 C -0.13 -2.62 9.69 22.63 0.22 -2.40 16 23 C 0.10 1.53 11.17 84.67 0.95 2.47 16 24 N -0.49 -7.85 10.34 -196.01 -2.03 -9.87 16 25 C 0.10 1.16 11.17 84.67 0.95 2.10 16 26 C -0.14 -1.84 8.27 22.63 0.19 -1.66 16 27 C 0.12 3.67 4.83 86.38 0.42 4.09 16 28 C -0.09 -2.27 2.34 -11.77 -0.03 -2.30 16 29 H 0.09 2.10 8.13 -2.39 -0.02 2.09 16 30 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 31 H 0.36 16.95 3.56 -92.71 -0.33 16.62 16 32 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.04 0.86 7.93 -2.39 -0.02 0.84 16 37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 0.79 6.54 -2.39 -0.02 0.78 16 39 H 0.10 1.01 6.83 -2.39 -0.02 0.99 16 40 H 0.14 2.84 7.91 -2.91 -0.02 2.81 16 41 H 0.19 1.82 8.06 -2.91 -0.02 1.79 16 42 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 43 H 0.18 1.29 4.55 -2.91 -0.01 1.27 16 44 H 0.04 1.63 7.44 -2.38 -0.02 1.61 16 45 H 0.05 1.78 8.01 -2.39 -0.02 1.76 16 Total: -1.00 -81.13 351.16 1.99 -79.14 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.61 Total: 19.35 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 5.52 Total: 1.91 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -5.98 Total: -127.74 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.06 Total: -22.88 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 1.90 Total: 50.22 kcal Total: -81.13 1.99 -79.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992596488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.234 kcal (2) G-P(sol) polarization free energy of solvation -81.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds