Wall clock time and date at job start Tue Mar 31 2020 11:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86791 * 120.00221 * 2 1 4 4 H 1.48506 * 109.46889 * 269.99746 * 3 2 1 5 5 H 1.48497 * 109.47430 * 29.99225 * 3 2 1 6 6 H 1.48501 * 109.47620 * 149.99951 * 3 2 1 7 7 C 1.38822 * 119.99618 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99468 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00279 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.92344 * 33.83694 * 10 9 7 12 12 C 1.53804 * 110.01537 * 272.62740 * 10 9 7 13 13 C 1.52531 * 111.70595 * 183.03928 * 12 10 9 14 14 C 1.53835 * 111.65510 * 54.04857 * 13 12 10 15 15 C 1.50672 * 108.00003 * 303.34481 * 14 13 12 16 16 H 1.08999 * 108.95191 * 304.53912 * 15 14 13 17 17 C 1.52330 * 118.51896 * 177.97502 * 15 14 13 18 18 N 1.48238 * 105.92565 * 213.82351 * 17 15 14 19 19 C 1.34781 * 125.78641 * 183.14941 * 18 17 15 20 20 O 1.21507 * 120.00210 * 180.02562 * 19 18 17 21 21 C 1.48169 * 119.99392 * 0.02744 * 19 18 17 22 22 C 1.39314 * 119.71976 * 179.97438 * 21 19 18 23 23 C 1.38590 * 119.06005 * 179.97438 * 22 21 19 24 24 C 1.38633 * 118.48540 * 359.97438 * 23 22 21 25 25 C 1.38554 * 119.35186 * 0.02562 * 24 23 22 26 26 N 1.31521 * 120.90764 * 359.74106 * 25 24 23 27 27 C 1.48660 * 108.43385 * 3.15175 * 18 17 15 28 28 C 1.51616 * 109.94371 * 154.99700 * 10 9 7 29 29 H 1.08999 * 110.50631 * 63.11793 * 28 10 9 30 30 H 0.96998 * 120.00284 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00041 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.03413 * 303.61304 * 12 10 9 33 33 H 1.09004 * 109.03649 * 62.46724 * 12 10 9 34 34 H 1.08999 * 109.04067 * 174.60821 * 13 12 10 35 35 H 1.09003 * 109.04017 * 293.48714 * 13 12 10 36 36 H 1.09006 * 109.94265 * 62.17797 * 14 13 12 37 37 H 1.08997 * 109.94070 * 183.33521 * 14 13 12 38 38 H 1.09002 * 110.17399 * 94.68839 * 17 15 14 39 39 H 1.09002 * 110.17234 * 332.96239 * 17 15 14 40 40 H 1.08002 * 120.46863 * 359.95794 * 22 21 19 41 41 H 1.07996 * 120.75588 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.31869 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.54833 * 179.97438 * 25 24 23 44 44 H 1.09008 * 110.62832 * 142.86181 * 27 18 17 45 45 H 1.09001 * 110.62738 * 265.72825 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0462 -1.4001 5 1 1.4476 2.6527 0.6998 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9808 -3.5530 0.5712 12 6 2.3784 -4.0797 -1.4431 13 6 3.0765 -5.4350 -1.4922 14 6 2.2730 -6.5147 -0.7471 15 6 2.0620 -6.0442 0.6686 16 1 3.0307 -5.8206 1.1154 17 6 1.2460 -6.9189 1.6117 18 7 0.5222 -5.9859 2.5078 19 6 -0.2726 -6.3391 3.5374 20 8 -0.8174 -5.4831 4.2059 21 6 -0.4820 -7.7714 3.8541 22 6 -1.3043 -8.1300 4.9199 23 6 -1.4910 -9.4737 5.2036 24 6 -0.8489 -10.4123 4.4107 25 6 -0.0453 -9.9836 3.3666 26 7 0.1109 -8.7019 3.1165 27 6 0.8214 -4.5945 2.0784 28 6 1.1978 -4.7505 0.6029 29 1 0.3073 -4.9139 -0.0041 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 1.4499 -4.1373 -2.0111 33 1 3.0258 -3.3298 -1.8978 34 1 3.1965 -5.7357 -2.5330 35 1 4.0613 -5.3446 -1.0336 36 1 1.3025 -6.6515 -1.2243 37 1 2.8237 -7.4553 -0.7488 38 1 1.9063 -7.5624 2.1933 39 1 0.5368 -7.5225 1.0454 40 1 -1.7892 -7.3717 5.5168 41 1 -2.1229 -9.7825 6.0231 42 1 -0.9739 -11.4672 4.6051 43 1 0.4568 -10.7121 2.7471 44 1 -0.0598 -3.9617 2.1850 45 1 1.6561 -4.1875 2.6491 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992600989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:31 Heat of formation + Delta-G solvation = -2.477960 kcal Electronic energy + Delta-G solvation = -26441.474022 eV Core-core repulsion = 22844.051080 eV Total energy + Delta-G solvation = -3597.422943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.89460 -40.87763 -39.49743 -36.99768 -35.61596 -33.67871 -33.28581 -32.56102 -31.44027 -30.51262 -28.07400 -26.69442 -25.54326 -24.50053 -24.19860 -22.19635 -21.61054 -21.03663 -20.93380 -19.19503 -18.46693 -17.87674 -17.07926 -16.79332 -16.67016 -16.46433 -15.78804 -15.70734 -15.55924 -15.36117 -15.03601 -14.74137 -14.56079 -14.27338 -14.02567 -13.80785 -13.58731 -13.42394 -13.30468 -12.90299 -12.81988 -12.79591 -12.53910 -12.20961 -11.97808 -11.89901 -11.71942 -11.46530 -11.44088 -11.25929 -10.92652 -10.88021 -10.83060 -10.38718 -10.24024 -9.71368 -8.98963 -7.92816 -5.21009 -0.35724 0.29026 1.45590 1.47515 1.55644 1.66906 1.77343 2.56091 2.88013 3.01331 3.33073 3.40052 3.65877 3.72453 3.82024 3.99130 4.07319 4.08343 4.11860 4.24052 4.25717 4.44082 4.48955 4.52570 4.57019 4.61686 4.68148 4.73419 4.79733 4.82092 4.91197 4.95762 5.03797 5.11878 5.18689 5.20324 5.28541 5.36619 5.40768 5.43195 5.51045 5.53586 5.67712 5.71018 6.28789 6.39071 6.70743 7.01566 7.34469 8.11105 8.33638 9.30846 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.003369 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.168050 B = 8307.926581 C = 9613.134626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.233 4.233 8 H 0.077 0.923 9 N -0.736 5.736 10 C 0.192 3.808 11 H 0.047 0.953 12 C -0.129 4.129 13 C -0.106 4.106 14 C -0.090 4.090 15 C -0.097 4.097 16 H 0.083 0.917 17 C 0.143 3.857 18 N -0.603 5.603 19 C 0.566 3.434 20 O -0.586 6.586 21 C 0.056 3.944 22 C -0.127 4.127 23 C -0.079 4.079 24 C -0.133 4.133 25 C 0.090 3.910 26 N -0.467 5.467 27 C 0.126 3.874 28 C -0.097 4.097 29 H 0.069 0.931 30 H 0.249 0.751 31 H 0.370 0.630 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.173 0.827 42 H 0.182 0.818 43 H 0.199 0.801 44 H 0.044 0.956 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 -29.124 5.042 29.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.227 1.227 6 H -0.194 1.194 7 C -0.365 4.365 8 H 0.095 0.905 9 N -0.375 5.375 10 C 0.083 3.917 11 H 0.065 0.935 12 C -0.169 4.169 13 C -0.144 4.144 14 C -0.128 4.128 15 C -0.116 4.116 16 H 0.101 0.899 17 C 0.022 3.978 18 N -0.334 5.334 19 C 0.355 3.645 20 O -0.467 6.467 21 C -0.080 4.080 22 C -0.148 4.148 23 C -0.105 4.105 24 C -0.152 4.152 25 C -0.070 4.070 26 N -0.179 5.179 27 C 0.004 3.996 28 C -0.117 4.117 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.201 0.799 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.152 0.848 41 H 0.190 0.810 42 H 0.200 0.800 43 H 0.215 0.785 44 H 0.063 0.937 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.237 -28.254 4.766 28.836 hybrid contribution -0.959 1.800 0.746 2.172 sum 2.278 -26.454 5.512 27.118 Atomic orbital electron populations 1.69829 1.06678 1.25815 1.59950 1.25541 0.96286 1.01051 1.04193 0.85186 0.77725 0.79784 0.77384 1.21362 1.22664 1.19361 1.19611 0.91373 0.85185 1.40326 0.90532 1.42630 1.05293 1.01069 1.88500 1.20164 0.93463 0.83687 0.94386 0.93458 1.22131 0.99731 0.97217 0.97822 1.21476 0.98900 0.92881 1.01156 1.21086 1.00994 0.98892 0.91804 1.21825 0.98536 0.93829 0.97447 0.89860 1.21804 0.94955 0.90432 0.90648 1.49144 1.45707 1.08654 1.29938 1.18279 0.78334 0.88357 0.79528 1.90759 1.51437 1.52452 1.52013 1.20702 0.99271 0.91844 0.96205 1.22220 0.97034 0.99089 0.96461 1.22025 0.97854 0.90810 0.99769 1.22887 0.94975 1.03006 0.94332 1.23586 0.95767 0.91343 0.96285 1.67746 1.20247 1.02995 1.26940 1.21787 0.99637 0.82456 0.95764 1.22178 0.99093 0.97235 0.93164 0.91236 0.94261 0.79904 0.94044 0.93993 0.90581 0.91497 0.91876 0.88384 0.88950 0.90050 0.84839 0.80964 0.80017 0.78475 0.93696 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.81 13.06 21.65 0.28 -61.53 16 2 C -0.08 -4.66 5.50 84.87 0.47 -4.20 16 3 Si 0.97 47.65 29.55 68.60 2.03 49.68 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.23 -13.17 9.95 84.04 0.84 -12.33 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -37.94 5.08 -323.81 -1.65 -39.58 16 10 C 0.19 7.52 2.54 44.81 0.11 7.63 16 11 H 0.05 1.89 7.99 -2.39 -0.02 1.87 16 12 C -0.13 -4.35 5.47 30.71 0.17 -4.18 16 13 C -0.11 -2.44 5.86 30.72 0.18 -2.26 16 14 C -0.09 -1.77 5.70 30.12 0.17 -1.59 16 15 C -0.10 -2.36 2.28 -10.83 -0.02 -2.38 16 16 H 0.08 1.99 8.00 -2.39 -0.02 1.97 16 17 C 0.14 3.47 5.12 85.82 0.44 3.91 16 18 N -0.60 -20.03 3.38 -815.90 -2.76 -22.79 16 19 C 0.57 20.12 7.85 86.88 0.68 20.81 16 20 O -0.59 -25.54 16.62 -3.74 -0.06 -25.60 16 21 C 0.06 1.49 6.72 41.91 0.28 1.78 16 22 C -0.13 -2.75 9.63 22.61 0.22 -2.54 16 23 C -0.08 -0.96 10.17 22.45 0.23 -0.73 16 24 C -0.13 -1.09 10.11 22.44 0.23 -0.86 16 25 C 0.09 1.06 11.18 84.81 0.95 2.01 16 26 N -0.47 -9.64 6.90 -184.91 -1.28 -10.92 16 27 C 0.13 4.83 6.49 85.98 0.56 5.38 16 28 C -0.10 -3.28 1.95 -10.29 -0.02 -3.30 16 29 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 30 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.37 20.94 7.81 -92.71 -0.72 20.21 16 32 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.06 1.28 8.06 -2.38 -0.02 1.26 16 37 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 2.00 7.34 -2.39 -0.02 1.98 16 39 H 0.08 1.86 7.65 -2.39 -0.02 1.84 16 40 H 0.13 3.15 7.64 -2.91 -0.02 3.13 16 41 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16 43 H 0.20 0.80 8.06 -2.91 -0.02 0.78 16 44 H 0.04 2.05 8.07 -2.38 -0.02 2.03 16 45 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -78.12 362.24 2.30 -75.82 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.26 Total: 27.78 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.47 Total: 7.14 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -5.40 Total: -134.82 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.06 Total: -25.60 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -78.12 2.30 -75.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992600989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.341 kcal (2) G-P(sol) polarization free energy of solvation -78.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds