Wall clock time and date at job start Tue Mar 31 2020 11:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99662 * 2 1 4 4 H 1.48500 * 109.47171 * 269.99605 * 3 2 1 5 5 H 1.48491 * 109.47494 * 29.99986 * 3 2 1 6 6 H 1.48499 * 109.46746 * 149.99851 * 3 2 1 7 7 C 1.38808 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00091 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99591 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99894 * 179.97438 * 9 7 2 11 11 C 1.53035 * 109.46096 * 154.99742 * 10 9 7 12 12 C 1.53192 * 109.31545 * 181.38538 * 11 10 9 13 13 N 1.46926 * 108.77328 * 305.36714 * 12 11 10 14 14 C 1.34779 * 120.62626 * 233.58147 * 13 12 11 15 15 O 1.21279 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99682 * 179.97438 * 14 13 12 17 17 H 1.09000 * 115.55976 * 34.31251 * 16 14 13 18 18 C 1.53071 * 117.49613 * 248.60597 * 16 14 13 19 19 C 1.52999 * 117.49631 * 180.02562 * 16 14 13 20 20 H 1.08990 * 117.49926 * 359.97438 * 19 16 14 21 21 C 1.50706 * 117.49717 * 214.97946 * 19 16 14 22 22 C 1.38650 * 120.79111 * 120.08654 * 21 19 16 23 23 C 1.38193 * 119.16589 * 180.02562 * 22 21 19 24 24 N 1.31874 * 120.76375 * 0.02562 * 23 22 21 25 25 C 1.31868 * 121.72350 * 359.97438 * 24 23 22 26 26 C 1.38198 * 120.76515 * 0.02562 * 25 24 23 27 27 C 1.46921 * 118.74097 * 53.86031 * 13 12 11 28 28 C 1.53043 * 109.46005 * 275.06545 * 10 9 7 29 29 H 0.96998 * 119.99909 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00398 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46049 * 35.02224 * 10 9 7 32 32 H 1.09003 * 109.49817 * 61.43423 * 11 10 9 33 33 H 1.09002 * 109.52480 * 301.35207 * 11 10 9 34 34 H 1.08996 * 109.59055 * 185.57726 * 12 11 10 35 35 H 1.09004 * 109.70466 * 65.21964 * 12 11 10 36 36 H 1.09001 * 117.51774 * 145.04084 * 18 16 14 37 37 H 1.09003 * 117.49043 * 359.97438 * 18 16 14 38 38 H 1.08005 * 120.41274 * 0.02562 * 22 21 19 39 39 H 1.07994 * 119.62195 * 180.02562 * 23 22 21 40 40 H 1.07999 * 119.61410 * 179.97438 * 25 24 23 41 41 H 1.08005 * 120.41663 * 179.97438 * 26 25 24 42 42 H 1.08992 * 109.59042 * 65.92257 * 27 13 12 43 43 H 1.09003 * 109.59017 * 186.35348 * 27 13 12 44 44 H 1.09001 * 109.49617 * 298.56649 * 28 10 9 45 45 H 1.09005 * 109.49412 * 58.63007 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 5.4998 -2.2590 -0.6073 12 6 6.2498 -3.5944 -0.6362 13 7 6.2663 -4.1569 0.7210 14 6 7.4283 -4.5181 1.3005 15 8 8.4736 -4.3796 0.7013 16 6 7.4288 -5.0932 2.6935 17 1 6.5670 -5.7102 2.9479 18 6 8.0442 -4.2438 3.8085 19 6 8.7799 -5.4832 3.2963 20 1 9.6683 -5.3243 2.6852 21 6 8.8176 -6.6915 4.1962 22 6 9.6121 -7.7841 3.8844 23 6 9.6207 -8.8747 4.7331 24 7 8.8848 -8.8836 5.8274 25 6 8.1176 -7.8625 6.1553 26 6 8.0578 -6.7374 5.3550 27 6 4.9915 -4.3240 1.4321 28 6 4.2562 -2.9752 1.4400 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 0.0007 31 1 3.5651 -3.2065 -0.5873 32 1 6.0566 -1.5420 -0.0038 33 1 5.3971 -1.8774 -1.6231 34 1 7.2724 -3.4319 -0.9768 35 1 5.7450 -4.2849 -1.3118 36 1 7.5873 -4.3021 4.7964 37 1 8.4488 -3.2697 3.5338 38 1 10.2167 -7.7829 2.9894 39 1 10.2372 -9.7295 4.4976 40 1 7.5284 -7.9063 7.0594 41 1 7.4271 -5.9045 5.6287 42 1 4.3839 -5.0715 0.9222 43 1 5.1835 -4.6430 2.4566 44 1 4.8246 -2.2514 2.0241 45 1 3.2677 -3.1030 1.8813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996602292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:16 Heat of formation + Delta-G solvation = 41.540557 kcal Electronic energy + Delta-G solvation = -25542.747323 eV Core-core repulsion = 21947.233167 eV Total energy + Delta-G solvation = -3595.514157 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.91659 -40.10225 -38.01595 -36.73398 -34.68758 -32.45624 -32.03581 -31.52437 -30.94238 -29.85479 -25.97940 -24.90165 -24.16744 -23.56065 -22.99284 -22.02423 -21.19005 -20.26177 -18.88287 -18.07150 -17.50931 -16.82589 -16.55977 -15.95454 -15.84483 -15.21166 -14.90955 -14.48433 -14.36732 -14.18003 -14.10384 -13.92433 -13.61928 -13.48407 -13.00650 -12.63569 -12.50335 -12.34932 -12.22569 -11.99308 -11.84879 -11.42990 -11.12180 -11.05316 -10.96740 -10.90060 -10.63271 -10.30527 -9.97307 -9.88138 -9.81812 -9.64796 -9.58026 -9.50189 -8.98903 -8.63389 -7.34732 -5.83358 -3.19520 0.78649 0.81991 2.36298 2.87652 3.32846 3.34301 3.36071 3.41236 3.68598 3.99217 4.12867 4.29417 4.40915 4.45688 4.53399 4.65235 4.72121 4.80894 4.86360 5.00361 5.02735 5.13540 5.23734 5.27951 5.32512 5.42292 5.46257 5.51752 5.54750 5.56931 5.58331 5.73662 5.78737 5.86159 6.02162 6.03042 6.09708 6.21329 6.31253 6.34326 6.46385 6.72961 6.86892 7.37463 7.63176 7.91855 8.09387 8.35698 9.13663 9.86484 10.06075 11.34760 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023383 B = 0.002534 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.177488 B =11047.525503 C =11564.648570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.183 3.817 11 C -0.142 4.142 12 C 0.116 3.884 13 N -0.601 5.601 14 C 0.544 3.456 15 O -0.549 6.549 16 C -0.171 4.171 17 H 0.128 0.872 18 C -0.138 4.138 19 C -0.093 4.093 20 H 0.131 0.869 21 C -0.006 4.006 22 C -0.164 4.164 23 C 0.100 3.900 24 N -0.491 5.491 25 C 0.101 3.899 26 C -0.174 4.174 27 C 0.106 3.894 28 C -0.150 4.150 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.136 0.864 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.137 0.863 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.482 -14.449 8.950 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.073 3.927 11 C -0.181 4.181 12 C -0.006 4.006 13 N -0.333 5.333 14 C 0.332 3.668 15 O -0.428 6.428 16 C -0.192 4.192 17 H 0.146 0.854 18 C -0.175 4.175 19 C -0.111 4.111 20 H 0.149 0.851 21 C -0.014 4.014 22 C -0.184 4.184 23 C -0.057 4.057 24 N -0.200 5.200 25 C -0.055 4.055 26 C -0.193 4.193 27 C -0.017 4.017 28 C -0.191 4.191 29 H 0.070 0.930 30 H 0.194 0.806 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.155 0.845 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 18.766 -15.154 9.145 25.796 hybrid contribution 0.254 2.036 -0.513 2.115 sum 19.020 -13.118 8.631 24.665 Atomic orbital electron populations 1.69700 1.05104 1.25892 1.57330 1.24680 0.95229 0.97239 1.01931 0.86557 0.79169 0.84997 0.77812 1.21066 1.21751 1.20381 1.19055 0.80514 0.94681 1.43246 0.89170 1.42799 1.04028 1.01961 1.90220 1.20143 0.90189 0.89441 0.92889 1.22244 0.97209 0.96423 1.02247 1.21615 1.02019 0.94737 0.82249 1.48078 1.06572 1.61768 1.16861 1.19496 0.83324 0.77514 0.86442 1.90668 1.31367 1.55844 1.64890 1.22376 0.98214 1.05371 0.93239 0.85435 1.23147 1.01477 0.95643 0.97271 1.21086 0.96499 0.93272 1.00285 0.85111 1.19549 0.94271 0.93901 0.93692 1.22031 1.00714 0.94135 1.01491 1.22774 0.95732 0.97402 0.89763 1.67685 1.06435 1.28361 1.17489 1.22769 0.95259 0.88690 0.98821 1.22099 1.01181 1.00377 0.95682 1.22005 0.83853 0.99152 0.96699 1.22711 1.00491 0.94641 1.01271 0.93015 0.80642 0.92489 0.91952 0.90402 0.89288 0.91283 0.87173 0.87364 0.84562 0.82654 0.82630 0.84527 0.91198 0.90179 0.92213 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.97 55.49 0.78 -27.82 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.63 27.74 -169.99 -4.71 16.91 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 7 C -0.25 -6.60 10.41 -15.06 -0.16 -6.76 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 N -0.75 -16.76 4.92 -53.39 -0.26 -17.03 16 10 C 0.18 3.21 2.73 -67.89 -0.19 3.02 16 11 C -0.14 -2.11 5.55 -26.61 -0.15 -2.26 16 12 C 0.12 1.53 6.43 -3.71 -0.02 1.50 16 13 N -0.60 -7.65 2.97 -172.50 -0.51 -8.16 16 14 C 0.54 7.08 7.48 -10.98 -0.08 7.00 16 15 O -0.55 -8.77 15.67 5.56 0.09 -8.69 16 16 C -0.17 -1.65 4.62 -91.73 -0.42 -2.08 16 17 H 0.13 1.07 6.80 -51.93 -0.35 0.72 16 18 C -0.14 -1.13 9.59 -26.72 -0.26 -1.39 16 19 C -0.09 -0.83 5.59 -91.79 -0.51 -1.35 16 20 H 0.13 1.31 7.67 -51.93 -0.40 0.91 16 21 C -0.01 -0.05 5.64 -104.32 -0.59 -0.64 16 22 C -0.16 -1.33 9.84 -39.45 -0.39 -1.72 16 23 C 0.10 0.82 11.18 -17.55 -0.20 0.63 16 24 N -0.49 -4.79 10.36 -13.26 -0.14 -4.92 16 25 C 0.10 0.82 11.18 -17.55 -0.20 0.63 16 26 C -0.17 -1.32 9.38 -39.44 -0.37 -1.69 16 27 C 0.11 1.24 6.33 -3.49 -0.02 1.22 16 28 C -0.15 -2.28 5.67 -26.38 -0.15 -2.43 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.36 8.08 5.66 -40.82 -0.23 7.85 16 31 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.21 7.00 -51.93 -0.36 0.84 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.11 0.68 6.26 -51.93 -0.33 0.36 16 37 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.14 0.78 6.17 -52.48 -0.32 0.45 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.76 5.66 -51.93 -0.29 0.47 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -33.25 364.33 -9.60 -42.85 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.53 Total: 7.62 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -3.80 Total: -6.26 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.14 Total: -57.93 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.25 -9.60 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996602292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.387 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds