Wall clock time and date at job start Tue Mar 31 2020 11:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99662 * 2 1 4 4 H 1.48500 * 109.47171 * 269.99605 * 3 2 1 5 5 H 1.48491 * 109.47494 * 29.99986 * 3 2 1 6 6 H 1.48499 * 109.46746 * 149.99851 * 3 2 1 7 7 C 1.38808 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00091 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99591 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99894 * 179.97438 * 9 7 2 11 11 C 1.53035 * 109.46096 * 154.99742 * 10 9 7 12 12 C 1.53192 * 109.31545 * 181.38538 * 11 10 9 13 13 N 1.46926 * 108.77328 * 305.36714 * 12 11 10 14 14 C 1.34779 * 120.62626 * 233.58147 * 13 12 11 15 15 O 1.21279 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.99682 * 179.97438 * 14 13 12 17 17 H 1.09000 * 115.55976 * 34.31251 * 16 14 13 18 18 C 1.53071 * 117.49613 * 248.60597 * 16 14 13 19 19 C 1.52999 * 117.49631 * 180.02562 * 16 14 13 20 20 H 1.08990 * 117.49926 * 359.97438 * 19 16 14 21 21 C 1.50706 * 117.49717 * 214.97946 * 19 16 14 22 22 C 1.38650 * 120.79111 * 120.08654 * 21 19 16 23 23 C 1.38193 * 119.16589 * 180.02562 * 22 21 19 24 24 N 1.31874 * 120.76375 * 0.02562 * 23 22 21 25 25 C 1.31868 * 121.72350 * 359.97438 * 24 23 22 26 26 C 1.38198 * 120.76515 * 0.02562 * 25 24 23 27 27 C 1.46921 * 118.74097 * 53.86031 * 13 12 11 28 28 C 1.53043 * 109.46005 * 275.06545 * 10 9 7 29 29 H 0.96998 * 119.99909 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00398 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46049 * 35.02224 * 10 9 7 32 32 H 1.09003 * 109.49817 * 61.43423 * 11 10 9 33 33 H 1.09002 * 109.52480 * 301.35207 * 11 10 9 34 34 H 1.08996 * 109.59055 * 185.57726 * 12 11 10 35 35 H 1.09004 * 109.70466 * 65.21964 * 12 11 10 36 36 H 1.09001 * 117.51774 * 145.04084 * 18 16 14 37 37 H 1.09003 * 117.49043 * 359.97438 * 18 16 14 38 38 H 1.08005 * 120.41274 * 0.02562 * 22 21 19 39 39 H 1.07994 * 119.62195 * 180.02562 * 23 22 21 40 40 H 1.07999 * 119.61410 * 179.97438 * 25 24 23 41 41 H 1.08005 * 120.41663 * 179.97438 * 26 25 24 42 42 H 1.08992 * 109.59042 * 65.92257 * 27 13 12 43 43 H 1.09003 * 109.59017 * 186.35348 * 27 13 12 44 44 H 1.09001 * 109.49617 * 298.56649 * 28 10 9 45 45 H 1.09005 * 109.49412 * 58.63007 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 5.4998 -2.2590 -0.6073 12 6 6.2498 -3.5944 -0.6362 13 7 6.2663 -4.1569 0.7210 14 6 7.4283 -4.5181 1.3005 15 8 8.4736 -4.3796 0.7013 16 6 7.4288 -5.0932 2.6935 17 1 6.5670 -5.7102 2.9479 18 6 8.0442 -4.2438 3.8085 19 6 8.7799 -5.4832 3.2963 20 1 9.6683 -5.3243 2.6852 21 6 8.8176 -6.6915 4.1962 22 6 9.6121 -7.7841 3.8844 23 6 9.6207 -8.8747 4.7331 24 7 8.8848 -8.8836 5.8274 25 6 8.1176 -7.8625 6.1553 26 6 8.0578 -6.7374 5.3550 27 6 4.9915 -4.3240 1.4321 28 6 4.2562 -2.9752 1.4400 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3621 0.0007 31 1 3.5651 -3.2065 -0.5873 32 1 6.0566 -1.5420 -0.0038 33 1 5.3971 -1.8774 -1.6231 34 1 7.2724 -3.4319 -0.9768 35 1 5.7450 -4.2849 -1.3118 36 1 7.5873 -4.3021 4.7964 37 1 8.4488 -3.2697 3.5338 38 1 10.2167 -7.7829 2.9894 39 1 10.2372 -9.7295 4.4976 40 1 7.5284 -7.9063 7.0594 41 1 7.4271 -5.9045 5.6287 42 1 4.3839 -5.0715 0.9222 43 1 5.1835 -4.6430 2.4566 44 1 4.8246 -2.2514 2.0241 45 1 3.2677 -3.1030 1.8813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996602292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:14 Heat of formation + Delta-G solvation = 21.114975 kcal Electronic energy + Delta-G solvation = -25543.633043 eV Core-core repulsion = 21947.233167 eV Total energy + Delta-G solvation = -3596.399876 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.69741 -40.92416 -39.11187 -37.65467 -36.24819 -33.95098 -33.02162 -32.17093 -32.00112 -31.48412 -27.17358 -25.78489 -25.17328 -24.34530 -24.20157 -23.31614 -21.96438 -21.48350 -20.07280 -19.38282 -18.79619 -17.56820 -17.35286 -16.81123 -16.70936 -16.40777 -16.24681 -15.85790 -15.30288 -15.27457 -14.92859 -14.84543 -14.77324 -14.57156 -14.38150 -14.09065 -13.59109 -13.44501 -13.25200 -12.94956 -12.94245 -12.65736 -12.53126 -12.22096 -12.13497 -12.06172 -11.96864 -11.78222 -11.60737 -11.34426 -11.01988 -10.81276 -10.42314 -10.25081 -10.06584 -9.71325 -9.30233 -8.01083 -5.34038 0.20603 0.22758 1.38348 1.40487 1.42404 1.47849 1.92326 2.48908 2.67088 3.03174 3.25423 3.30673 3.53066 3.56810 3.62330 3.69877 3.78805 3.91568 4.01442 4.04120 4.16000 4.18724 4.22157 4.28728 4.33447 4.38646 4.57475 4.64252 4.73090 4.77370 4.79932 4.82529 4.88600 4.94098 4.96782 5.02119 5.05369 5.13095 5.26866 5.42838 5.46874 5.59876 5.79136 5.79390 6.23154 6.37549 7.05470 7.09036 7.09430 7.85806 8.03812 9.20239 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023383 B = 0.002534 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.177488 B =11047.525503 C =11564.648570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.952 3.048 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.254 1.254 7 C -0.223 4.223 8 H 0.061 0.939 9 N -0.753 5.753 10 C 0.174 3.826 11 C -0.130 4.130 12 C 0.120 3.880 13 N -0.602 5.602 14 C 0.541 3.459 15 O -0.584 6.584 16 C -0.176 4.176 17 H 0.147 0.853 18 C -0.125 4.125 19 C -0.090 4.090 20 H 0.116 0.884 21 C -0.015 4.015 22 C -0.172 4.172 23 C 0.090 3.910 24 N -0.518 5.518 25 C 0.091 3.909 26 C -0.171 4.171 27 C 0.114 3.886 28 C -0.141 4.141 29 H 0.256 0.744 30 H 0.363 0.637 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.100 0.900 38 H 0.145 0.855 39 H 0.174 0.826 40 H 0.177 0.823 41 H 0.159 0.841 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.057 0.943 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.101 -14.859 10.151 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.780 3.220 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.179 1.179 7 C -0.354 4.354 8 H 0.079 0.921 9 N -0.395 5.395 10 C 0.067 3.933 11 C -0.169 4.169 12 C -0.003 4.003 13 N -0.334 5.334 14 C 0.331 3.669 15 O -0.465 6.465 16 C -0.197 4.197 17 H 0.164 0.836 18 C -0.163 4.163 19 C -0.108 4.108 20 H 0.134 0.866 21 C -0.024 4.024 22 C -0.191 4.191 23 C -0.066 4.066 24 N -0.227 5.227 25 C -0.065 4.065 26 C -0.190 4.190 27 C -0.008 4.008 28 C -0.182 4.182 29 H 0.065 0.935 30 H 0.196 0.804 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.155 0.845 37 H 0.119 0.881 38 H 0.163 0.837 39 H 0.191 0.809 40 H 0.194 0.806 41 H 0.177 0.823 42 H 0.099 0.901 43 H 0.129 0.871 44 H 0.075 0.925 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 20.438 -15.605 10.355 27.721 hybrid contribution -0.218 2.050 -0.913 2.255 sum 20.220 -13.555 9.442 26.110 Atomic orbital electron populations 1.69874 1.07034 1.26504 1.60042 1.25453 0.96031 1.01044 1.03096 0.85460 0.78580 0.80106 0.77890 1.20782 1.22567 1.17877 1.19020 0.82489 0.93385 1.40502 0.92067 1.42847 1.02505 1.03929 1.90268 1.20413 0.91015 0.87269 0.94640 1.22100 0.95387 0.97487 1.01960 1.21536 1.01606 0.94045 0.83085 1.48145 1.06988 1.61568 1.16666 1.20045 0.82616 0.76844 0.87423 1.90655 1.32503 1.57286 1.66011 1.22375 0.99383 1.06355 0.91599 0.83571 1.23274 1.00386 0.94849 0.97742 1.20960 0.95583 0.94060 1.00218 0.86634 1.19614 0.94887 0.93742 0.94115 1.22210 1.00886 0.94166 1.01874 1.23103 0.95829 0.98137 0.89502 1.67705 1.07333 1.29426 1.18267 1.23185 0.95159 0.88527 0.99650 1.22306 1.00915 1.00805 0.94968 1.22005 0.83087 0.97070 0.98647 1.22497 1.00136 0.96644 0.98873 0.93481 0.80422 0.93345 0.92243 0.90268 0.89590 0.90062 0.84540 0.88121 0.83702 0.80896 0.80597 0.82321 0.90105 0.87111 0.92469 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.77 13.97 21.65 0.30 -61.47 16 2 C -0.06 -3.72 5.50 84.86 0.47 -3.26 16 3 Si 0.95 44.66 27.74 68.60 1.90 46.56 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.25 -10.77 6.52 99.48 0.65 -10.13 16 7 C -0.22 -12.10 10.41 84.03 0.87 -11.23 16 8 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 9 N -0.75 -33.07 4.92 -322.82 -1.59 -34.66 16 10 C 0.17 5.91 2.73 45.02 0.12 6.04 16 11 C -0.13 -3.65 5.55 30.67 0.17 -3.48 16 12 C 0.12 2.93 6.43 86.36 0.56 3.49 16 13 N -0.60 -13.93 2.97 -818.07 -2.43 -16.35 16 14 C 0.54 12.96 7.48 87.66 0.66 13.62 16 15 O -0.58 -18.00 15.67 -3.03 -0.05 -18.05 16 16 C -0.18 -2.90 4.62 -11.52 -0.05 -2.96 16 17 H 0.15 1.86 6.80 -2.39 -0.02 1.84 16 18 C -0.13 -1.67 9.59 30.60 0.29 -1.38 16 19 C -0.09 -1.42 5.59 -11.55 -0.06 -1.48 16 20 H 0.12 2.21 7.67 -2.39 -0.02 2.19 16 21 C -0.02 -0.23 5.64 -19.67 -0.11 -0.34 16 22 C -0.17 -2.54 9.84 22.36 0.22 -2.32 16 23 C 0.09 1.37 11.18 84.68 0.95 2.32 16 24 N -0.52 -9.33 10.36 -195.86 -2.03 -11.36 16 25 C 0.09 1.28 11.18 84.68 0.95 2.23 16 26 C -0.17 -2.11 9.38 22.36 0.21 -1.90 16 27 C 0.11 2.35 6.33 86.51 0.55 2.90 16 28 C -0.14 -4.03 5.67 30.82 0.17 -3.86 16 29 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 30 H 0.36 15.61 5.66 -92.71 -0.52 15.08 16 31 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 2.21 7.00 -2.39 -0.02 2.19 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.14 1.09 6.26 -2.39 -0.01 1.07 16 37 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 39 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 41 H 0.16 1.15 6.17 -2.91 -0.02 1.13 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 43 H 0.11 1.65 5.66 -2.39 -0.01 1.64 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -72.97 364.33 2.49 -70.48 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.42 Total: 26.47 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 5.96 Total: -1.61 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -5.74 Total: -123.84 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.05 Total: -18.05 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.90 Total: 46.56 kcal Total: -72.97 2.49 -70.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996602292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.595 kcal (2) G-P(sol) polarization free energy of solvation -72.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds