Wall clock time and date at job start Tue Mar 31 2020 11:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48506 * 109.46742 * 269.99408 * 3 2 1 5 5 H 1.48492 * 109.47051 * 29.99365 * 3 2 1 6 6 H 1.48495 * 109.47205 * 149.99923 * 3 2 1 7 7 C 1.38816 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99919 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99913 * 180.02562 * 7 2 1 10 10 C 1.46490 * 119.99962 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.50083 * 324.93420 * 10 9 7 12 12 C 1.53042 * 109.50017 * 84.99883 * 10 9 7 13 13 C 1.53039 * 109.54198 * 181.34928 * 12 10 9 14 14 C 1.53196 * 109.33748 * 298.62051 * 13 12 10 15 15 N 1.46992 * 108.73878 * 54.61838 * 14 13 12 16 16 C 1.34784 * 120.60795 * 126.38575 * 15 14 13 17 17 O 1.21283 * 119.99359 * 180.02562 * 16 15 14 18 18 C 1.50691 * 120.00259 * 0.02599 * 16 15 14 19 19 H 1.08999 * 115.55441 * 34.27759 * 18 16 15 20 20 C 1.53006 * 117.49710 * 248.60398 * 18 16 15 21 21 C 1.53002 * 60.00164 * 252.51010 * 20 18 16 22 22 H 1.08998 * 117.49747 * 107.48581 * 21 20 18 23 23 C 1.50696 * 117.50191 * 252.51196 * 21 20 18 24 24 C 1.38645 * 120.79040 * 8.33913 * 23 21 20 25 25 C 1.38200 * 119.16399 * 179.75828 * 24 23 21 26 26 N 1.31869 * 120.76441 * 0.52881 * 25 24 23 27 27 C 1.31867 * 121.72430 * 359.74635 * 26 25 24 28 28 C 1.38208 * 120.76329 * 359.97438 * 27 26 25 29 29 C 1.46922 * 118.75940 * 306.41163 * 15 14 13 30 30 H 0.97000 * 120.00279 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99999 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.45643 * 61.32561 * 12 10 9 33 33 H 1.08997 * 109.46149 * 301.37187 * 12 10 9 34 34 H 1.09002 * 109.49756 * 58.58775 * 13 12 10 35 35 H 1.09000 * 109.49883 * 178.65518 * 13 12 10 36 36 H 1.09001 * 109.58261 * 174.43824 * 14 13 12 37 37 H 1.08996 * 109.58319 * 294.86146 * 14 13 12 38 38 H 1.08998 * 117.49914 * 0.02562 * 20 18 16 39 39 H 1.08999 * 117.49844 * 145.00129 * 20 18 16 40 40 H 1.08007 * 120.41999 * 0.02562 * 24 23 21 41 41 H 1.08004 * 119.62408 * 180.29669 * 25 24 23 42 42 H 1.08004 * 119.61924 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.41321 * 180.02562 * 28 27 26 44 44 H 1.09004 * 109.58306 * 293.82373 * 29 15 14 45 45 H 1.08994 * 109.70589 * 173.46329 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4708 0.0011 11 1 3.5654 -3.2066 0.5910 12 6 4.2591 -2.9758 -1.4361 13 6 4.9947 -4.3178 -1.4344 14 6 6.3954 -4.1278 -0.8437 15 7 6.2683 -3.5068 0.4825 16 6 6.8432 -4.0718 1.5628 17 8 6.7308 -3.5501 2.6519 18 6 7.6256 -5.3515 1.4173 19 1 8.1741 -5.4634 0.4821 20 6 7.0356 -6.6155 2.0460 21 6 8.2543 -5.9426 2.6808 22 1 8.1020 -5.4058 3.6171 23 6 9.5850 -6.6351 2.5372 24 6 9.7242 -7.7412 1.7130 25 6 10.9613 -8.3473 1.6024 26 7 11.9985 -7.8914 2.2771 27 6 11.9017 -6.8454 3.0743 28 6 10.6979 -6.1847 3.2306 29 6 5.5024 -2.2594 0.6085 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3622 0.0014 32 1 4.8272 -2.2510 -2.0193 33 1 3.2714 -3.1037 -1.8790 34 1 4.4397 -5.0362 -0.8310 35 1 5.0780 -4.6884 -2.4561 36 1 6.8864 -5.0963 -0.7491 37 1 6.9820 -3.4805 -1.4955 38 1 6.0814 -6.5215 2.5644 39 1 7.1961 -7.5590 1.5244 40 1 8.8775 -8.1219 1.1610 41 1 11.0793 -9.2065 0.9587 42 1 12.7733 -6.5010 3.6113 43 1 10.6252 -5.3284 3.8847 44 1 6.0164 -1.4597 0.0751 45 1 5.4047 -1.9928 1.6608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999194246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:23 Heat of formation + Delta-G solvation = 42.705249 kcal Electronic energy + Delta-G solvation = -25604.406687 eV Core-core repulsion = 22008.943036 eV Total energy + Delta-G solvation = -3595.463652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.91335 -40.08792 -38.00912 -36.66580 -34.68338 -32.43326 -32.16383 -31.54557 -31.42958 -29.08488 -26.07733 -24.94123 -24.31616 -23.68955 -22.90632 -22.00471 -21.21868 -20.08336 -18.84637 -17.99870 -17.68056 -16.81821 -16.56014 -15.91134 -15.83598 -15.22289 -14.79215 -14.57972 -14.25207 -14.15554 -14.03557 -13.90788 -13.75677 -13.58044 -12.86717 -12.78824 -12.64638 -12.43833 -12.35198 -11.97547 -11.53209 -11.30898 -11.14781 -11.04409 -10.90525 -10.72037 -10.57708 -10.45578 -10.12431 -9.86141 -9.82284 -9.63849 -9.57405 -9.51645 -8.97601 -8.54695 -7.33621 -5.80931 -3.17794 0.76919 0.80964 2.40946 2.88257 3.34088 3.35442 3.38353 3.43615 3.68166 3.98833 4.11007 4.28901 4.40204 4.44970 4.55670 4.65037 4.70554 4.78341 4.84612 4.86903 5.05566 5.14780 5.24102 5.30644 5.33217 5.42444 5.44847 5.47634 5.53884 5.56419 5.62927 5.67376 5.74177 5.87277 5.98296 6.02339 6.06290 6.26128 6.32821 6.39826 6.53191 6.74278 6.89648 7.42163 7.61436 7.93416 8.16080 8.37312 9.14748 9.87192 10.05848 11.37054 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029213 B = 0.002504 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.245386 B =11178.300750 C =11542.682756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.174 3.826 11 H 0.058 0.942 12 C -0.138 4.138 13 C -0.133 4.133 14 C 0.107 3.893 15 N -0.600 5.600 16 C 0.542 3.458 17 O -0.540 6.540 18 C -0.170 4.170 19 H 0.126 0.874 20 C -0.139 4.139 21 C -0.094 4.094 22 H 0.132 0.868 23 C -0.005 4.005 24 C -0.174 4.174 25 C 0.100 3.900 26 N -0.491 5.491 27 C 0.100 3.900 28 C -0.163 4.163 29 C 0.103 3.897 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.137 0.863 44 H 0.063 0.937 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.912 -16.733 0.503 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.063 3.937 11 H 0.076 0.924 12 C -0.179 4.179 13 C -0.172 4.172 14 C -0.016 4.016 15 N -0.332 5.332 16 C 0.330 3.670 17 O -0.418 6.418 18 C -0.191 4.191 19 H 0.144 0.856 20 C -0.176 4.176 21 C -0.112 4.112 22 H 0.150 0.850 23 C -0.013 4.013 24 C -0.194 4.194 25 C -0.056 4.056 26 N -0.200 5.200 27 C -0.056 4.056 28 C -0.183 4.183 29 C -0.020 4.020 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.154 0.846 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.155 0.845 44 H 0.082 0.918 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 22.388 -16.904 1.009 28.071 hybrid contribution -0.349 1.757 -0.172 1.799 sum 22.039 -15.147 0.838 26.755 Atomic orbital electron populations 1.69696 1.05103 1.25910 1.57232 1.24673 0.95242 0.97242 1.01838 0.86554 0.79304 0.84957 0.77755 1.21062 1.21672 1.20242 1.19021 0.80258 0.94739 1.43366 0.89172 1.42670 1.04112 1.01699 1.90291 1.20440 0.89950 0.89681 0.93614 0.92353 1.22252 1.00697 0.94781 1.00127 1.21925 0.95186 0.99377 1.00668 1.21837 0.98240 0.98037 0.83478 1.47986 1.51851 1.25619 1.07753 1.19501 0.79022 0.84647 0.83870 1.90706 1.61169 1.63891 1.26016 1.22357 1.04071 0.94093 0.98614 0.85576 1.23153 0.97831 0.94641 1.01951 1.21107 0.90166 1.01952 0.97989 0.84998 1.19551 0.93816 0.93747 0.94209 1.22080 0.99536 0.97094 1.00690 1.22756 0.88148 0.98521 0.96218 1.67679 1.32771 1.12633 1.06929 1.22783 0.97038 0.91101 0.94709 1.22055 0.93296 1.01688 1.01273 1.22021 0.92175 0.84374 1.03399 0.92990 0.80584 0.92561 0.90994 0.91581 0.91133 0.90017 0.91405 0.87192 0.87244 0.84574 0.82693 0.82630 0.84494 0.91832 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.03 13.97 55.49 0.78 -28.25 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.93 27.74 -169.99 -4.71 17.22 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 7 C -0.24 -6.77 10.41 -15.06 -0.16 -6.92 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.25 4.93 -53.31 -0.26 -17.52 16 10 C 0.17 3.24 2.92 -67.81 -0.20 3.04 16 11 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 12 C -0.14 -2.19 5.47 -26.69 -0.15 -2.33 16 13 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16 14 C 0.11 1.09 6.30 -3.67 -0.02 1.07 16 15 N -0.60 -8.11 2.97 -172.72 -0.51 -8.62 16 16 C 0.54 7.51 7.48 -10.99 -0.08 7.42 16 17 O -0.54 -9.57 15.67 5.55 0.09 -9.48 16 18 C -0.17 -1.62 4.61 -91.77 -0.42 -2.04 16 19 H 0.13 0.97 6.82 -51.93 -0.35 0.61 16 20 C -0.14 -1.09 9.59 -26.73 -0.26 -1.35 16 21 C -0.09 -0.85 5.59 -91.77 -0.51 -1.36 16 22 H 0.13 1.39 7.67 -51.93 -0.40 0.99 16 23 C -0.01 -0.04 5.64 -104.32 -0.59 -0.63 16 24 C -0.17 -1.25 9.39 -39.44 -0.37 -1.62 16 25 C 0.10 0.77 11.18 -17.55 -0.20 0.57 16 26 N -0.49 -4.66 10.36 -13.25 -0.14 -4.80 16 27 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 28 C -0.16 -1.33 9.84 -39.44 -0.39 -1.72 16 29 C 0.10 1.70 5.90 -3.71 -0.02 1.68 16 30 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.36 8.23 5.66 -40.82 -0.23 8.00 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.62 5.68 -51.93 -0.29 0.32 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.11 0.59 6.25 -51.93 -0.32 0.27 16 40 H 0.14 0.67 6.16 -52.48 -0.32 0.35 16 41 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.16 0.89 8.06 -52.48 -0.42 0.46 16 43 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 1.75 7.01 -51.93 -0.36 1.39 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -34.16 364.32 -9.62 -43.78 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.53 Total: 7.36 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -3.82 Total: -5.18 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.14 Total: -59.19 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.16 -9.62 -43.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999194246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.490 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds