Wall clock time and date at job start Tue Mar 31 2020 11:17:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86801 * 120.00011 * 2 1
4 4 H 1.48506 * 109.46742 * 269.99408 * 3 2 1
5 5 H 1.48492 * 109.47051 * 29.99365 * 3 2 1
6 6 H 1.48495 * 109.47205 * 149.99923 * 3 2 1
7 7 C 1.38816 * 119.99909 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99919 * 0.02562 * 7 2 1
9 9 N 1.36937 * 119.99913 * 180.02562 * 7 2 1
10 10 C 1.46490 * 119.99962 * 180.02562 * 9 7 2
11 11 H 1.08998 * 109.50083 * 324.93420 * 10 9 7
12 12 C 1.53042 * 109.50017 * 84.99883 * 10 9 7
13 13 C 1.53039 * 109.54198 * 181.34928 * 12 10 9
14 14 C 1.53196 * 109.33748 * 298.62051 * 13 12 10
15 15 N 1.46992 * 108.73878 * 54.61838 * 14 13 12
16 16 C 1.34784 * 120.60795 * 126.38575 * 15 14 13
17 17 O 1.21283 * 119.99359 * 180.02562 * 16 15 14
18 18 C 1.50691 * 120.00259 * 0.02599 * 16 15 14
19 19 H 1.08999 * 115.55441 * 34.27759 * 18 16 15
20 20 C 1.53006 * 117.49710 * 248.60398 * 18 16 15
21 21 C 1.53002 * 60.00164 * 252.51010 * 20 18 16
22 22 H 1.08998 * 117.49747 * 107.48581 * 21 20 18
23 23 C 1.50696 * 117.50191 * 252.51196 * 21 20 18
24 24 C 1.38645 * 120.79040 * 8.33913 * 23 21 20
25 25 C 1.38200 * 119.16399 * 179.75828 * 24 23 21
26 26 N 1.31869 * 120.76441 * 0.52881 * 25 24 23
27 27 C 1.31867 * 121.72430 * 359.74635 * 26 25 24
28 28 C 1.38208 * 120.76329 * 359.97438 * 27 26 25
29 29 C 1.46922 * 118.75940 * 306.41163 * 15 14 13
30 30 H 0.97000 * 120.00279 * 0.02562 * 1 2 3
31 31 H 0.96996 * 119.99999 * 0.02562 * 9 7 2
32 32 H 1.09006 * 109.45643 * 61.32561 * 12 10 9
33 33 H 1.08997 * 109.46149 * 301.37187 * 12 10 9
34 34 H 1.09002 * 109.49756 * 58.58775 * 13 12 10
35 35 H 1.09000 * 109.49883 * 178.65518 * 13 12 10
36 36 H 1.09001 * 109.58261 * 174.43824 * 14 13 12
37 37 H 1.08996 * 109.58319 * 294.86146 * 14 13 12
38 38 H 1.08998 * 117.49914 * 0.02562 * 20 18 16
39 39 H 1.08999 * 117.49844 * 145.00129 * 20 18 16
40 40 H 1.08007 * 120.41999 * 0.02562 * 24 23 21
41 41 H 1.08004 * 119.62408 * 180.29669 * 25 24 23
42 42 H 1.08004 * 119.61924 * 179.97438 * 27 26 25
43 43 H 1.08001 * 120.41321 * 180.02562 * 28 27 26
44 44 H 1.09004 * 109.58306 * 293.82373 * 29 15 14
45 45 H 1.08994 * 109.70589 * 173.46329 * 29 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4978 2.0463 -1.4002
5 1 1.4476 2.6526 0.6999
6 1 3.5477 1.4402 0.7000
7 6 2.0102 -1.2022 0.0005
8 1 1.4702 -2.1375 0.0005
9 7 3.3796 -1.2022 0.0011
10 6 4.1120 -2.4708 0.0011
11 1 3.5654 -3.2066 0.5910
12 6 4.2591 -2.9758 -1.4361
13 6 4.9947 -4.3178 -1.4344
14 6 6.3954 -4.1278 -0.8437
15 7 6.2683 -3.5068 0.4825
16 6 6.8432 -4.0718 1.5628
17 8 6.7308 -3.5501 2.6519
18 6 7.6256 -5.3515 1.4173
19 1 8.1741 -5.4634 0.4821
20 6 7.0356 -6.6155 2.0460
21 6 8.2543 -5.9426 2.6808
22 1 8.1020 -5.4058 3.6171
23 6 9.5850 -6.6351 2.5372
24 6 9.7242 -7.7412 1.7130
25 6 10.9613 -8.3473 1.6024
26 7 11.9985 -7.8914 2.2771
27 6 11.9017 -6.8454 3.0743
28 6 10.6979 -6.1847 3.2306
29 6 5.5024 -2.2594 0.6085
30 1 -0.4850 0.8400 -0.0004
31 1 3.8646 -0.3622 0.0014
32 1 4.8272 -2.2510 -2.0193
33 1 3.2714 -3.1037 -1.8790
34 1 4.4397 -5.0362 -0.8310
35 1 5.0780 -4.6884 -2.4561
36 1 6.8864 -5.0963 -0.7491
37 1 6.9820 -3.4805 -1.4955
38 1 6.0814 -6.5215 2.5644
39 1 7.1961 -7.5590 1.5244
40 1 8.8775 -8.1219 1.1610
41 1 11.0793 -9.2065 0.9587
42 1 12.7733 -6.5010 3.6113
43 1 10.6252 -5.3284 3.8847
44 1 6.0164 -1.4597 0.0751
45 1 5.4047 -1.9928 1.6608
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000999194246.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:17:23
Heat of formation + Delta-G solvation = 42.705249 kcal
Electronic energy + Delta-G solvation = -25604.406687 eV
Core-core repulsion = 22008.943036 eV
Total energy + Delta-G solvation = -3595.463652 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.91335 -40.08792 -38.00912 -36.66580 -34.68338 -32.43326 -32.16383 -31.54557
-31.42958 -29.08488 -26.07733 -24.94123 -24.31616 -23.68955 -22.90632 -22.00471
-21.21868 -20.08336 -18.84637 -17.99870 -17.68056 -16.81821 -16.56014 -15.91134
-15.83598 -15.22289 -14.79215 -14.57972 -14.25207 -14.15554 -14.03557 -13.90788
-13.75677 -13.58044 -12.86717 -12.78824 -12.64638 -12.43833 -12.35198 -11.97547
-11.53209 -11.30898 -11.14781 -11.04409 -10.90525 -10.72037 -10.57708 -10.45578
-10.12431 -9.86141 -9.82284 -9.63849 -9.57405 -9.51645 -8.97601 -8.54695
-7.33621 -5.80931 -3.17794 0.76919 0.80964 2.40946 2.88257 3.34088
3.35442 3.38353 3.43615 3.68166 3.98833 4.11007 4.28901 4.40204
4.44970 4.55670 4.65037 4.70554 4.78341 4.84612 4.86903 5.05566
5.14780 5.24102 5.30644 5.33217 5.42444 5.44847 5.47634 5.53884
5.56419 5.62927 5.67376 5.74177 5.87277 5.98296 6.02339 6.06290
6.26128 6.32821 6.39826 6.53191 6.74278 6.89648 7.42163 7.61436
7.93416 8.16080 8.37312 9.14748 9.87192 10.05848 11.37054
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.029213 B = 0.002504 C = 0.002425
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 958.245386 B =11178.300750 C =11542.682756
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.006 3.994
3 Si 0.884 3.116
4 H -0.284 1.284
5 H -0.290 1.290
6 H -0.276 1.276
7 C -0.244 4.244
8 H 0.090 0.910
9 N -0.745 5.745
10 C 0.174 3.826
11 H 0.058 0.942
12 C -0.138 4.138
13 C -0.133 4.133
14 C 0.107 3.893
15 N -0.600 5.600
16 C 0.542 3.458
17 O -0.540 6.540
18 C -0.170 4.170
19 H 0.126 0.874
20 C -0.139 4.139
21 C -0.094 4.094
22 H 0.132 0.868
23 C -0.005 4.005
24 C -0.174 4.174
25 C 0.100 3.900
26 N -0.491 5.491
27 C 0.100 3.900
28 C -0.163 4.163
29 C 0.103 3.897
30 H 0.260 0.740
31 H 0.361 0.639
32 H 0.056 0.944
33 H 0.071 0.929
34 H 0.065 0.935
35 H 0.070 0.930
36 H 0.082 0.918
37 H 0.068 0.932
38 H 0.110 0.890
39 H 0.109 0.891
40 H 0.137 0.863
41 H 0.156 0.844
42 H 0.156 0.844
43 H 0.137 0.863
44 H 0.063 0.937
45 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.912 -16.733 0.503 27.575
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.190 4.190
3 Si 0.714 3.286
4 H -0.211 1.211
5 H -0.217 1.217
6 H -0.202 1.202
7 C -0.374 4.374
8 H 0.108 0.892
9 N -0.388 5.388
10 C 0.063 3.937
11 H 0.076 0.924
12 C -0.179 4.179
13 C -0.172 4.172
14 C -0.016 4.016
15 N -0.332 5.332
16 C 0.330 3.670
17 O -0.418 6.418
18 C -0.191 4.191
19 H 0.144 0.856
20 C -0.176 4.176
21 C -0.112 4.112
22 H 0.150 0.850
23 C -0.013 4.013
24 C -0.194 4.194
25 C -0.056 4.056
26 N -0.200 5.200
27 C -0.056 4.056
28 C -0.183 4.183
29 C -0.020 4.020
30 H 0.070 0.930
31 H 0.194 0.806
32 H 0.074 0.926
33 H 0.090 0.910
34 H 0.084 0.916
35 H 0.089 0.911
36 H 0.100 0.900
37 H 0.086 0.914
38 H 0.128 0.872
39 H 0.128 0.872
40 H 0.154 0.846
41 H 0.173 0.827
42 H 0.174 0.826
43 H 0.155 0.845
44 H 0.082 0.918
45 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 22.388 -16.904 1.009 28.071
hybrid contribution -0.349 1.757 -0.172 1.799
sum 22.039 -15.147 0.838 26.755
Atomic orbital electron populations
1.69696 1.05103 1.25910 1.57232 1.24673 0.95242 0.97242 1.01838
0.86554 0.79304 0.84957 0.77755 1.21062 1.21672 1.20242 1.19021
0.80258 0.94739 1.43366 0.89172 1.42670 1.04112 1.01699 1.90291
1.20440 0.89950 0.89681 0.93614 0.92353 1.22252 1.00697 0.94781
1.00127 1.21925 0.95186 0.99377 1.00668 1.21837 0.98240 0.98037
0.83478 1.47986 1.51851 1.25619 1.07753 1.19501 0.79022 0.84647
0.83870 1.90706 1.61169 1.63891 1.26016 1.22357 1.04071 0.94093
0.98614 0.85576 1.23153 0.97831 0.94641 1.01951 1.21107 0.90166
1.01952 0.97989 0.84998 1.19551 0.93816 0.93747 0.94209 1.22080
0.99536 0.97094 1.00690 1.22756 0.88148 0.98521 0.96218 1.67679
1.32771 1.12633 1.06929 1.22783 0.97038 0.91101 0.94709 1.22055
0.93296 1.01688 1.01273 1.22021 0.92175 0.84374 1.03399 0.92990
0.80584 0.92561 0.90994 0.91581 0.91133 0.90017 0.91405 0.87192
0.87244 0.84574 0.82693 0.82630 0.84494 0.91832 0.88801
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.03 13.97 55.49 0.78 -28.25 16
2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16
3 Si 0.88 21.93 27.74 -169.99 -4.71 17.22 16
4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16
5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16
6 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16
7 C -0.24 -6.77 10.41 -15.06 -0.16 -6.92 16
8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16
9 N -0.75 -17.25 4.93 -53.31 -0.26 -17.52 16
10 C 0.17 3.24 2.92 -67.81 -0.20 3.04 16
11 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16
12 C -0.14 -2.19 5.47 -26.69 -0.15 -2.33 16
13 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16
14 C 0.11 1.09 6.30 -3.67 -0.02 1.07 16
15 N -0.60 -8.11 2.97 -172.72 -0.51 -8.62 16
16 C 0.54 7.51 7.48 -10.99 -0.08 7.42 16
17 O -0.54 -9.57 15.67 5.55 0.09 -9.48 16
18 C -0.17 -1.62 4.61 -91.77 -0.42 -2.04 16
19 H 0.13 0.97 6.82 -51.93 -0.35 0.61 16
20 C -0.14 -1.09 9.59 -26.73 -0.26 -1.35 16
21 C -0.09 -0.85 5.59 -91.77 -0.51 -1.36 16
22 H 0.13 1.39 7.67 -51.93 -0.40 0.99 16
23 C -0.01 -0.04 5.64 -104.32 -0.59 -0.63 16
24 C -0.17 -1.25 9.39 -39.44 -0.37 -1.62 16
25 C 0.10 0.77 11.18 -17.55 -0.20 0.57 16
26 N -0.49 -4.66 10.36 -13.25 -0.14 -4.80 16
27 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16
28 C -0.16 -1.33 9.84 -39.44 -0.39 -1.72 16
29 C 0.10 1.70 5.90 -3.71 -0.02 1.68 16
30 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16
31 H 0.36 8.23 5.66 -40.82 -0.23 8.00 16
32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
36 H 0.08 0.62 5.68 -51.93 -0.29 0.32 16
37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
38 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16
39 H 0.11 0.59 6.25 -51.93 -0.32 0.27 16
40 H 0.14 0.67 6.16 -52.48 -0.32 0.35 16
41 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16
42 H 0.16 0.89 8.06 -52.48 -0.42 0.46 16
43 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16
44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
45 H 0.09 1.75 7.01 -51.93 -0.36 1.39 16
LS Contribution 364.32 15.07 5.49 5.49
Total: -1.00 -34.16 364.32 -9.62 -43.78
By element:
Atomic # 1 Polarization: 13.89 SS G_CDS: -6.53 Total: 7.36 kcal
Atomic # 6 Polarization: -1.37 SS G_CDS: -3.82 Total: -5.18 kcal
Atomic # 7 Polarization: -59.05 SS G_CDS: -0.14 Total: -59.19 kcal
Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -34.16 -9.62 -43.78 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999194246.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.490 kcal
(2) G-P(sol) polarization free energy of solvation -34.162 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.328 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.705 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds