Wall clock time and date at job start Tue Mar 31 2020 11:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48506 * 109.46742 * 269.99408 * 3 2 1 5 5 H 1.48492 * 109.47051 * 29.99365 * 3 2 1 6 6 H 1.48495 * 109.47205 * 149.99923 * 3 2 1 7 7 C 1.38816 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99919 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99913 * 180.02562 * 7 2 1 10 10 C 1.46490 * 119.99962 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.50083 * 324.93420 * 10 9 7 12 12 C 1.53042 * 109.50017 * 84.99883 * 10 9 7 13 13 C 1.53039 * 109.54198 * 181.34928 * 12 10 9 14 14 C 1.53196 * 109.33748 * 298.62051 * 13 12 10 15 15 N 1.46992 * 108.73878 * 54.61838 * 14 13 12 16 16 C 1.34784 * 120.60795 * 126.38575 * 15 14 13 17 17 O 1.21283 * 119.99359 * 180.02562 * 16 15 14 18 18 C 1.50691 * 120.00259 * 0.02599 * 16 15 14 19 19 H 1.08999 * 115.55441 * 34.27759 * 18 16 15 20 20 C 1.53006 * 117.49710 * 248.60398 * 18 16 15 21 21 C 1.53002 * 60.00164 * 252.51010 * 20 18 16 22 22 H 1.08998 * 117.49747 * 107.48581 * 21 20 18 23 23 C 1.50696 * 117.50191 * 252.51196 * 21 20 18 24 24 C 1.38645 * 120.79040 * 8.33913 * 23 21 20 25 25 C 1.38200 * 119.16399 * 179.75828 * 24 23 21 26 26 N 1.31869 * 120.76441 * 0.52881 * 25 24 23 27 27 C 1.31867 * 121.72430 * 359.74635 * 26 25 24 28 28 C 1.38208 * 120.76329 * 359.97438 * 27 26 25 29 29 C 1.46922 * 118.75940 * 306.41163 * 15 14 13 30 30 H 0.97000 * 120.00279 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99999 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.45643 * 61.32561 * 12 10 9 33 33 H 1.08997 * 109.46149 * 301.37187 * 12 10 9 34 34 H 1.09002 * 109.49756 * 58.58775 * 13 12 10 35 35 H 1.09000 * 109.49883 * 178.65518 * 13 12 10 36 36 H 1.09001 * 109.58261 * 174.43824 * 14 13 12 37 37 H 1.08996 * 109.58319 * 294.86146 * 14 13 12 38 38 H 1.08998 * 117.49914 * 0.02562 * 20 18 16 39 39 H 1.08999 * 117.49844 * 145.00129 * 20 18 16 40 40 H 1.08007 * 120.41999 * 0.02562 * 24 23 21 41 41 H 1.08004 * 119.62408 * 180.29669 * 25 24 23 42 42 H 1.08004 * 119.61924 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.41321 * 180.02562 * 28 27 26 44 44 H 1.09004 * 109.58306 * 293.82373 * 29 15 14 45 45 H 1.08994 * 109.70589 * 173.46329 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4708 0.0011 11 1 3.5654 -3.2066 0.5910 12 6 4.2591 -2.9758 -1.4361 13 6 4.9947 -4.3178 -1.4344 14 6 6.3954 -4.1278 -0.8437 15 7 6.2683 -3.5068 0.4825 16 6 6.8432 -4.0718 1.5628 17 8 6.7308 -3.5501 2.6519 18 6 7.6256 -5.3515 1.4173 19 1 8.1741 -5.4634 0.4821 20 6 7.0356 -6.6155 2.0460 21 6 8.2543 -5.9426 2.6808 22 1 8.1020 -5.4058 3.6171 23 6 9.5850 -6.6351 2.5372 24 6 9.7242 -7.7412 1.7130 25 6 10.9613 -8.3473 1.6024 26 7 11.9985 -7.8914 2.2771 27 6 11.9017 -6.8454 3.0743 28 6 10.6979 -6.1847 3.2306 29 6 5.5024 -2.2594 0.6085 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3622 0.0014 32 1 4.8272 -2.2510 -2.0193 33 1 3.2714 -3.1037 -1.8790 34 1 4.4397 -5.0362 -0.8310 35 1 5.0780 -4.6884 -2.4561 36 1 6.8864 -5.0963 -0.7491 37 1 6.9820 -3.4805 -1.4955 38 1 6.0814 -6.5215 2.5644 39 1 7.1961 -7.5590 1.5244 40 1 8.8775 -8.1219 1.1610 41 1 11.0793 -9.2065 0.9587 42 1 12.7733 -6.5010 3.6113 43 1 10.6252 -5.3284 3.8847 44 1 6.0164 -1.4597 0.0751 45 1 5.4047 -1.9928 1.6608 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999194246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:22 Heat of formation + Delta-G solvation = 20.528123 kcal Electronic energy + Delta-G solvation = -25605.368360 eV Core-core repulsion = 22008.943036 eV Total energy + Delta-G solvation = -3596.425324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.71085 -40.93246 -39.12013 -37.61610 -36.33514 -33.95380 -32.94205 -32.93655 -32.07054 -30.69273 -27.13369 -25.94275 -25.46979 -24.50452 -23.90632 -23.35959 -21.93312 -21.41406 -20.07116 -19.47851 -18.82067 -17.56611 -17.34712 -16.88821 -16.64636 -16.40324 -16.32272 -15.78920 -15.36360 -15.25535 -14.95469 -14.82721 -14.76365 -14.66022 -14.42212 -14.04872 -13.92537 -13.48789 -13.12657 -12.97245 -12.94726 -12.57078 -12.49327 -12.18692 -12.07004 -11.99010 -11.83192 -11.78252 -11.72651 -11.58979 -10.97234 -10.88338 -10.41346 -10.24653 -10.05399 -9.73574 -9.34101 -8.05416 -5.40117 0.21562 0.23819 1.35977 1.39367 1.41331 1.46463 1.85656 2.45699 2.67443 3.03314 3.25133 3.26929 3.53515 3.55691 3.63397 3.72514 3.79071 3.93657 3.99668 4.08461 4.12321 4.17441 4.20301 4.24784 4.29579 4.32368 4.58325 4.63137 4.72936 4.78826 4.79645 4.84464 4.91453 4.95419 4.97818 5.04790 5.14338 5.15570 5.38732 5.42972 5.44928 5.52221 5.73651 5.80466 6.17679 6.38654 7.02632 7.06539 7.09809 7.77489 7.97028 9.15842 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029213 B = 0.002504 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.245386 B =11178.300750 C =11542.682756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.063 4.063 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.255 1.255 7 C -0.229 4.229 8 H 0.055 0.945 9 N -0.750 5.750 10 C 0.170 3.830 11 H 0.031 0.969 12 C -0.131 4.131 13 C -0.124 4.124 14 C 0.105 3.895 15 N -0.600 5.600 16 C 0.534 3.466 17 O -0.590 6.590 18 C -0.168 4.168 19 H 0.158 0.842 20 C -0.122 4.122 21 C -0.096 4.096 22 H 0.108 0.892 23 C -0.014 4.014 24 C -0.167 4.167 25 C 0.092 3.908 26 N -0.518 5.518 27 C 0.091 3.909 28 C -0.175 4.175 29 C 0.114 3.886 30 H 0.258 0.742 31 H 0.366 0.634 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.146 0.854 40 H 0.165 0.835 41 H 0.180 0.820 42 H 0.172 0.828 43 H 0.140 0.860 44 H 0.078 0.922 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.887 -18.298 -1.330 30.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.179 1.179 7 C -0.360 4.360 8 H 0.073 0.927 9 N -0.394 5.394 10 C 0.062 3.938 11 H 0.049 0.951 12 C -0.171 4.171 13 C -0.163 4.163 14 C -0.016 4.016 15 N -0.331 5.331 16 C 0.324 3.676 17 O -0.471 6.471 18 C -0.189 4.189 19 H 0.175 0.825 20 C -0.159 4.159 21 C -0.115 4.115 22 H 0.126 0.874 23 C -0.022 4.022 24 C -0.186 4.186 25 C -0.064 4.064 26 N -0.227 5.227 27 C -0.065 4.065 28 C -0.195 4.195 29 C -0.010 4.010 30 H 0.067 0.933 31 H 0.199 0.801 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.139 0.861 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.164 0.836 40 H 0.182 0.818 41 H 0.197 0.803 42 H 0.189 0.811 43 H 0.158 0.842 44 H 0.096 0.904 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 25.425 -18.521 -0.852 31.468 hybrid contribution -1.302 2.126 0.443 2.532 sum 24.123 -16.395 -0.409 29.170 Atomic orbital electron populations 1.69879 1.07105 1.26727 1.59560 1.25507 0.96140 1.01276 1.02574 0.85404 0.78525 0.79560 0.78259 1.19935 1.22376 1.17936 1.18934 0.82296 0.93343 1.41387 0.92737 1.42660 1.02599 1.03660 1.90455 1.20606 0.90476 0.87206 0.95547 0.95129 1.22077 1.00132 0.97786 0.97109 1.21887 0.95337 0.96228 1.02813 1.22154 0.97693 1.00219 0.81573 1.48089 1.50999 1.24648 1.09392 1.20317 0.78676 0.85601 0.82990 1.90686 1.62985 1.65465 1.27978 1.22339 1.04234 0.92221 1.00101 0.82496 1.23296 0.96559 0.95157 1.00875 1.20965 0.91338 1.02280 0.96909 0.87436 1.19571 0.93167 0.94442 0.95002 1.22321 1.00228 0.96064 1.00014 1.23236 0.87985 0.99097 0.96077 1.67703 1.33989 1.13273 1.07761 1.23058 0.97659 0.91000 0.94818 1.22199 0.93609 1.02038 1.01638 1.21629 0.91336 0.86598 1.01453 0.93291 0.80089 0.91589 0.93900 0.92140 0.87817 0.86120 0.89475 0.88637 0.83618 0.81755 0.80264 0.81117 0.84241 0.90416 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.37 13.97 21.65 0.30 -63.07 16 2 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.96 45.79 27.74 68.60 1.90 47.69 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.25 -11.14 6.52 99.48 0.65 -10.49 16 7 C -0.23 -13.12 10.41 84.03 0.87 -12.24 16 8 H 0.05 3.45 8.06 -2.91 -0.02 3.42 16 9 N -0.75 -35.14 4.93 -322.59 -1.59 -36.73 16 10 C 0.17 6.43 2.92 45.07 0.13 6.56 16 11 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 12 C -0.13 -3.99 5.47 30.62 0.17 -3.83 16 13 C -0.12 -2.44 6.08 30.67 0.19 -2.26 16 14 C 0.10 1.67 6.30 86.35 0.54 2.22 16 15 N -0.60 -15.05 2.97 -818.74 -2.43 -17.48 16 16 C 0.53 14.14 7.48 87.65 0.66 14.79 16 17 O -0.59 -21.38 15.67 -3.04 -0.05 -21.42 16 18 C -0.17 -2.69 4.61 -11.54 -0.05 -2.74 16 19 H 0.16 1.55 6.82 -2.39 -0.02 1.53 16 20 C -0.12 -1.55 9.59 30.60 0.29 -1.25 16 21 C -0.10 -1.58 5.59 -11.54 -0.06 -1.64 16 22 H 0.11 2.31 7.67 -2.39 -0.02 2.29 16 23 C -0.01 -0.20 5.64 -19.67 -0.11 -0.31 16 24 C -0.17 -1.76 9.39 22.36 0.21 -1.55 16 25 C 0.09 1.13 11.18 84.68 0.95 2.08 16 26 N -0.52 -8.84 10.36 -195.84 -2.03 -10.86 16 27 C 0.09 1.37 11.18 84.68 0.95 2.32 16 28 C -0.18 -2.66 9.84 22.36 0.22 -2.44 16 29 C 0.11 3.70 5.90 86.36 0.51 4.21 16 30 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.37 16.39 5.66 -92.71 -0.52 15.86 16 32 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.12 1.07 5.68 -2.39 -0.01 1.06 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.15 0.79 6.25 -2.39 -0.01 0.78 16 40 H 0.17 0.70 6.16 -2.91 -0.02 0.68 16 41 H 0.18 1.15 8.06 -2.91 -0.02 1.12 16 42 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 44 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.06 2.48 7.01 -2.39 -0.02 2.46 16 Total: -1.00 -79.57 364.32 2.45 -77.12 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.42 Total: 24.14 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 5.93 Total: 0.61 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -5.75 Total: -128.15 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.05 Total: -21.42 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.69 kcal Total: -79.57 2.45 -77.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999194246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.650 kcal (2) G-P(sol) polarization free energy of solvation -79.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds