Wall clock time and date at job start Tue Mar 31 2020 10:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00476 * 2 1 4 4 H 1.48499 * 109.47063 * 270.27904 * 3 2 1 5 5 H 1.48504 * 109.46700 * 30.27492 * 3 2 1 6 6 H 1.48498 * 109.47312 * 150.27242 * 3 2 1 7 7 C 1.38819 * 119.99562 * 180.27272 * 2 1 3 8 8 H 1.07998 * 120.00107 * 359.72809 * 7 2 1 9 9 N 1.36939 * 119.99747 * 179.72390 * 7 2 1 10 10 C 1.46502 * 119.99792 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.49813 * 34.93588 * 10 9 7 12 12 C 1.53043 * 109.49632 * 155.00083 * 10 9 7 13 13 C 1.53039 * 109.53815 * 181.31732 * 12 10 9 14 14 C 1.53193 * 109.30922 * 298.63879 * 13 12 10 15 15 N 1.46925 * 108.78308 * 54.63477 * 14 13 12 16 16 C 1.34771 * 120.63135 * 126.41102 * 15 14 13 17 17 O 1.21557 * 119.99964 * 175.97963 * 16 15 14 18 18 C 1.47837 * 120.00086 * 355.97686 * 16 15 14 19 19 C 1.40028 * 120.55780 * 54.54358 * 18 16 15 20 20 C 1.38358 * 118.28664 * 179.97438 * 19 18 16 21 21 C 1.38355 * 119.30420 * 359.97438 * 20 19 18 22 22 N 1.31928 * 121.07830 * 0.02562 * 21 20 19 23 23 C 1.31696 * 121.87882 * 359.67870 * 22 21 20 24 24 C 1.50701 * 119.71532 * 180.29128 * 23 22 21 25 25 C 1.53005 * 117.49716 * 13.68897 * 24 23 22 26 26 C 1.53001 * 117.49760 * 305.03422 * 24 23 22 27 27 C 1.46930 * 118.73314 * 306.39327 * 15 14 13 28 28 H 0.97004 * 119.99570 * 359.72840 * 1 2 3 29 29 H 0.97003 * 119.99891 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.45830 * 301.34113 * 12 10 9 31 31 H 1.08998 * 109.45570 * 61.31010 * 12 10 9 32 32 H 1.09003 * 109.49778 * 58.58443 * 13 12 10 33 33 H 1.08991 * 109.49614 * 178.68753 * 13 12 10 34 34 H 1.08998 * 109.58677 * 174.42625 * 14 13 12 35 35 H 1.09008 * 109.58713 * 294.84285 * 14 13 12 36 36 H 1.07993 * 120.85556 * 359.95226 * 19 18 16 37 37 H 1.07998 * 120.34276 * 179.97438 * 20 19 18 38 38 H 1.07993 * 119.45941 * 180.02562 * 21 20 19 39 39 H 1.09000 * 115.55066 * 159.36491 * 24 23 22 40 40 H 1.08992 * 117.50158 * 0.02562 * 25 24 23 41 41 H 1.09003 * 117.49519 * 145.02154 * 25 24 23 42 42 H 1.09004 * 117.49980 * 214.98440 * 26 24 23 43 43 H 1.09003 * 117.49942 * 359.97438 * 26 24 23 44 44 H 1.09003 * 109.58380 * 293.81604 * 27 15 14 45 45 H 1.09001 * 109.58151 * 173.39624 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4919 2.0497 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4383 0.6942 7 6 2.0102 -1.2022 -0.0057 8 1 1.4701 -2.1375 -0.0057 9 7 3.3796 -1.2023 -0.0114 10 6 4.1120 -2.4711 -0.0180 11 1 3.5619 -3.2056 -0.6062 12 6 5.4972 -2.2580 -0.6329 13 6 6.2508 -3.5894 -0.6704 14 6 6.4311 -4.1099 0.7591 15 7 5.1140 -4.1800 1.4066 16 6 4.6903 -5.3243 1.9788 17 8 3.6311 -5.3499 2.5747 18 6 5.5135 -6.5484 1.8817 19 6 6.8508 -6.5418 2.2971 20 6 7.5777 -7.7137 2.1858 21 6 6.9660 -8.8439 1.6732 22 7 5.7039 -8.8206 1.2896 23 6 4.9692 -7.7314 1.3811 24 6 3.5302 -7.7613 0.9345 25 6 2.8939 -9.1317 0.6929 26 6 3.2433 -8.2298 -0.4935 27 6 4.2681 -2.9788 1.4188 28 1 -0.4850 0.8401 0.0040 29 1 3.8646 -0.3622 -0.0111 30 1 5.3890 -1.8732 -1.6470 31 1 6.0556 -1.5417 -0.0304 32 1 5.6808 -4.3139 -1.2521 33 1 7.2281 -3.4415 -1.1296 34 1 6.8785 -5.1034 0.7326 35 1 7.0766 -3.4310 1.3165 36 1 7.3031 -5.6449 2.6937 37 1 8.6117 -7.7459 2.4958 38 1 7.5309 -9.7601 1.5855 39 1 2.8945 -6.9763 1.3440 40 1 3.5159 -10.0114 0.8573 41 1 1.8394 -9.2480 0.9431 42 1 2.4186 -7.7531 -1.0234 43 1 4.0954 -8.5159 -1.1101 44 1 4.7372 -2.2077 2.0300 45 1 3.2883 -3.2261 1.8275 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999607584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:51 Heat of formation + Delta-G solvation = 24.368481 kcal Electronic energy + Delta-G solvation = -26711.174565 eV Core-core repulsion = 23114.915771 eV Total energy + Delta-G solvation = -3596.258794 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.07304 -40.53503 -38.75766 -37.88000 -36.37972 -34.29545 -33.40150 -32.96392 -32.21964 -30.40907 -27.07701 -25.87072 -25.47867 -24.81684 -23.32101 -23.18746 -22.08170 -21.77351 -20.52293 -19.57750 -18.49137 -18.12162 -17.34443 -17.17796 -16.76421 -16.27876 -16.16129 -15.62873 -15.45197 -15.33801 -15.14831 -14.88281 -14.81892 -14.34842 -14.25913 -13.97428 -13.87580 -13.64801 -13.33097 -12.98879 -12.77507 -12.55053 -12.45375 -12.19494 -11.98483 -11.96427 -11.86386 -11.77106 -11.50031 -11.40883 -11.25997 -11.10493 -10.74372 -10.43618 -9.93090 -9.78278 -9.29606 -8.05924 -5.42532 -0.22740 0.16142 1.35760 1.41613 1.47335 1.50152 1.90752 2.46143 2.52681 3.01974 3.15420 3.24658 3.31670 3.48608 3.57174 3.87060 3.91520 3.93579 4.00552 4.05300 4.08833 4.14330 4.18320 4.23423 4.31511 4.48970 4.54260 4.62750 4.66782 4.68199 4.80899 4.85752 4.91030 4.96878 5.00557 5.06839 5.08751 5.14697 5.22290 5.32651 5.39738 5.42920 5.63798 5.72427 6.17445 6.31386 6.90089 7.00602 7.03935 7.75068 7.97797 9.15935 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.003702 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.246650 B = 7561.601134 C = 8383.319007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.064 4.064 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.245 1.245 7 C -0.240 4.240 8 H 0.043 0.957 9 N -0.742 5.742 10 C 0.170 3.830 11 H 0.028 0.972 12 C -0.121 4.121 13 C -0.122 4.122 14 C 0.095 3.905 15 N -0.595 5.595 16 C 0.557 3.443 17 O -0.583 6.583 18 C -0.188 4.188 19 C -0.043 4.043 20 C -0.164 4.164 21 C 0.118 3.882 22 N -0.501 5.501 23 C 0.193 3.807 24 C -0.158 4.158 25 C -0.139 4.139 26 C -0.149 4.149 27 C 0.106 3.894 28 H 0.259 0.741 29 H 0.371 0.629 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.164 0.836 37 H 0.186 0.814 38 H 0.197 0.803 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.283 -16.675 1.007 30.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.169 1.169 7 C -0.371 4.371 8 H 0.061 0.939 9 N -0.386 5.386 10 C 0.061 3.939 11 H 0.046 0.954 12 C -0.159 4.159 13 C -0.161 4.161 14 C -0.026 4.026 15 N -0.326 5.326 16 C 0.346 3.654 17 O -0.464 6.464 18 C -0.194 4.194 19 C -0.069 4.069 20 C -0.183 4.183 21 C -0.039 4.039 22 N -0.210 5.210 23 C 0.057 3.943 24 C -0.177 4.177 25 C -0.177 4.177 26 C -0.187 4.187 27 C -0.020 4.020 28 H 0.068 0.932 29 H 0.206 0.794 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.181 0.819 37 H 0.204 0.796 38 H 0.214 0.786 39 H 0.116 0.884 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 24.145 -17.495 0.955 29.833 hybrid contribution -0.668 2.063 0.560 2.240 sum 23.477 -15.432 1.515 28.136 Atomic orbital electron populations 1.69921 1.07501 1.26925 1.59136 1.25626 0.96177 1.01711 1.01980 0.85293 0.78713 0.78675 0.78347 1.19925 1.22371 1.16909 1.18951 0.82745 0.93133 1.42234 0.93882 1.42631 1.02308 1.03682 1.89945 1.20617 0.93263 0.87039 0.92970 0.95416 1.21799 0.93581 0.98918 1.01575 1.21870 1.02223 0.95735 0.96225 1.22331 0.82487 1.04050 0.93715 1.48210 1.19413 1.10003 1.54995 1.18683 0.84964 0.83641 0.78127 1.90768 1.25693 1.85384 1.44557 1.20524 0.96784 0.94091 1.07976 1.22043 0.90262 1.00882 0.93666 1.22513 1.03342 0.91964 1.00506 1.23661 0.89465 1.00099 0.90718 1.67443 1.08338 1.27222 1.17965 1.20209 0.94043 0.87673 0.92422 1.21167 0.92544 1.01572 1.02454 1.22966 1.01352 0.92579 1.00755 1.22970 1.03584 1.02775 0.89333 1.22250 0.94140 0.85697 0.99881 0.93211 0.79442 0.91148 0.90039 0.92777 0.86564 0.87761 0.88188 0.81863 0.79629 0.78633 0.88400 0.86781 0.88015 0.88428 0.87711 0.90846 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.04 13.97 21.65 0.30 -64.74 16 2 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.96 45.38 27.74 68.60 1.90 47.28 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.24 -10.12 6.52 99.48 0.65 -9.47 16 7 C -0.24 -14.18 10.41 84.03 0.88 -13.31 16 8 H 0.04 2.90 8.06 -2.91 -0.02 2.87 16 9 N -0.74 -34.78 4.93 -322.56 -1.59 -36.37 16 10 C 0.17 6.55 2.92 45.07 0.13 6.68 16 11 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 12 C -0.12 -3.14 5.35 30.62 0.16 -2.98 16 13 C -0.12 -2.31 6.08 30.67 0.19 -2.12 16 14 C 0.10 1.75 5.59 86.36 0.48 2.23 16 15 N -0.59 -17.75 2.97 -822.31 -2.44 -20.20 16 16 C 0.56 18.89 6.58 86.78 0.57 19.46 16 17 O -0.58 -25.89 14.68 -3.89 -0.06 -25.95 16 18 C -0.19 -4.87 4.87 -19.99 -0.10 -4.96 16 19 C -0.04 -0.67 7.59 22.73 0.17 -0.50 16 20 C -0.16 -1.64 10.10 22.33 0.23 -1.41 16 21 C 0.12 1.56 11.17 84.71 0.95 2.51 16 22 N -0.50 -10.93 9.37 -182.85 -1.71 -12.65 16 23 C 0.19 5.23 6.47 42.89 0.28 5.50 16 24 C -0.16 -4.77 5.56 -11.54 -0.06 -4.83 16 25 C -0.14 -3.38 10.02 30.62 0.31 -3.08 16 26 C -0.15 -3.74 10.23 30.62 0.31 -3.43 16 27 C 0.11 3.99 6.01 86.36 0.52 4.51 16 28 H 0.26 16.18 8.31 -92.70 -0.77 15.41 16 29 H 0.37 16.04 5.66 -92.71 -0.52 15.51 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.12 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.52 4.76 -2.39 -0.01 1.51 16 35 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.16 1.76 7.46 -2.91 -0.02 1.74 16 37 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 38 H 0.20 1.05 8.06 -2.91 -0.02 1.02 16 39 H 0.10 3.71 5.99 -2.39 -0.01 3.70 16 40 H 0.11 2.55 7.62 -2.39 -0.02 2.53 16 41 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.10 2.38 8.14 -2.39 -0.02 2.37 16 44 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.04 2.12 7.03 -2.39 -0.02 2.10 16 Total: -1.00 -83.77 361.19 2.30 -81.48 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.42 Total: 30.22 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.48 Total: 0.91 kcal Atomic # 7 Polarization: -128.50 SS G_CDS: -5.44 Total: -133.95 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.06 Total: -25.95 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.90 Total: 47.28 kcal Total: -83.77 2.30 -81.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999607584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.845 kcal (2) G-P(sol) polarization free energy of solvation -83.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds