Wall clock time and date at job start Tue Mar 31 2020 10:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00167 * 2 1 4 4 H 1.48497 * 109.46815 * 270.00202 * 3 2 1 5 5 H 1.48501 * 109.46963 * 29.99603 * 3 2 1 6 6 H 1.48497 * 109.47368 * 149.99855 * 3 2 1 7 7 C 1.38818 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99276 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00098 * 180.02562 * 9 7 2 11 11 H 1.09010 * 109.49332 * 324.93362 * 10 9 7 12 12 C 1.53035 * 109.50050 * 84.99727 * 10 9 7 13 13 C 1.53043 * 109.53056 * 181.36145 * 12 10 9 14 14 C 1.53199 * 109.30675 * 298.61375 * 13 12 10 15 15 N 1.46930 * 108.76527 * 54.65823 * 14 13 12 16 16 C 1.34773 * 120.63419 * 126.40074 * 15 14 13 17 17 O 1.21273 * 120.00166 * 175.26421 * 16 15 14 18 18 C 1.50705 * 119.99652 * 355.26945 * 16 15 14 19 19 C 1.50697 * 115.54875 * 295.97338 * 18 16 15 20 20 C 1.38676 * 120.41984 * 303.57252 * 19 18 16 21 21 C 1.38621 * 118.42131 * 179.78420 * 20 19 18 22 22 C 1.38234 * 119.16065 * 0.47040 * 21 20 19 23 23 N 1.31845 * 120.76270 * 359.77053 * 22 21 20 24 24 C 1.31890 * 121.72678 * 359.97438 * 23 22 21 25 25 C 1.53004 * 117.49624 * 150.30651 * 18 16 15 26 26 C 1.52996 * 117.50007 * 81.64597 * 18 16 15 27 27 C 1.46927 * 118.73746 * 306.37841 * 15 14 13 28 28 H 0.97001 * 119.99898 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00704 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46080 * 301.37290 * 12 10 9 31 31 H 1.08999 * 109.46107 * 61.34542 * 12 10 9 32 32 H 1.08999 * 109.49455 * 58.57537 * 13 12 10 33 33 H 1.09001 * 109.50077 * 178.67973 * 13 12 10 34 34 H 1.08999 * 109.59940 * 294.86746 * 14 13 12 35 35 H 1.08999 * 109.58293 * 174.43259 * 14 13 12 36 36 H 1.08000 * 120.78876 * 0.02562 * 20 19 18 37 37 H 1.08003 * 120.42373 * 180.26586 * 21 20 19 38 38 H 1.08005 * 119.61585 * 179.74946 * 22 21 20 39 39 H 1.08003 * 119.61384 * 179.97438 * 24 23 22 40 40 H 1.08990 * 117.49914 * 359.97438 * 25 18 16 41 41 H 1.09005 * 117.49593 * 145.02258 * 25 18 16 42 42 H 1.09001 * 117.50132 * 214.97879 * 26 18 16 43 43 H 1.09005 * 117.50188 * 359.97438 * 26 18 16 44 44 H 1.08993 * 109.58861 * 293.82585 * 27 15 14 45 45 H 1.08996 * 109.70751 * 173.46656 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0027 11 1 2.9683 -3.5519 -0.5878 12 6 2.4224 -4.0351 1.4401 13 6 3.2169 -5.3431 1.4393 14 6 2.3512 -6.4612 0.8500 15 7 1.8769 -6.0427 -0.4762 16 6 2.0774 -6.8245 -1.5555 17 8 1.6070 -6.5098 -2.6280 18 6 2.8861 -8.0899 -1.4295 19 6 4.3346 -7.9013 -1.0588 20 6 5.1596 -7.1015 -1.8351 21 6 6.4840 -6.9532 -1.4535 22 6 6.9375 -7.6109 -0.3253 23 7 6.1255 -8.3676 0.3863 24 6 4.8587 -8.5275 0.0559 25 6 2.5428 -9.2446 -2.3728 26 6 2.1747 -9.3322 -0.8896 27 6 1.1794 -4.7558 -0.6032 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 0.0023 30 1 3.0272 -3.2432 1.8819 31 1 1.5109 -4.1643 2.0238 32 1 4.1161 -5.2221 0.8351 33 1 3.4963 -5.5998 2.4611 34 1 1.4975 -6.6449 1.5022 35 1 2.9441 -7.3710 0.7556 36 1 4.7784 -6.6027 -2.7139 37 1 7.1539 -6.3344 -2.0320 38 1 7.9690 -7.5038 -0.0236 39 1 4.2239 -9.1557 0.6632 40 1 1.7318 -9.0891 -3.0842 41 1 3.3647 -9.8681 -2.7250 42 1 2.7544 -10.0133 -0.2666 43 1 1.1218 -9.2342 -0.6251 44 1 0.2302 -4.8004 -0.0695 45 1 0.9969 -4.5390 -1.6557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999975924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:55 Heat of formation + Delta-G solvation = 43.478050 kcal Electronic energy + Delta-G solvation = -26991.311033 eV Core-core repulsion = 23395.880892 eV Total energy + Delta-G solvation = -3595.430141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.15040 -39.70209 -37.78351 -36.55202 -34.47245 -32.60988 -32.17207 -31.34042 -31.06507 -28.48197 -26.05836 -24.59141 -24.07804 -23.78377 -22.44065 -22.17200 -21.97844 -19.85694 -18.75226 -17.71395 -17.21193 -16.98111 -16.27801 -16.00678 -15.67489 -14.92384 -14.74958 -14.40004 -14.25372 -14.12130 -13.87211 -13.50735 -13.49846 -13.24526 -13.01706 -12.86088 -12.60259 -12.29024 -12.14551 -11.75899 -11.27307 -11.09088 -10.95824 -10.92260 -10.81475 -10.63787 -10.43341 -10.38030 -10.14192 -10.06240 -9.87382 -9.71900 -9.50191 -9.05992 -8.93339 -8.43587 -7.01088 -5.79632 -3.09326 0.81598 1.05508 2.53072 2.98760 3.34566 3.42089 3.47282 3.48692 3.64063 4.06139 4.30765 4.34114 4.51979 4.57091 4.60151 4.75481 4.77165 4.97704 5.00032 5.16530 5.17158 5.26819 5.30785 5.40631 5.50751 5.51744 5.54740 5.59911 5.69906 5.74721 5.80188 5.82046 5.92035 6.01638 6.04582 6.12494 6.22494 6.37290 6.42821 6.52610 6.67946 6.85400 7.01853 7.52670 7.67218 7.71419 8.23064 8.38314 9.49522 10.04398 10.39761 11.42855 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.003777 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.347573 B = 7412.163222 C = 8118.581328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.170 3.830 11 H 0.048 0.952 12 C -0.136 4.136 13 C -0.130 4.130 14 C 0.106 3.894 15 N -0.594 5.594 16 C 0.552 3.448 17 O -0.536 6.536 18 C -0.119 4.119 19 C -0.092 4.092 20 C -0.059 4.059 21 C -0.165 4.165 22 C 0.096 3.904 23 N -0.480 5.480 24 C 0.104 3.896 25 C -0.132 4.132 26 C -0.157 4.157 27 C 0.106 3.894 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.066 0.934 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.461 -21.569 0.303 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.059 3.941 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.169 4.169 14 C -0.017 4.017 15 N -0.326 5.326 16 C 0.339 3.661 17 O -0.413 6.413 18 C -0.123 4.123 19 C -0.094 4.094 20 C -0.085 4.085 21 C -0.185 4.185 22 C -0.061 4.061 23 N -0.188 5.188 24 C -0.054 4.054 25 C -0.169 4.169 26 C -0.194 4.194 27 C -0.017 4.017 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.084 0.916 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.643 -21.638 0.472 23.694 hybrid contribution -0.099 1.583 -0.598 1.696 sum 9.544 -20.054 -0.126 22.210 Atomic orbital electron populations 1.69662 1.05107 1.25746 1.57428 1.24741 0.95510 0.97674 1.02786 0.86195 0.78647 0.83812 0.77565 1.21659 1.21722 1.20762 1.19191 0.90942 0.83879 1.43036 0.91218 1.42302 1.05798 0.99486 1.88592 1.20453 0.94508 0.85957 0.93181 0.93394 1.22276 0.99579 0.95238 1.00586 1.21893 0.98665 0.96011 1.00369 1.21858 0.98312 0.98014 0.83484 1.47997 1.56817 1.20190 1.07637 1.19235 0.79747 0.83441 0.83706 1.90706 1.50681 1.72618 1.27257 1.19973 0.92165 0.90513 1.09607 1.19742 0.93059 0.99674 0.96935 1.21500 0.93184 0.95132 0.98687 1.22174 0.96391 1.01118 0.98797 1.22794 0.99617 0.92352 0.91340 1.67730 1.04205 1.16335 1.30492 1.22613 0.91809 0.97130 0.93799 1.23071 1.03656 0.97005 0.93183 1.23191 1.01499 0.96973 0.97732 1.22036 0.95103 0.81224 1.03318 0.93440 0.78177 0.91588 0.92424 0.92287 0.91427 0.91357 0.89990 0.84708 0.84501 0.82651 0.82743 0.87188 0.87830 0.87434 0.87618 0.91550 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -18.00 5.12 -53.30 -0.27 -18.27 16 10 C 0.17 3.40 2.92 -67.81 -0.20 3.21 16 11 H 0.05 1.03 8.08 -51.92 -0.42 0.61 16 12 C -0.14 -2.36 5.47 -26.69 -0.15 -2.51 16 13 C -0.13 -1.77 6.08 -26.61 -0.16 -1.93 16 14 C 0.11 1.29 6.11 -3.70 -0.02 1.27 16 15 N -0.59 -8.83 2.97 -172.77 -0.51 -9.35 16 16 C 0.55 8.29 6.75 -10.99 -0.07 8.22 16 17 O -0.54 -10.03 16.10 5.56 0.09 -9.94 16 18 C -0.12 -1.30 1.09 -156.81 -0.17 -1.47 16 19 C -0.09 -0.97 4.30 -104.48 -0.45 -1.42 16 20 C -0.06 -0.65 9.66 -39.28 -0.38 -1.03 16 21 C -0.17 -1.56 10.11 -39.44 -0.40 -1.96 16 22 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 23 N -0.48 -5.17 10.36 -13.25 -0.14 -5.31 16 24 C 0.10 1.01 9.00 -17.55 -0.16 0.86 16 25 C -0.13 -1.21 9.76 -26.69 -0.26 -1.47 16 26 C -0.16 -1.25 9.10 -26.69 -0.24 -1.49 16 27 C 0.11 1.89 5.89 -3.71 -0.02 1.87 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.85 3.67 -51.93 -0.19 0.65 16 36 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 39 H 0.16 1.17 6.39 -52.48 -0.34 0.84 16 40 H 0.11 1.12 7.97 -51.93 -0.41 0.71 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.11 0.62 6.67 -51.93 -0.35 0.28 16 43 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.09 1.86 7.04 -51.93 -0.37 1.49 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -32.75 364.41 -9.35 -42.11 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.59 Total: 9.56 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -3.13 Total: -4.35 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.20 Total: -60.23 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.75 -9.35 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999975924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.584 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds