Wall clock time and date at job start Tue Mar 31 2020 10:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00167 * 2 1 4 4 H 1.48497 * 109.46815 * 270.00202 * 3 2 1 5 5 H 1.48501 * 109.46963 * 29.99603 * 3 2 1 6 6 H 1.48497 * 109.47368 * 149.99855 * 3 2 1 7 7 C 1.38818 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99276 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00098 * 180.02562 * 9 7 2 11 11 H 1.09010 * 109.49332 * 324.93362 * 10 9 7 12 12 C 1.53035 * 109.50050 * 84.99727 * 10 9 7 13 13 C 1.53043 * 109.53056 * 181.36145 * 12 10 9 14 14 C 1.53199 * 109.30675 * 298.61375 * 13 12 10 15 15 N 1.46930 * 108.76527 * 54.65823 * 14 13 12 16 16 C 1.34773 * 120.63419 * 126.40074 * 15 14 13 17 17 O 1.21273 * 120.00166 * 175.26421 * 16 15 14 18 18 C 1.50705 * 119.99652 * 355.26945 * 16 15 14 19 19 C 1.50697 * 115.54875 * 295.97338 * 18 16 15 20 20 C 1.38676 * 120.41984 * 303.57252 * 19 18 16 21 21 C 1.38621 * 118.42131 * 179.78420 * 20 19 18 22 22 C 1.38234 * 119.16065 * 0.47040 * 21 20 19 23 23 N 1.31845 * 120.76270 * 359.77053 * 22 21 20 24 24 C 1.31890 * 121.72678 * 359.97438 * 23 22 21 25 25 C 1.53004 * 117.49624 * 150.30651 * 18 16 15 26 26 C 1.52996 * 117.50007 * 81.64597 * 18 16 15 27 27 C 1.46927 * 118.73746 * 306.37841 * 15 14 13 28 28 H 0.97001 * 119.99898 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00704 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46080 * 301.37290 * 12 10 9 31 31 H 1.08999 * 109.46107 * 61.34542 * 12 10 9 32 32 H 1.08999 * 109.49455 * 58.57537 * 13 12 10 33 33 H 1.09001 * 109.50077 * 178.67973 * 13 12 10 34 34 H 1.08999 * 109.59940 * 294.86746 * 14 13 12 35 35 H 1.08999 * 109.58293 * 174.43259 * 14 13 12 36 36 H 1.08000 * 120.78876 * 0.02562 * 20 19 18 37 37 H 1.08003 * 120.42373 * 180.26586 * 21 20 19 38 38 H 1.08005 * 119.61585 * 179.74946 * 22 21 20 39 39 H 1.08003 * 119.61384 * 179.97438 * 24 23 22 40 40 H 1.08990 * 117.49914 * 359.97438 * 25 18 16 41 41 H 1.09005 * 117.49593 * 145.02258 * 25 18 16 42 42 H 1.09001 * 117.50132 * 214.97879 * 26 18 16 43 43 H 1.09005 * 117.50188 * 359.97438 * 26 18 16 44 44 H 1.08993 * 109.58861 * 293.82585 * 27 15 14 45 45 H 1.08996 * 109.70751 * 173.46656 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0027 11 1 2.9683 -3.5519 -0.5878 12 6 2.4224 -4.0351 1.4401 13 6 3.2169 -5.3431 1.4393 14 6 2.3512 -6.4612 0.8500 15 7 1.8769 -6.0427 -0.4762 16 6 2.0774 -6.8245 -1.5555 17 8 1.6070 -6.5098 -2.6280 18 6 2.8861 -8.0899 -1.4295 19 6 4.3346 -7.9013 -1.0588 20 6 5.1596 -7.1015 -1.8351 21 6 6.4840 -6.9532 -1.4535 22 6 6.9375 -7.6109 -0.3253 23 7 6.1255 -8.3676 0.3863 24 6 4.8587 -8.5275 0.0559 25 6 2.5428 -9.2446 -2.3728 26 6 2.1747 -9.3322 -0.8896 27 6 1.1794 -4.7558 -0.6032 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 0.0023 30 1 3.0272 -3.2432 1.8819 31 1 1.5109 -4.1643 2.0238 32 1 4.1161 -5.2221 0.8351 33 1 3.4963 -5.5998 2.4611 34 1 1.4975 -6.6449 1.5022 35 1 2.9441 -7.3710 0.7556 36 1 4.7784 -6.6027 -2.7139 37 1 7.1539 -6.3344 -2.0320 38 1 7.9690 -7.5038 -0.0236 39 1 4.2239 -9.1557 0.6632 40 1 1.7318 -9.0891 -3.0842 41 1 3.3647 -9.8681 -2.7250 42 1 2.7544 -10.0133 -0.2666 43 1 1.1218 -9.2342 -0.6251 44 1 0.2302 -4.8004 -0.0695 45 1 0.9969 -4.5390 -1.6557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999975924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:54 Heat of formation + Delta-G solvation = 22.847551 kcal Electronic energy + Delta-G solvation = -26992.205638 eV Core-core repulsion = 23395.880892 eV Total energy + Delta-G solvation = -3596.324746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.08592 -40.69650 -39.04254 -37.57179 -36.22876 -33.83768 -33.35498 -32.83900 -31.87686 -30.22584 -27.20453 -26.07671 -25.21640 -24.78735 -23.45515 -23.26855 -23.04392 -21.28079 -19.91031 -19.19742 -18.59853 -17.89060 -17.21430 -17.05909 -16.85974 -16.46388 -15.80258 -15.73777 -15.45766 -15.29731 -15.11969 -14.92017 -14.75448 -14.55108 -14.06207 -13.91688 -13.85692 -13.63719 -12.97567 -12.95530 -12.89947 -12.41992 -12.41409 -12.27369 -12.16962 -11.93843 -11.87261 -11.77574 -11.68978 -11.65076 -11.05951 -10.95396 -10.70715 -10.33815 -9.84385 -9.75168 -9.07190 -7.98569 -5.28518 0.08070 0.27771 1.39878 1.44595 1.46257 1.54412 1.83299 2.52973 2.58221 2.87920 3.30923 3.33990 3.39002 3.65069 3.73521 3.79808 3.85661 3.95438 3.96355 4.01947 4.05428 4.06349 4.23374 4.28784 4.30385 4.48159 4.52473 4.65876 4.68873 4.71132 4.77715 4.80520 4.87380 4.92914 4.99115 5.07878 5.14860 5.16525 5.28248 5.32636 5.37801 5.45787 5.52675 5.71490 6.22713 6.34754 6.98677 7.04152 7.28983 8.00471 8.25831 9.24666 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.003777 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.347573 B = 7412.163222 C = 8118.581328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.171 3.829 11 H 0.027 0.973 12 C -0.125 4.125 13 C -0.120 4.120 14 C 0.106 3.894 15 N -0.594 5.594 16 C 0.548 3.452 17 O -0.584 6.584 18 C -0.132 4.132 19 C -0.095 4.095 20 C -0.081 4.081 21 C -0.167 4.167 22 C 0.094 3.906 23 N -0.494 5.494 24 C 0.107 3.893 25 C -0.134 4.134 26 C -0.129 4.129 27 C 0.118 3.882 28 H 0.252 0.748 29 H 0.374 0.626 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.153 0.847 38 H 0.181 0.819 39 H 0.183 0.817 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.141 0.859 43 H 0.109 0.891 44 H 0.072 0.928 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.214 -23.943 2.151 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.800 3.200 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.061 3.939 11 H 0.045 0.955 12 C -0.166 4.166 13 C -0.158 4.158 14 C -0.016 4.016 15 N -0.325 5.325 16 C 0.337 3.663 17 O -0.464 6.464 18 C -0.136 4.136 19 C -0.097 4.097 20 C -0.107 4.107 21 C -0.186 4.186 22 C -0.063 4.063 23 N -0.202 5.202 24 C -0.050 4.050 25 C -0.171 4.171 26 C -0.165 4.165 27 C -0.006 4.006 28 H 0.061 0.939 29 H 0.206 0.794 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.171 0.829 38 H 0.198 0.802 39 H 0.200 0.800 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.159 0.841 43 H 0.127 0.873 44 H 0.090 0.910 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.446 -24.065 2.346 26.752 hybrid contribution -0.603 2.275 -1.236 2.658 sum 10.843 -21.791 1.110 24.365 Atomic orbital electron populations 1.69813 1.06562 1.26166 1.59198 1.25536 0.96368 1.00960 1.03445 0.85170 0.77813 0.79579 0.77391 1.21601 1.21872 1.19370 1.19510 0.91186 0.85055 1.41570 0.91090 1.42462 1.05463 1.00651 1.88871 1.20570 0.93451 0.84879 0.94965 0.95517 1.22056 0.99948 0.96889 0.97676 1.21818 0.97714 0.94131 1.02179 1.22102 0.99209 0.98262 0.81983 1.48052 1.56462 1.18850 1.09127 1.20002 0.79155 0.84436 0.82719 1.90678 1.52655 1.74019 1.29038 1.19795 0.92099 0.89132 1.12583 1.19705 0.92517 1.00105 0.97379 1.21567 0.94355 0.96019 0.98758 1.22375 0.95952 1.01204 0.99111 1.23224 1.00672 0.91530 0.90845 1.67807 1.04680 1.16792 1.30922 1.22969 0.91868 0.96870 0.93317 1.23134 1.03781 0.96226 0.94005 1.23407 1.01824 0.94430 0.96882 1.21610 0.95267 0.82502 1.01190 0.93898 0.79379 0.93620 0.92129 0.93276 0.88372 0.89273 0.87324 0.86576 0.82932 0.80202 0.80035 0.88854 0.86120 0.84072 0.87281 0.90971 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.67 13.06 21.65 0.28 -59.39 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 3 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.24 -13.67 9.93 84.04 0.83 -12.83 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.73 -37.93 5.12 -322.56 -1.65 -39.59 16 10 C 0.17 7.03 2.92 45.07 0.13 7.16 16 11 H 0.03 1.20 8.08 -2.38 -0.02 1.18 16 12 C -0.13 -4.28 5.47 30.62 0.17 -4.12 16 13 C -0.12 -2.96 6.08 30.68 0.19 -2.78 16 14 C 0.11 2.27 6.11 86.36 0.53 2.80 16 15 N -0.59 -17.35 2.97 -818.90 -2.43 -19.78 16 16 C 0.55 16.46 6.75 87.66 0.59 17.06 16 17 O -0.58 -22.90 16.10 -3.01 -0.05 -22.95 16 18 C -0.13 -2.66 1.09 -53.67 -0.06 -2.72 16 19 C -0.09 -1.81 4.30 -19.78 -0.08 -1.89 16 20 C -0.08 -1.74 9.66 22.47 0.22 -1.52 16 21 C -0.17 -2.92 10.11 22.36 0.23 -2.69 16 22 C 0.09 1.52 11.18 84.69 0.95 2.47 16 23 N -0.49 -9.00 10.36 -195.84 -2.03 -11.03 16 24 C 0.11 1.70 9.00 84.67 0.76 2.46 16 25 C -0.13 -2.24 9.76 30.62 0.30 -1.94 16 26 C -0.13 -1.59 9.10 30.62 0.28 -1.31 16 27 C 0.12 4.36 5.89 86.36 0.51 4.87 16 28 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.37 20.59 7.80 -92.71 -0.72 19.87 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.11 1.80 3.67 -2.39 -0.01 1.80 16 36 H 0.12 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 39 H 0.18 1.77 6.39 -2.91 -0.02 1.75 16 40 H 0.09 1.89 7.97 -2.39 -0.02 1.87 16 41 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.14 0.84 6.67 -2.39 -0.02 0.82 16 43 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.06 2.65 7.04 -2.39 -0.02 2.63 16 Total: -1.00 -74.09 364.41 2.43 -71.66 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.28 Total: 31.02 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 6.00 Total: 1.38 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -5.83 Total: -129.78 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.05 Total: -22.95 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -74.09 2.43 -71.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999975924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.507 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds