Wall clock time and date at job start Tue Mar 31 2020 11:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00114 * 2 1 4 4 H 1.48501 * 109.47488 * 274.07236 * 3 2 1 5 5 H 1.48502 * 109.46661 * 34.07294 * 3 2 1 6 6 H 1.48495 * 109.47274 * 154.06656 * 3 2 1 7 7 C 1.38820 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99301 * 197.51853 * 7 2 1 9 9 N 1.36927 * 120.00081 * 17.51930 * 7 2 1 10 10 C 1.46925 * 120.63534 * 27.94124 * 9 7 2 11 11 C 1.53194 * 108.77112 * 126.41528 * 10 9 7 12 12 C 1.53039 * 109.31279 * 54.64111 * 11 10 9 13 13 C 1.53004 * 109.45791 * 178.60906 * 12 11 10 14 14 N 1.46500 * 115.54953 * 34.41719 * 13 12 11 15 15 C 1.34776 * 119.99720 * 179.97438 * 14 13 12 16 16 O 1.21512 * 120.00216 * 0.02562 * 15 14 13 17 17 C 1.48171 * 119.99852 * 180.02562 * 15 14 13 18 18 C 1.39307 * 119.72282 * 180.02562 * 17 15 14 19 19 C 1.38591 * 119.05825 * 179.97438 * 18 17 15 20 20 C 1.38630 * 118.48847 * 359.97438 * 19 18 17 21 21 C 1.38557 * 119.35060 * 0.02562 * 20 19 18 22 22 N 1.31520 * 120.90381 * 359.74170 * 21 20 19 23 23 C 1.53001 * 117.49869 * 248.74325 * 13 12 11 24 24 C 1.53002 * 117.49466 * 180.08587 * 13 12 11 25 25 C 1.53039 * 109.53836 * 298.63047 * 12 11 10 26 26 C 1.46931 * 120.62894 * 207.97246 * 9 7 2 27 27 H 0.96996 * 120.00010 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58069 * 6.63569 * 10 9 7 29 29 H 1.08998 * 109.59003 * 246.20605 * 10 9 7 30 30 H 1.08998 * 109.49998 * 294.68381 * 11 10 9 31 31 H 1.09005 * 109.49492 * 174.58882 * 11 10 9 32 32 H 1.09006 * 109.45864 * 58.65488 * 12 11 10 33 33 H 0.97001 * 120.00053 * 0.02562 * 14 13 12 34 34 H 1.07993 * 120.47336 * 359.96242 * 18 17 15 35 35 H 1.08002 * 120.75662 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.32094 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.54465 * 180.02562 * 21 20 19 38 38 H 1.08998 * 117.49823 * 0.02562 * 23 13 12 39 39 H 1.09003 * 117.49358 * 145.02427 * 23 13 12 40 40 H 1.09002 * 117.49655 * 214.98048 * 24 13 12 41 41 H 1.09002 * 117.50210 * 359.97438 * 24 13 12 42 42 H 1.09002 * 109.49328 * 181.31687 * 25 12 11 43 43 H 1.08997 * 109.49711 * 301.38306 * 25 12 11 44 44 H 1.09001 * 109.58574 * 113.79627 * 26 9 7 45 45 H 1.08997 * 109.58825 * 353.36845 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4116 2.0962 -1.3965 5 1 1.4933 2.6262 0.7844 6 1 3.5880 1.4169 0.6123 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2239 0.2810 9 7 1.3733 -2.3604 -0.3580 10 6 0.2346 -2.3328 -1.2862 11 6 0.5137 -3.3038 -2.4378 12 6 0.8262 -4.6891 -1.8674 13 6 1.0715 -5.6697 -3.0159 14 7 1.7261 -5.1061 -4.1991 15 6 1.9857 -5.8908 -5.2636 16 8 1.6764 -7.0657 -5.2422 17 6 2.6483 -5.3208 -6.4601 18 6 2.9135 -6.1371 -7.5574 19 6 3.5333 -5.5895 -8.6695 20 6 3.8660 -4.2439 -8.6456 21 6 3.5722 -3.4916 -7.5198 22 7 2.9792 -4.0357 -6.4796 23 6 0.0314 -6.7692 -3.2404 24 6 1.3997 -7.1186 -2.6497 25 6 2.0764 -4.6105 -0.9882 26 6 1.8150 -3.6544 0.1798 27 1 -0.4850 0.8400 0.0004 28 1 0.1092 -1.3245 -1.6807 29 1 -0.6713 -2.6379 -0.7624 30 1 1.3665 -2.9474 -3.0156 31 1 -0.3631 -3.3651 -3.0825 32 1 -0.0173 -5.0342 -1.2693 33 1 1.9733 -4.1682 -4.2161 34 1 2.6401 -7.1817 -7.5417 35 1 3.7514 -6.1971 -9.5354 36 1 4.3494 -3.7866 -9.4962 37 1 3.8297 -2.4429 -7.4979 38 1 -0.8278 -6.7937 -2.5701 39 1 -0.1654 -7.0734 -4.2684 40 1 2.1025 -7.6525 -3.2894 41 1 1.4413 -7.3730 -1.5906 42 1 2.3117 -5.6020 -0.6012 43 1 2.9146 -4.2424 -1.5797 44 1 1.0379 -4.0672 0.8231 45 1 2.7322 -3.5181 0.7526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000058294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:10 Heat of formation + Delta-G solvation = 52.605303 kcal Electronic energy + Delta-G solvation = -26534.685057 eV Core-core repulsion = 22939.650704 eV Total energy + Delta-G solvation = -3595.034353 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93353 -39.77657 -37.86288 -35.93995 -33.49451 -32.72972 -32.40735 -31.37907 -30.39792 -29.60017 -25.67337 -24.94139 -23.76496 -22.82993 -22.49158 -21.67446 -21.11965 -19.75289 -18.79208 -18.38945 -16.85814 -16.79817 -16.22265 -15.48492 -15.19563 -15.17543 -14.79206 -14.33030 -13.93175 -13.73559 -13.60478 -13.56799 -13.44259 -13.29956 -12.98074 -12.66254 -12.28363 -12.23958 -11.46892 -11.16565 -11.08578 -10.99159 -10.71886 -10.68248 -10.36455 -10.27409 -10.19336 -10.19058 -10.07639 -9.85874 -9.66011 -9.50020 -9.46720 -9.28176 -8.46895 -8.36981 -6.64129 -5.76277 -3.18034 0.40851 0.92800 2.60770 3.03624 3.39291 3.46490 3.47764 3.64855 3.94324 4.16743 4.50014 4.52187 4.53673 4.68885 4.76457 4.88156 5.02539 5.19791 5.24167 5.39339 5.43380 5.46933 5.65940 5.69681 5.74295 5.79232 5.80343 5.93475 6.04106 6.14887 6.20507 6.27744 6.35998 6.49546 6.54799 6.61239 6.64897 6.76411 6.78246 6.86301 7.03979 7.38655 7.40442 7.67205 7.70367 7.82670 8.19476 8.48006 9.24407 9.88115 10.45133 11.32235 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.003870 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.906080 B = 7232.960019 C = 8851.307542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.135 4.135 12 C -0.041 4.041 13 C 0.105 3.895 14 N -0.665 5.665 15 C 0.567 3.433 16 O -0.535 6.535 17 C 0.081 3.919 18 C -0.114 4.114 19 C -0.084 4.084 20 C -0.153 4.153 21 C 0.100 3.900 22 N -0.456 5.456 23 C -0.179 4.179 24 C -0.176 4.176 25 C -0.125 4.125 26 C 0.145 3.855 27 H 0.253 0.747 28 H 0.087 0.913 29 H 0.018 0.982 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.418 0.582 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.164 0.836 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.017 0.983 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.241 -11.572 -15.958 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.174 4.174 12 C -0.061 4.061 13 C 0.018 3.982 14 N -0.315 5.315 15 C 0.352 3.648 16 O -0.413 6.413 17 C -0.057 4.057 18 C -0.135 4.135 19 C -0.110 4.110 20 C -0.173 4.173 21 C -0.059 4.059 22 N -0.168 5.168 23 C -0.217 4.217 24 C -0.214 4.214 25 C -0.164 4.164 26 C 0.019 3.981 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.258 0.742 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.035 0.965 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.712 -11.724 -15.136 19.717 hybrid contribution 0.769 0.851 -0.939 1.482 sum 5.481 -10.873 -16.075 20.166 Atomic orbital electron populations 1.70037 1.05239 1.25408 1.54022 1.25024 0.95247 0.98349 1.01002 0.86297 0.79186 0.83855 0.77585 1.21498 1.21843 1.20430 1.19207 0.92746 0.84954 1.41167 0.91721 1.44060 1.36360 1.01415 1.49655 1.20754 0.88725 0.98156 0.87705 1.22220 1.00027 0.95025 1.00156 1.20780 0.98927 0.93920 0.92430 1.21026 1.00119 0.89378 0.87661 1.45318 1.58191 1.14304 1.13649 1.17909 0.78889 0.85749 0.82280 1.90727 1.53119 1.15766 1.81644 1.21259 0.99088 0.90284 0.95074 1.22125 0.96910 1.01889 0.92587 1.21633 0.95849 0.95331 0.98148 1.22404 1.00025 0.94972 0.99936 1.22879 0.93984 1.00688 0.88368 1.67613 1.09391 1.11442 1.28307 1.23439 0.92904 1.02334 1.02997 1.23353 0.99580 0.97422 1.01094 1.22065 0.96778 0.99132 0.98456 1.20910 0.97566 0.86895 0.92770 0.93698 0.89457 0.96380 0.92754 0.93046 0.90245 0.74224 0.83460 0.84123 0.84201 0.81837 0.88888 0.87751 0.87744 0.88805 0.92928 0.92382 0.96508 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 11.22 55.49 0.62 -25.47 16 2 C 0.00 0.06 4.90 -17.43 -0.09 -0.02 16 3 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.69 2.99 -172.32 -0.52 -15.20 16 10 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16 11 C -0.13 -2.53 4.83 -26.61 -0.13 -2.66 16 12 C -0.04 -0.69 2.28 -90.58 -0.21 -0.90 16 13 C 0.11 1.61 2.48 -131.82 -0.33 1.28 16 14 N -0.66 -10.11 5.38 -48.43 -0.26 -10.37 16 15 C 0.57 8.48 7.52 -12.18 -0.09 8.39 16 16 O -0.53 -8.65 11.80 5.36 0.06 -8.58 16 17 C 0.08 1.06 6.75 -83.01 -0.56 0.50 16 18 C -0.11 -1.19 9.63 -39.05 -0.38 -1.57 16 19 C -0.08 -0.64 10.17 -39.31 -0.40 -1.04 16 20 C -0.15 -1.12 10.11 -39.32 -0.40 -1.52 16 21 C 0.10 0.95 11.18 -17.57 -0.20 0.76 16 22 N -0.46 -5.81 9.54 -9.80 -0.09 -5.91 16 23 C -0.18 -2.60 9.37 -26.69 -0.25 -2.85 16 24 C -0.18 -2.55 8.91 -26.69 -0.24 -2.79 16 25 C -0.13 -2.18 5.22 -26.61 -0.14 -2.31 16 26 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.09 2.31 6.06 -51.93 -0.31 1.99 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 1.03 6.50 -51.93 -0.34 0.70 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.33 7.90 -51.93 -0.41 0.92 16 33 H 0.42 6.50 5.99 -40.82 -0.24 6.25 16 34 H 0.15 1.44 7.64 -52.49 -0.40 1.03 16 35 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 39 H 0.10 1.62 6.37 -51.93 -0.33 1.29 16 40 H 0.10 1.62 6.37 -51.93 -0.33 1.29 16 41 H 0.09 1.25 7.60 -51.93 -0.39 0.85 16 42 H 0.05 0.81 7.24 -51.93 -0.38 0.43 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 LS Contribution 357.19 15.07 5.38 5.38 Total: -1.00 -31.16 357.19 -9.89 -41.05 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.48 Total: 7.21 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -3.58 Total: -4.71 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.25 Total: -56.95 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.06 Total: -8.58 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.16 -9.89 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000058294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.654 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds